CN185246

Overview
NameCN185246
Unique NameCN185246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2470 contig Csv1_Contig2470:1..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH602_THEVL (60 kDa chaperonin 2 OS=Thermosynechococcus vulcanus GN=groL2 PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.934e-59
Identity = 115/194 (59.28%), Postives = 151/194 (77.84%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + F+++  + + L+ G+N LAD V +TLGPKGRNVVLE KYGAP+IVNDGVT+AKE+ELED  EN GA+L+R+ AAKTND+ GDGTTT+ VLAQ LI EG+K VAAG NP+ + RG+EK  K +V  + +++K VE   +A VA VSAGN+ EVG MI+EAM+KVG+ GV+T+EE KS +  + +VEGMQF
Sbjct:    2 AKLVAFHEE--SRRSLERGINALADAVKITLGPKGRNVVLEKKYGAPQIVNDGVTIAKEIELEDAYENTGAQLMREVAAKTNDVVGDGTTTATVLAQALIREGLKNVAAGTNPIALKRGMEKAIKTIVDGIAEVAKPVEGDMIAQVATVSAGNDPEVGAMISEAMAKVGKDGVITIEESKSLQTEMEIVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH602_THEEB (60 kDa chaperonin 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.934e-59
Identity = 115/194 (59.28%), Postives = 151/194 (77.84%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + F+++  + + L+ G+N LAD V +TLGPKGRNVVLE KYGAP+IVNDGVT+AKE+ELED  EN GA+L+R+ AAKTND+ GDGTTT+ VLAQ LI EG+K VAAG NP+ + RG+EK  K +V  + +++K VE   +A VA VSAGN+ EVG MI+EAM+KVG+ GV+T+EE KS +  + +VEGMQF
Sbjct:    2 AKLVAFHEE--SRRSLERGINALADAVKITLGPKGRNVVLEKKYGAPQIVNDGVTIAKEIELEDAYENTGAQLMREVAAKTNDVVGDGTTTATVLAQALIREGLKNVAAGTNPIALKRGMEKAIKTIVDGIAEVAKPVEGDMIAQVATVSAGNDPEVGAMISEAMAKVGKDGVITIEESKSLQTEMEIVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH602_SYNJB (60 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.934e-59
Identity = 116/195 (59.49%), Postives = 154/195 (78.97%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + F ++  A K L+ G+N+LAD + VT+GPKGRNVVLE K+GAP+IVNDGVT+AKE+EL DP+EN GA+L+R+ A+KTND+AGDGTTT+ +LAQ ++ EG+K ++AGANPV + RGIEKT+  LV ++   +K VE  + +A+VA +SAGN+ EVG MIA+AM  VGR GV+T+EE KS E  L VVEGMQF
Sbjct:    2 AKRILFREE--ARKALEQGINQLADAIKVTIGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELADPLENTGAQLMREVASKTNDVAGDGTTTATILAQSMVREGLKNISAGANPVALRRGIEKTTAYLVEQIAAHAKPVEGRKTIAEVATISAGNDSEVGEMIAKAMDAVGRDGVITVEESKSLETELDVVEGMQF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH601_TRIEI (60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 6.711e-59
Identity = 113/185 (61.08%), Postives = 144/185 (77.84%), Query Frame = 3
Query:  294 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQ 848
            D  + + L+ G+N LAD V +T+GPKGRNV+LE KYGAP+IVNDG+TVAK++ELEDP+EN GAKL+++ A+KT D+AGDGTTT+ VLAQ +I EG+K VAAGANPV + RGIEKT   LV E++ ++K VE   +A VA VSAG + EVG MI+EAM KV + GV+T+EE KS    L VVEGMQ
Sbjct:    8 DDKSRRSLERGINTLADAVRITMGPKGRNVLLEKKYGAPQIVNDGITVAKDIELEDPLENTGAKLIQEVASKTKDIAGDGTTTATVLAQSMIKEGLKNVAAGANPVAVRRGIEKTVSLLVKEIQTVAKPVEGEAIAQVATVSAGGDAEVGRMISEAMDKVTKDGVITVEESKSLSTDLEVVEGMQ 192          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH602_ANASP (60 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 7120) GN=groL2 PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.145e-58
Identity = 115/193 (59.59%), Postives = 153/193 (79.27%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQ 848
            AK + F+++  + + L+ GVN LAD V +TLGPKGRNV+LE KYG P+IVNDG+TVAKE+ELEDP+EN GA+L+++ A+KT D+AGDGTTT+ VL Q LI EG+K VAAG NPV + RGI+KT++ALV+E+ +++K VE S +A VA VS+GN+ EVG MIA+A+ KV + GV+T+EE KS    L VVEGMQ
Sbjct:    2 AKIISFDEE--SRRALERGVNALADAVKITLGPKGRNVLLEKKYGTPQIVNDGITVAKEIELEDPLENTGARLIQEVASKTKDVAGDGTTTATVLVQALIREGLKNVAAGTNPVSLKRGIDKTTEALVAEIAKVAKPVEGSAIAQVATVSSGNDEEVGAMIAQAVEKVTKDGVITVEESKSLTTELEVVEGMQ 192          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_METVS (60 kDa chaperonin OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=groL PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.495e-58
Identity = 115/195 (58.97%), Postives = 154/195 (78.97%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + FN++  A KKL+NGV+ L++ V VTLGPKGRNVV+E  YG+P I NDGVT+AKE+ELEDP EN+GA+L+++ A K ND+AGDGTTT+ VLAQ ++ EG+K++ AG+NPV + RGIEK +K  VS L+  SK++  +SE+A VA++SAG+  E+GN+IA+AM KVG  GV+T+EE KS E  L VVEGMQF
Sbjct:    2 AKIIKFNEE--ARKKLENGVDVLSNTVKVTLGPKGRNVVIEKSYGSPLITNDGVTIAKEIELEDPFENMGAQLIKEVATKANDVAGDGTTTATVLAQAMVKEGLKMITAGSNPVFVKRGIEKATKKAVSILETKSKKIAGNSEIAQVASISAGDE-EIGNLIAKAMEKVGENGVITVEEAKSLETTLEVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_CALS8 (60 kDa chaperonin OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=groL PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.952e-58
Identity = 115/196 (58.67%), Postives = 156/196 (79.59%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK + F+++  A + L+ GVNKLAD V VTLGPKGRNVVLE K+G+P+IVNDGVT+AKE+ELEDP EN+GA++VR+ A+KTND+AGDGTTT+ VLAQ +I EG+K +AAGANP+++ RGI+K    +V E+K+MSK+V   E +  VA++SAG+  E+G ++A+AM KV   GV+T+EE K+ E  L +VEGMQF
Sbjct:    2 AAKMILFDEE--ARRALERGVNKLADTVKVTLGPKGRNVVLEKKFGSPQIVNDGVTIAKEIELEDPFENMGAQIVREVASKTNDIAGDGTTTATVLAQAMIREGLKNIAAGANPMILRRGIQKAVDVVVDEIKKMSKKVRGKEDITYVASISAGDE-EIGKLVADAMEKVTNDGVITVEESKTTETTLEIVEGMQF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH602_ANASL (60 kDa chaperonin 2 OS=Anabaena sp. (strain L31) GN=groL2 PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.550e-58
Identity = 115/192 (59.90%), Postives = 151/192 (78.65%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGM 845
            AK + F+++  + + L+ GVN LAD V +TLGPKGRNV+LE KYG P+IVNDG+TVAKE+ELEDP+EN GA+L+++ A+KT D+AGDGTTT+ VL Q LI EG+K VAAG NPV + RGI+KT++ALV E+ +++K VE S +A VA VSAGN+ EVG MIAEA+ +V + GV+T+EE KS    L VVEGM
Sbjct:    2 AKIISFDEE--SRRALERGVNALADAVKITLGPKGRNVLLEKKYGTPQIVNDGITVAKEIELEDPLENTGARLIQEVASKTKDVAGDGTTTATVLVQALIKEGLKNVAAGINPVSLKRGIDKTTEALVEEIAKVAKPVEGSAIAQVATVSAGNDEEVGGMIAEAVERVTKDGVITVEESKSLTTELDVVEGM 191          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_SYNE7 (60 kDa chaperonin OS=Synechococcus elongatus (strain PCC 7942) GN=groL PE=3 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 3.330e-58
Identity = 113/195 (57.95%), Postives = 154/195 (78.97%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + +N++  A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+I+NDGVT+AKE+ELED +EN G  L+RQAA+KTND AGDGTTT+ VLA  ++ EG++ VAAGAN +L+ RGI+K +  LV ++K  ++ VEDS+ +A V A+SAGN++EVG MIA+AM KVG++GV++LEEGKS    L V EGM+F
Sbjct:    2 AKRIIYNEN--ARRALEKGIDILAEAVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAVVKEGLRNVAAGANAILLKRGIDKATNFLVEQIKSHARPVEDSKSIAQVGAISAGNDFEVGQMIADAMDKVGKEGVISLEEGKSMTTELEVTEGMRF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH601_SYNP6 (60 kDa chaperonin 1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=groL1 PE=3 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 3.330e-58
Identity = 113/195 (57.95%), Postives = 154/195 (78.97%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + +N++  A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+I+NDGVT+AKE+ELED +EN G  L+RQAA+KTND AGDGTTT+ VLA  ++ EG++ VAAGAN +L+ RGI+K +  LV ++K  ++ VEDS+ +A V A+SAGN++EVG MIA+AM KVG++GV++LEEGKS    L V EGM+F
Sbjct:    2 AKRIIYNEN--ARRALEKGIDILAEAVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAVVKEGLRNVAAGANAILLKRGIDKATNFLVEQIKSHARPVEDSKSIAQVGAISAGNDFEVGQMIADAMDKVGKEGVISLEEGKSMTTELEVTEGMRF 194          
The following BLAST results are available for this feature:
BLAST of CN185246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_THEVL3.934e-5959.2860 kDa chaperonin 2 OS=Thermosynechococcus vulcanu... [more]
CH602_THEEB3.934e-5959.2860 kDa chaperonin 2 OS=Thermosynechococcus elongat... [more]
CH602_SYNJB3.934e-5959.4960 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 ... [more]
CH601_TRIEI6.711e-5961.0860 kDa chaperonin 1 OS=Trichodesmium erythraeum (s... [more]
CH602_ANASP1.145e-5859.5960 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 71... [more]
CH60_METVS1.495e-5858.9760 kDa chaperonin OS=Methanococcus vannielii (stra... [more]
CH60_CALS81.952e-5858.6760 kDa chaperonin OS=Caldicellulosiruptor saccharo... [more]
CH602_ANASL2.550e-5859.9060 kDa chaperonin 2 OS=Anabaena sp. (strain L31) G... [more]
CH60_SYNE73.330e-5857.9560 kDa chaperonin OS=Synechococcus elongatus (stra... [more]
CH601_SYNP63.330e-5857.9560 kDa chaperonin 1 OS=Synechococcus sp. (strain A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185246 ID=CN185246; Name=CN185246; organism=Citrus sinensis; type=EST; length=851bp
CTCCTCTCTGCCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCG
CACTTTCTGCCGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCAC
TGCCATGTCTTCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTG
ATAAGAAGCTTGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATT
TCTTCAAGTTCATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCG
CACACCTAAGATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGAT
ATGCCATGAAGAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTT
GGAGTTACCCTTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTA
CGGTGCCCCAAAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTG
AGTTAGAGGACCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
GCTGCCAAGACTAATGACTTGGCTGGTGATGGAACAACAACATCTGTTGT
TCTTGCGCAAGGGCTTATAGCTGAAGGTGTTAAGGTCGTGGCAGCTGGTG
CAAATCCTGTTCTTATCACAAGAGGCATTGAGAAGACATCTAAGGCTCTT
GTTTCTGAGCTCAAGCAGATGTCAAAAGAGGTTGAAGATAGTGAACTTGC
CGATGTAGCAGCTGTTAGTGCAGGGAACAACTATGAAGTTGGGAATATGA
TTGCAGAAGCCATGAGTAAAGTGGGACGTAAGGGTGTGGTGACCCTTGAA
GAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAATT
T
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