CN185246

Overview
NameCN185246
Unique NameCN185246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2470 contig Csv1_Contig2470:1..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_DIAST (60 kDa chaperonin OS=Diaphorobacter sp. (strain TPSY) GN=groL PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 7.678e-55
Identity = 113/196 (57.65%), Postives = 149/196 (76.02%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F   G A  ++  GVN LA+ V VTLGPKGRNVVLE  +GAP +  DGV+VAKE+EL+D ++N+GA+LV++ A+KTND+AGDGTTT+ VLAQ ++ EG K VAAG NP+ + RGI+K   ALV ELK+ SK    S E+A V ++SA ++  VG +IA+AM KVG++GV+T+E+GKS EN L VVEGMQF
Sbjct:    2 AAKDVVFG--GEARARMVEGVNILANAVKVTLGPKGRNVVLERSFGAPTVTKDGVSVAKEIELKDKLQNMGAQLVKEVASKTNDIAGDGTTTATVLAQAIVREGSKYVAAGLNPMDLKRGIDKAVVALVEELKKASKATTTSKEIAQVGSISANSDESVGKIIADAMDKVGKEGVITVEDGKSLENELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH601_SYNFM (60 kDa chaperonin 1 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=groL1 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 7.678e-55
Identity = 108/187 (57.75%), Postives = 144/187 (77.01%), Query Frame = 3
Query:  294 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            D  A + L +GVN LAD V VTLGPKGRNVV+E  +G P +  DGVTVAKE+ELED  EN+GA++V++ A+KT+D+AGDGTTT+ +LAQ +  EG K+VAAGANP+ + RGIEK  + +V ELK++SK  +D  E+A V  +SA N+  +GN+IAEAM+KVG++GV+T+EE K+ E  L VVEGMQF
Sbjct:    8 DVKAREALLSGVNILADAVKVTLGPKGRNVVIEKAFGGPTVTKDGVTVAKEIELEDKFENMGAQMVKEVASKTSDVAGDGTTTATILAQSIYYEGSKLVAAGANPMALKRGIEKAVQVVVDELKKISKPTKDQKEIAQVGTISANNDPTIGNIIAEAMNKVGKEGVITVEEAKAMETTLEVVEGMQF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_XANCB (60 kDa chaperonin OS=Xanthomonas campestris pv. campestris (strain B100) GN=groL PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.003e-54
Identity = 112/196 (57.14%), Postives = 144/196 (73.47%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSK-EVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F +D  A  ++  GVN LA+ V  TLGPKGRNVVLE  +GAP I  DGV+VAKE+EL D  EN+GA++V++ A++TND AGDGTTT+ VLAQ LI EG K VAAG NP+ + RGI++  KA V ELK +SK   +D  +A V  +SA ++  +GN+IAEAM KVG++GV+T+EEG   EN L VVEGMQF
Sbjct:    2 AAKDIRFGED--ARTRMVRGVNVLANAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASRTNDNAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDQAVKAAVIELKNISKPTTDDKAIAQVGTISANSDESIGNIIAEAMQKVGKEGVITVEEGSGLENELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_SYMTH (60 kDa chaperonin OS=Symbiobacterium thermophilum GN=groL PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.003e-54
Identity = 108/195 (55.38%), Postives = 148/195 (75.90%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + F  D  A +KLQ GV+ LA+ V VTLGP+GRNVVL+ K+GAP + NDGVT+A+E+ELEDP EN+GA+LV++ A KTND+AGDGTTTS VLAQ ++ EG+K V  GANP+++ RGIEK  +  V EL++ +  VE ++ +A+VAA+SA N+ E+G ++A+AM  VG+ GV+T+EE K+    L  VEGMQF
Sbjct:    3 AKQIIF--DEAARRKLQAGVDALANTVKVTLGPRGRNVVLDKKFGAPAVANDGVTIAREIELEDPFENMGAQLVKEVATKTNDVAGDGTTTSTVLAQAIVKEGLKNVTGGANPMILKRGIEKAVQVAVEELRKQAIPVETNKAIAEVAAISANNDREIGELVAKAMDTVGKDGVITVEESKTLHTELETVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_PSEPW (60 kDa chaperonin OS=Pseudomonas putida (strain W619) GN=groL PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.003e-54
Identity = 112/196 (57.14%), Postives = 145/196 (73.98%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F     A KK+  GVN LAD V  TLGPKGRNVVL   +GAP I  DGV+VAKE+EL+D  EN+GA+LV++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K + A+V+ELK +SK   DS+ +A V  +SA ++  +G +IAEAM KVG++GV+T+EEG   EN L VVEGMQF
Sbjct:    2 AAKDVKFGDS--ARKKMLVGVNVLADAVKATLGPKGRNVVLAKSFGAPTITKDGVSVAKEIELKDAFENMGAQLVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKATAAVVAELKNLSKPCADSKAIAQVGTISANSDNSIGEIIAEAMEKVGKEGVITVEEGSGLENELSVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_PSEPU (60 kDa chaperonin OS=Pseudomonas putida GN=groL PE=1 SV=3)

HSP 1 Score: 213.772 bits (543), Expect = 1.003e-54
Identity = 112/196 (57.14%), Postives = 145/196 (73.98%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F     A KK+  GVN LAD V  TLGPKGRNVVL   +GAP I  DGV+VAKE+EL+D  EN+GA+LV++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K + A+V+ELK +SK   DS+ +A V  +SA ++  +G +IAEAM KVG++GV+T+EEG   EN L VVEGMQF
Sbjct:    2 AAKDVKFGDS--ARKKMLVGVNVLADAVKATLGPKGRNVVLAKSFGAPTITKDGVSVAKEIELKDAFENMGAQLVKEVASKANDAAGDGTTTATVLAQSIVNEGLKAVAAGMNPMDLKRGIDKATAAVVAELKNLSKPCADSKAIAQVGTISANSDSSIGEIIAEAMEKVGKEGVITVEEGSGLENELSVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_PSEPK (60 kDa chaperonin OS=Pseudomonas putida (strain KT2440) GN=groL PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.003e-54
Identity = 112/196 (57.14%), Postives = 145/196 (73.98%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F     A KK+  GVN LAD V  TLGPKGRNVVL   +GAP I  DGV+VAKE+EL+D  EN+GA+LV++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K + A+V+ELK +SK   DS+ +A V  +SA ++  +G +IAEAM KVG++GV+T+EEG   EN L VVEGMQF
Sbjct:    2 AAKDVKFGDS--ARKKMLVGVNVLADAVKATLGPKGRNVVLAKSFGAPTITKDGVSVAKEIELKDAFENMGAQLVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKATAAVVAELKNLSKPCADSKAIAQVGTISANSDNSIGEIIAEAMEKVGKEGVITVEEGSGLENELSVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_PSEP1 (60 kDa chaperonin OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=groL PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.003e-54
Identity = 112/196 (57.14%), Postives = 145/196 (73.98%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F     A KK+  GVN LAD V  TLGPKGRNVVL   +GAP I  DGV+VAKE+EL+D  EN+GA+LV++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K + A+V+ELK +SK   DS+ +A V  +SA ++  +G +IAEAM KVG++GV+T+EEG   EN L VVEGMQF
Sbjct:    2 AAKDVKFGDS--ARKKMLVGVNVLADAVKATLGPKGRNVVLAKSFGAPTITKDGVSVAKEIELKDAFENMGAQLVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKATAAVVAELKNLSKPCADSKAIAQVGTISANSDNSIGEIIAEAMEKVGKEGVITVEEGSGLENELSVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_PELTS (60 kDa chaperonin OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=groL PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.003e-54
Identity = 110/196 (56.12%), Postives = 146/196 (74.49%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            A K++ F +D  A + L+ GVN LA+ V +TLGPKGRNVVLE K+G+P IVNDGVT+A+E+EL DP EN+GA+LV++ A KTND+AGDGTTT+ VLAQ ++ EG+K VAAGANP++I RGIEK     V  +K  +K +E  S +A VA +SA N+  +GN+IA+AM KVG+ GV+T+EE K     L +VEGM F
Sbjct:    2 AGKEIIFRED--ARRSLEKGVNALAEAVKITLGPKGRNVVLEKKFGSPMIVNDGVTIAREIELSDPFENMGAQLVKEVATKTNDVAGDGTTTACVLAQAIVREGLKNVAAGANPMIIKRGIEKAVDKAVEAIKNSAKTIESKSAIAQVATISA-NDEMIGNLIADAMEKVGKDGVITVEESKGTTTNLEIVEGMNF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_DESVV (60 kDa chaperonin OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=groL PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.003e-54
Identity = 109/196 (55.61%), Postives = 149/196 (76.02%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            A+K++ F  D  A +KL  GV+KLA+ V VTLGPKGRNVV+E  +G+P I  DGV+VAKE+ELED  EN+GA++V++ A+KT+D+AGDGTTT+ +LAQ +  EGVK+VAAG NP+ I RG++K  ++LV EL  ++K   D  E+A V  +SA ++  +GN+IAEAMSKVG++GV+T+EE K  E  L VVEGMQF
Sbjct:    2 ASKEILF--DTKAREKLSRGVDKLANAVKVTLGPKGRNVVIEKSFGSPVITKDGVSVAKEIELEDKFENMGAQMVKEVASKTSDIAGDGTTTATILAQAIYREGVKLVAAGRNPMAIKRGVDKAVESLVRELGNLAKPTRDQKEIAQVGTISANSDSTIGNIIAEAMSKVGKEGVITVEEAKGLETTLEVVEGMQF 195          
The following BLAST results are available for this feature:
BLAST of CN185246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_DIAST7.678e-5557.6560 kDa chaperonin OS=Diaphorobacter sp. (strain TP... [more]
CH601_SYNFM7.678e-5557.7560 kDa chaperonin 1 OS=Syntrophobacter fumaroxidan... [more]
CH60_XANCB1.003e-5457.1460 kDa chaperonin OS=Xanthomonas campestris pv. ca... [more]
CH60_SYMTH1.003e-5455.3860 kDa chaperonin OS=Symbiobacterium thermophilum ... [more]
CH60_PSEPW1.003e-5457.1460 kDa chaperonin OS=Pseudomonas putida (strain W6... [more]
CH60_PSEPU1.003e-5457.1460 kDa chaperonin OS=Pseudomonas putida GN=groL PE... [more]
CH60_PSEPK1.003e-5457.1460 kDa chaperonin OS=Pseudomonas putida (strain KT... [more]
CH60_PSEP11.003e-5457.1460 kDa chaperonin OS=Pseudomonas putida (strain F1... [more]
CH60_PELTS1.003e-5456.1260 kDa chaperonin OS=Pelotomaculum thermopropionic... [more]
CH60_DESVV1.003e-5455.6160 kDa chaperonin OS=Desulfovibrio vulgaris subsp.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185246 ID=CN185246; Name=CN185246; organism=Citrus sinensis; type=EST; length=851bp
CTCCTCTCTGCCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCG
CACTTTCTGCCGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCAC
TGCCATGTCTTCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTG
ATAAGAAGCTTGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATT
TCTTCAAGTTCATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCG
CACACCTAAGATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGAT
ATGCCATGAAGAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTT
GGAGTTACCCTTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTA
CGGTGCCCCAAAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTG
AGTTAGAGGACCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
GCTGCCAAGACTAATGACTTGGCTGGTGATGGAACAACAACATCTGTTGT
TCTTGCGCAAGGGCTTATAGCTGAAGGTGTTAAGGTCGTGGCAGCTGGTG
CAAATCCTGTTCTTATCACAAGAGGCATTGAGAAGACATCTAAGGCTCTT
GTTTCTGAGCTCAAGCAGATGTCAAAAGAGGTTGAAGATAGTGAACTTGC
CGATGTAGCAGCTGTTAGTGCAGGGAACAACTATGAAGTTGGGAATATGA
TTGCAGAAGCCATGAGTAAAGTGGGACGTAAGGGTGTGGTGACCCTTGAA
GAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAATT
T
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