CN185246

Overview
NameCN185246
Unique NameCN185246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2470 contig Csv1_Contig2470:1..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_DESHY (60 kDa chaperonin OS=Desulfitobacterium hafniense (strain Y51) GN=groL PE=3 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 4.501e-55
Identity = 112/195 (57.44%), Postives = 151/195 (77.44%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + FN++  A + L+ GVN LA+ V VTLGPKGRNVVL+ K+GAP I NDGVT+A+E+ELEDP EN+GA+LV++ A KTND+AGDGTTT+ VLAQ +I EG+K VAAGANP+ I RGIEK  +++V ++K  +K +E  E +A VA++SAG++  +G +I++AM KVG+ GV+T+EE K     L VVEGMQF
Sbjct:    2 AKQIVFNEE--ARRALERGVNALAESVRVTLGPKGRNVVLDKKFGAPLITNDGVTIAREIELEDPFENMGAQLVKEVATKTNDVAGDGTTTATVLAQAIIREGLKNVAAGANPMGIKRGIEKAVESVVDDIKTNAKPIESKESIAQVASISAGDD-NIGVLISDAMEKVGKDGVITVEEAKGMTTELKVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_DESHD (60 kDa chaperonin OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=groL PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.501e-55
Identity = 112/195 (57.44%), Postives = 151/195 (77.44%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + FN++  A + L+ GVN LA+ V VTLGPKGRNVVL+ K+GAP I NDGVT+A+E+ELEDP EN+GA+LV++ A KTND+AGDGTTT+ VLAQ +I EG+K VAAGANP+ I RGIEK  +++V ++K  +K +E  E +A VA++SAG++  +G +I++AM KVG+ GV+T+EE K     L VVEGMQF
Sbjct:    2 AKQIVFNEE--ARRALERGVNALAESVRVTLGPKGRNVVLDKKFGAPLITNDGVTIAREIELEDPFENMGAQLVKEVATKTNDVAGDGTTTATVLAQAIIREGLKNVAAGANPMGIKRGIEKAVESVVEDIKTNAKPIESKESIAQVASISAGDD-NIGVLISDAMEKVGKDGVITVEEAKGMTTELKVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_DESDG (60 kDa chaperonin OS=Desulfovibrio desulfuricans (strain G20) GN=groL PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.501e-55
Identity = 110/196 (56.12%), Postives = 149/196 (76.02%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            A+K++ F  D  A ++L  GV+KLA+ V VTLGPKGRNVV+E  +GAP I  DGV+VAKE+ELED  EN+GA++V++ A+KT+D+AGDGTTT+ +LAQ +  EGVK+VAAG NP+ I RG++K  +ALV EL  ++K   D  E+A V  +SA ++  +GN+IAEAMSKVG++GV+T+EE K  E  L VVEGMQF
Sbjct:    2 ASKEIVF--DTKARERLARGVDKLANAVKVTLGPKGRNVVIEKSFGAPVITKDGVSVAKEIELEDKFENMGAQMVKEVASKTSDIAGDGTTTATILAQAIYKEGVKLVAAGRNPMAIKRGVDKAVEALVKELGNLAKPTRDQKEIAQVGTISANSDTTIGNIIAEAMSKVGKEGVITVEEAKGLETTLEVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_PORYE (60 kDa chaperonin, chloroplastic OS=Porphyra yezoensis GN=groL PE=3 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 5.879e-55
Identity = 104/184 (56.52%), Postives = 146/184 (79.35%), Query Frame = 3
Query:  303 AMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            A K L+ G++ L + V VTLGPKGRNVVLE K+GAP+I+NDGVT+AKE+ LE+ +EN G  L+RQAA+KTND+AGDGTTT+ VLA  ++ +G++ VAAG+NP+ I +GIEK +  +VS++ + +K VED++ +  VA++S+GN+ EVG MIA A+ KVGR+GV++LEEGKS   +L + EGMQF
Sbjct:   11 ARKALEKGMDILTEAVSVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEISLENHIENTGVALIRQAASKTNDVAGDGTTTATVLASAIVKQGMRNVAAGSNPMAIKKGIEKATNFVVSKIAEYAKPVEDTKAIIQVASLSSGNDIEVGKMIANAIEKVGREGVISLEEGKSTNTILEITEGMQF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_GEOBB (60 kDa chaperonin OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=groL PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.879e-55
Identity = 111/196 (56.63%), Postives = 149/196 (76.02%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK + F+++  A   +  GVN LAD V VTLGPKGRNVV+E  YGAP I  DGVTVAKE+ELED  EN+GA+LV++ A+KT+D+AGDGTTT+ VLAQ +  +G K+VAAG NP+ I RG+++  +ALV+ELK +SK ++D  E+A V  +SA N+  +G++IAEAM KVG++GV+T+EE K+ E  L  VEGMQF
Sbjct:    2 AAKIIKFDQE--ARNCILKGVNTLADAVKVTLGPKGRNVVIEKSYGAPLITKDGVTVAKEIELEDKFENMGAQLVKEVASKTSDVAGDGTTTATVLAQAIYRQGAKLVAAGHNPMEIKRGLDQAVEALVAELKNISKPIKDHKEIAQVGTISANNDKTIGDIIAEAMEKVGKEGVITVEEAKAMETTLETVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_ACISJ (60 kDa chaperonin OS=Acidovorax sp. (strain JS42) GN=groL PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.879e-55
Identity = 113/196 (57.65%), Postives = 149/196 (76.02%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F   G A  ++  GVN LA+ V VTLGPKGRNVVLE  +GAP +  DGV+VAKE+EL+D ++N+GA+LV++ A+KTND+AGDGTTT+ VLAQ ++ EG K VAAG NP+ + RGI+K   ALV ELK+ SK    S E+A V ++SA ++  VG +IA+AM KVG++GV+T+E+GKS EN L VVEGMQF
Sbjct:    2 AAKDVVFG--GEARARMVEGVNILANAVKVTLGPKGRNVVLERSFGAPTVTKDGVSVAKEIELKDKLQNMGAQLVKEVASKTNDIAGDGTTTATVLAQAIVREGSKYVAAGLNPMDLKRGIDKAVVALVEELKKASKATTTSKEIAQVGSISANSDESVGKIIADAMDKVGKEGVITVEDGKSLENELEVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH602_VIBPA (60 kDa chaperonin 2 OS=Vibrio parahaemolyticus GN=groL2 PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.879e-55
Identity = 112/196 (57.14%), Postives = 146/196 (74.49%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F  D  A +K+  GVN LAD V VTLGPKGRNVVL+  YGAP I  DGV+VAKE+EL+D  EN+GA++V+Q A+K ND AGDGTTT+ VLAQ  I EG+K VA+G NP+ + RGI+K ++A V +L++MSK   D E +  V ++SA ++  +G +IAEAM KVGR GV+T+EEG+  +N L VVEGMQF
Sbjct:    2 AAKDVLFAND--ARQKMLKGVNLLADAVKVTLGPKGRNVVLDKSYGAPTITKDGVSVAKEIELKDKFENMGAQMVKQVASKANDEAGDGTTTATVLAQSFINEGLKAVASGMNPMDLKRGIDKATEAAVEKLREMSKPCSDKESITQVGSISANSDRAIGEIIAEAMEKVGRNGVITVEEGQGLDNELSVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_PSEE4 (60 kDa chaperonin OS=Pseudomonas entomophila (strain L48) GN=groL PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 7.678e-55
Identity = 112/196 (57.14%), Postives = 145/196 (73.98%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F     A KK+  GVN LAD V  TLGPKGRNVVL   +GAP I  DGV+VAKE+EL+D  EN+GA+LV++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K + A+V+ELK +SK   DS+ +A V  +SA ++  +G +IAEAM KVG++GV+T+EEG   EN L VVEGMQF
Sbjct:    2 AAKDVKFGDS--ARKKMLVGVNVLADAVKATLGPKGRNVVLAKSFGAPTITKDGVSVAKEIELKDAFENMGAQLVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKATAAIVAELKNLSKPCADSKAIAQVGTISANSDNSIGEIIAEAMEKVGKEGVITVEEGSGLENELSVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_OCEIH (60 kDa chaperonin OS=Oceanobacillus iheyensis GN=groL PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 7.678e-55
Identity = 115/195 (58.97%), Postives = 147/195 (75.38%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AKDL F++D  A + +  GV+ LAD V VTLGPKGRNVVL+ K+G+P I NDGVT+AKE+ELED  EN+GA+LV + A+KTND+AGDGTTT+ VLAQ +I EG+K V +GANPV I RGIEK  +  V ELK +S+ +E  E ++ +AAVS+G+  EVG +IAEAM +VG  GV+T+EE K     L VVEGMQF
Sbjct:    2 AKDLKFSED--ARRAMLRGVDTLADAVKVTLGPKGRNVVLDKKFGSPLITNDGVTIAKEIELEDAFENMGAQLVSEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTSGANPVGIRRGIEKAVELAVQELKGISQPIESKEAISQIAAVSSGDE-EVGQLIAEAMERVGNDGVITIEESKGFNTELEVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_GEOSM (60 kDa chaperonin OS=Geobacter sp. (strain M21) GN=groL PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 7.678e-55
Identity = 111/196 (56.63%), Postives = 149/196 (76.02%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK + F+++  A   +  GVN LAD V VTLGPKGRNVV+E  YGAP I  DGVTVAKE+ELED  EN+GA+LV++ A+KT+D+AGDGTTT+ VLAQ +  +G K+VAAG NP+ I RG+++  +ALV+ELK +SK ++D  E+A V  +SA N+  +G++IAEAM KVG++GV+T+EE K+ E  L  VEGMQF
Sbjct:    2 AAKLIKFDQE--ARNCILKGVNTLADAVKVTLGPKGRNVVIEKSYGAPLITKDGVTVAKEIELEDKFENMGAQLVKEVASKTSDVAGDGTTTATVLAQAIYRQGAKLVAAGHNPMEIKRGLDQAVEALVAELKNISKPIKDHKEIAQVGTISANNDKTIGDIIAEAMEKVGKEGVITVEEAKAMETTLETVEGMQF 195          
The following BLAST results are available for this feature:
BLAST of CN185246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_DESHY4.501e-5557.4460 kDa chaperonin OS=Desulfitobacterium hafniense ... [more]
CH60_DESHD4.501e-5557.4460 kDa chaperonin OS=Desulfitobacterium hafniense ... [more]
CH60_DESDG4.501e-5556.1260 kDa chaperonin OS=Desulfovibrio desulfuricans (... [more]
CH60_PORYE5.879e-5556.5260 kDa chaperonin, chloroplastic OS=Porphyra yezoe... [more]
CH60_GEOBB5.879e-5556.6360 kDa chaperonin OS=Geobacter bemidjiensis (strai... [more]
CH60_ACISJ5.879e-5557.6560 kDa chaperonin OS=Acidovorax sp. (strain JS42) ... [more]
CH602_VIBPA5.879e-5557.1460 kDa chaperonin 2 OS=Vibrio parahaemolyticus GN=... [more]
CH60_PSEE47.678e-5557.1460 kDa chaperonin OS=Pseudomonas entomophila (stra... [more]
CH60_OCEIH7.678e-5558.9760 kDa chaperonin OS=Oceanobacillus iheyensis GN=g... [more]
CH60_GEOSM7.678e-5556.6360 kDa chaperonin OS=Geobacter sp. (strain M21) GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185246 ID=CN185246; Name=CN185246; organism=Citrus sinensis; type=EST; length=851bp
CTCCTCTCTGCCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCG
CACTTTCTGCCGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCAC
TGCCATGTCTTCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTG
ATAAGAAGCTTGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATT
TCTTCAAGTTCATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCG
CACACCTAAGATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGAT
ATGCCATGAAGAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTT
GGAGTTACCCTTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTA
CGGTGCCCCAAAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTG
AGTTAGAGGACCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
GCTGCCAAGACTAATGACTTGGCTGGTGATGGAACAACAACATCTGTTGT
TCTTGCGCAAGGGCTTATAGCTGAAGGTGTTAAGGTCGTGGCAGCTGGTG
CAAATCCTGTTCTTATCACAAGAGGCATTGAGAAGACATCTAAGGCTCTT
GTTTCTGAGCTCAAGCAGATGTCAAAAGAGGTTGAAGATAGTGAACTTGC
CGATGTAGCAGCTGTTAGTGCAGGGAACAACTATGAAGTTGGGAATATGA
TTGCAGAAGCCATGAGTAAAGTGGGACGTAAGGGTGTGGTGACCCTTGAA
GAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAATT
T
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