CN185249

Overview
NameCN185249
Unique NameCN185249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length333
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2005 contig Csv1_Contig2005:289..621. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185249 vs. ExPASy Swiss-Prot
Match: ATG8_NEUCR (Autophagy-related protein 8 OS=Neurospora crassa GN=atg-8 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.948e-15
Identity = 39/50 (78.00%), Postives = 42/50 (84.00%), Query Frame = -3 
Query:  182 RIKLSAEKAIFIFVDNVLPPTGAIRSAIYEEKKDEDGFLYVTPSGGNPFG 331
            RIKLS EKAIFIFVD VLPPT A+ S+IYEE KDEDGFLY+T SG N FG
Sbjct:   67 RIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116
[Close]
BLAST of CN185249 vs. ExPASy Swiss-Prot
Match: ATG8_NEOFI (Autophagy-related protein 8 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=atg8 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.948e-15
Identity = 39/50 (78.00%), Postives = 42/50 (84.00%), Query Frame = -3 
Query:  182 RIKLSAEKAIFIFVDNVLPPTGAIRSAIYEEKKDEDGFLYVTPSGGNPFG 331
            RIKLS EKAIFIFVD VLPPT A+ S+IYEE KDEDGFLY+T SG N FG
Sbjct:   67 RIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116
[Close]
BLAST of CN185249 vs. ExPASy Swiss-Prot
Match: ATG8_EMENI (Autophagy-related protein 8 OS=Emericella nidulans GN=atg8 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.948e-15
Identity = 39/50 (78.00%), Postives = 42/50 (84.00%), Query Frame = -3 
Query:  182 RIKLSAEKAIFIFVDNVLPPTGAIRSAIYEEKKDEDGFLYVTPSGGNPFG 331
            RIKLS EKAIFIFVD VLPPT A+ S+IYEE KDEDGFLY+T SG N FG
Sbjct:   67 RIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116
[Close]
BLAST of CN185249 vs. ExPASy Swiss-Prot
Match: ATG8_COLLN (Autophagy-related protein 8 OS=Colletotrichum lindemuthianum GN=ATG8 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.948e-15
Identity = 39/50 (78.00%), Postives = 42/50 (84.00%), Query Frame = -3 
Query:  182 RIKLSAEKAIFIFVDNVLPPTGAIRSAIYEEKKDEDGFLYVTPSGGNPFG 331
            RIKLS EKAIFIFVD VLPPT A+ S+IYEE KDEDGFLY+T SG N FG
Sbjct:   67 RIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116
[Close]
BLAST of CN185249 vs. ExPASy Swiss-Prot
Match: ATG8_ASPTN (Autophagy-related protein 8 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=atg8 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.948e-15
Identity = 39/50 (78.00%), Postives = 42/50 (84.00%), Query Frame = -3 
Query:  182 RIKLSAEKAIFIFVDNVLPPTGAIRSAIYEEKKDEDGFLYVTPSGGNPFG 331
            RIKLS EKAIFIFVD VLPPT A+ S+IYEE KDEDGFLY+T SG N FG
Sbjct:   67 RIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116
[Close]
BLAST of CN185249 vs. ExPASy Swiss-Prot
Match: ATG8_ASPOR (Autophagy-related protein 8 OS=Aspergillus oryzae GN=atg8 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.948e-15
Identity = 39/50 (78.00%), Postives = 42/50 (84.00%), Query Frame = -3 
Query:  182 RIKLSAEKAIFIFVDNVLPPTGAIRSAIYEEKKDEDGFLYVTPSGGNPFG 331
            RIKLS EKAIFIFVD VLPPT A+ S+IYEE KDEDGFLY+T SG N FG
Sbjct:   67 RIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116
[Close]
BLAST of CN185249 vs. ExPASy Swiss-Prot
Match: ATG8_ASPNC (Autophagy-related protein 8 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=atg8 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.948e-15
Identity = 39/50 (78.00%), Postives = 42/50 (84.00%), Query Frame = -3 
Query:  182 RIKLSAEKAIFIFVDNVLPPTGAIRSAIYEEKKDEDGFLYVTPSGGNPFG 331
            RIKLS EKAIFIFVD VLPPT A+ S+IYEE KDEDGFLY+T SG N FG
Sbjct:   67 RIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116
[Close]
BLAST of CN185249 vs. ExPASy Swiss-Prot
Match: ATG8_ASPFU (Autophagy-related protein 8 OS=Aspergillus fumigatus GN=atg8 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.948e-15
Identity = 39/50 (78.00%), Postives = 42/50 (84.00%), Query Frame = -3 
Query:  182 RIKLSAEKAIFIFVDNVLPPTGAIRSAIYEEKKDEDGFLYVTPSGGNPFG 331
            RIKLS EKAIFIFVD VLPPT A+ S+IYEE KDEDGFLY+T SG N FG
Sbjct:   67 RIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116
[Close]
BLAST of CN185249 vs. ExPASy Swiss-Prot
Match: ATG8_ASPCL (Autophagy-related protein 8 OS=Aspergillus clavatus GN=atg8 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.948e-15
Identity = 39/50 (78.00%), Postives = 42/50 (84.00%), Query Frame = -3 
Query:  182 RIKLSAEKAIFIFVDNVLPPTGAIRSAIYEEKKDEDGFLYVTPSGGNPFG 331
            RIKLS EKAIFIFVD VLPPT A+ S+IYEE KDEDGFLY+T SG N FG
Sbjct:   67 RIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116
[Close]
BLAST of CN185249 vs. ExPASy Swiss-Prot
Match: ATG8A_ARATH (Autophagy-related protein 8a OS=Arabidopsis thaliana GN=ATG8A PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.948e-15
Identity = 39/51 (76.47%), Postives = 42/51 (82.35%), Query Frame = -3 
Query:  179 RIKLSAEKAIFIFVDNVLPPTGAIRSAIYEEKKDEDGFLYVTPSGGNPFGS 331
            RIKL AEKAIF+FV N LPPT A+ SAIYEE KDEDGFLY+T SG N FGS
Sbjct:   68 RIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFGS 118
The following BLAST results are available for this feature:
BLAST of CN185249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
ATG8_NEUCR2.948e-1578.00Autophagy-related protein 8 OS=Neurospora crassa G... [more]
ATG8_NEOFI2.948e-1578.00Autophagy-related protein 8 OS=Neosartorya fischer... [more]
ATG8_EMENI2.948e-1578.00Autophagy-related protein 8 OS=Emericella nidulans... [more]
ATG8_COLLN2.948e-1578.00Autophagy-related protein 8 OS=Colletotrichum lind... [more]
ATG8_ASPTN2.948e-1578.00Autophagy-related protein 8 OS=Aspergillus terreus... [more]
ATG8_ASPOR2.948e-1578.00Autophagy-related protein 8 OS=Aspergillus oryzae ... [more]
ATG8_ASPNC2.948e-1578.00Autophagy-related protein 8 OS=Aspergillus niger (... [more]
ATG8_ASPFU2.948e-1578.00Autophagy-related protein 8 OS=Aspergillus fumigat... [more]
ATG8_ASPCL2.948e-1578.00Autophagy-related protein 8 OS=Aspergillus clavatu... [more]
ATG8A_ARATH2.948e-1576.47Autophagy-related protein 8a OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A19_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185249 ID=CN185249; Name=CN185249; organism=Citrus sinensis; type=EST; length=333bp
CTTATATCCAATAGGTAACTGTACATATTATCACTGGCAATGTCTTTATA
AAATATAAAATATGCCCGATAAAGGAATATTCAGCGGAAAGCAAGGATGA
CAATTGAGATAAAAATGCCGTCGCCCCAAAAACCACTCAATGAGCGGATA
GATAATCACAAGGCTAAACTGGGATGTGGCTTCCAAATGGGTTCCCCCCA
CTGGGAGTCACATAAAGAAAACCATCTTCATCCTTTTTCTCTTCGTATAT
GGCAGACCTAATTGCACCGGTAGGTGGGAGCACATTATCCACAAAAATAA
ATATCGCCTTTTCAGCACTCAGTTTGATCCTTT
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