CN185246

Overview
NameCN185246
Unique NameCN185246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2470 contig Csv1_Contig2470:1..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_DESVH (60 kDa chaperonin OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=groL PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.003e-54
Identity = 109/196 (55.61%), Postives = 149/196 (76.02%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            A+K++ F  D  A +KL  GV+KLA+ V VTLGPKGRNVV+E  +G+P I  DGV+VAKE+ELED  EN+GA++V++ A+KT+D+AGDGTTT+ +LAQ +  EGVK+VAAG NP+ I RG++K  ++LV EL  ++K   D  E+A V  +SA ++  +GN+IAEAMSKVG++GV+T+EE K  E  L VVEGMQF
Sbjct:    2 ASKEILF--DTKAREKLSRGVDKLANAVKVTLGPKGRNVVIEKSFGSPVITKDGVSVAKEIELEDKFENMGAQMVKEVASKTSDIAGDGTTTATILAQAIYREGVKLVAAGRNPMAIKRGVDKAVESLVRELGNLAKPTRDQKEIAQVGTISANSDSTIGNIIAEAMSKVGKEGVITVEEAKGLETTLEVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_DESAP (60 kDa chaperonin OS=Desulforudis audaxviator (strain MP104C) GN=groL PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.003e-54
Identity = 110/196 (56.12%), Postives = 147/196 (75.00%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ + +D  A   ++ GVN LAD V VTLGPKGRNVVLE K+G+P IVNDGVT+A+E+ELE+P EN+GA+LV++ A KTND+AGDGTTT+ VLAQ ++  G+K V AGANP+++ RGIEK  +  V E+K  +K VE  E +  VA++SA N+  +GN+IA+AM KVG+ GV+T+EE K     L VV+GM F
Sbjct:    2 AAKDIVYRED--ARTAMERGVNALADAVRVTLGPKGRNVVLEKKFGSPMIVNDGVTIAREIELENPFENMGAQLVKEVATKTNDIAGDGTTTAAVLAQAIVRAGLKNVTAGANPMILKRGIEKAVERTVEEIKSRAKPVESKEAITQVASISA-NDTTIGNLIADAMEKVGKDGVITVEESKGMGTSLEVVDGMNF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_CLOB8 (60 kDa chaperonin OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=groL PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.003e-54
Identity = 114/195 (58.46%), Postives = 149/195 (76.41%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK L F +D  A + +Q GV+KLAD V VTLGPKGRNVVL+ K+GAP I NDGV++A+E+ELEDP EN+GA+LV++ A KTND+AGDGTTT+ +LAQ +I EG+K V AGANP+LI  GI+      V E++++SK+V+  E +A VAA+SA +  EVG +IA+AM KVG +GV+T+EE KS    L VVEGMQF
Sbjct:    2 AKMLKFGED--ARRSMQIGVDKLADTVKVTLGPKGRNVVLDKKFGAPLITNDGVSIAREIELEDPYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPILIRTGIKMAVDKAVEEIQKISKQVDGKEDIARVAAISAADE-EVGKLIADAMEKVGNEGVITIEESKSMGTELDVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_ACICJ (60 kDa chaperonin OS=Acidiphilium cryptum (strain JF-5) GN=groL PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.003e-54
Identity = 111/196 (56.63%), Postives = 145/196 (73.98%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEV-EDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F+ D  A ++L  GV+ LA+ V VTLGPKGRNVV+E  +G+P+I  DGVTVAKE+EL D  EN+GA++VR+ A+KTNDLAGDGTTT+ VLAQ ++ EG K VAAG NP+ + RGI+K   A+V ELK+ +K++   SE A V  +SA    E+G MI+EAM KVG +GV+T+EE K  +  L VVEGMQF
Sbjct:    2 AAKDVRFSAD--ARERLIRGVDLLANAVKVTLGPKGRNVVIEKSFGSPRITKDGVTVAKEIELADKFENMGAQMVREVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDKAVNAIVDELKKRTKKITTPSETAQVGTISANGEAEIGKMISEAMQKVGNEGVITVEEAKGIQTELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH604_RHILO (60 kDa chaperonin 4 OS=Rhizobium loti GN=groL4 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.003e-54
Identity = 111/196 (56.63%), Postives = 148/196 (75.51%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F++D  A +++  GVN LAD V VTLGPKGRNVV++  +GAP+I  DGVTVAKE+ELED  EN+GA++VR+ A+KTND+AGDGTTT+ VLAQ ++ EG K VAAG NP+ + RGI+     +V+ L + +K+++ S E+A V  +SA  +  VG MIAEAM KVG +GV+T+EE K+AE  L VVEGMQF
Sbjct:    2 AAKDVKFSRD--ARERMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDIAGDGTTTATVLAQSIVQEGHKAVAAGMNPMDLKRGIDLAVSEVVAALGKAAKKIKTSEEVAQVGTISANGDESVGKMIAEAMQKVGNEGVITVEEAKTAETELEVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH602_PROMM (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9313) GN=groL2 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.003e-54
Identity = 107/195 (54.87%), Postives = 149/195 (76.41%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + +N+   A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+I+NDGVT+AKE+ELED +EN G  L+RQAA+KTND AGDGTTT+ VLA  ++  G++ VAAGAN + + +GI+K S  LVS++++++K + DS  +A    ++AGN+ EVG MIA+AM KVG++GV++LEEGKS    L V EGM+F
Sbjct:    2 AKRIIYNEQ--ARRALERGIDILAESVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLRNVAAGANAISLKKGIDKASDFLVSKIEELAKPISDSNAIAQCGTIAAGNDEEVGQMIADAMDKVGKEGVISLEEGKSMTTELEVTEGMRF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH602_MOOTA (60 kDa chaperonin 2 OS=Moorella thermoacetica (strain ATCC 39073) GN=groL2 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.003e-54
Identity = 110/195 (56.41%), Postives = 150/195 (76.92%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + F+++  A + L+ G+ KL + V VTLGP+GRNVVLE K+GAP I NDGVT+AKEVELEDP+EN+GA LVR+ A+KTND+AGDGTTT+ VLAQ ++ EG+K VAAGANP+ + RGIEK   A+V  LK  ++ VE  + ++ VA++SA N+ ++G ++A+AM KVG+ GV+T+EE K  E  + VVEGMQF
Sbjct:    2 AKQVVFDRE--AREALEKGITKLTEAVRVTLGPRGRNVVLEKKFGAPTITNDGVTIAKEVELEDPLENVGALLVREVASKTNDVAGDGTTTACVLAQAIVREGMKNVAAGANPMFMKRGIEKAVAAVVENLKAQARPVETKDSISQVASISA-NDPQIGALVADAMEKVGKDGVITVEESKGMETAVDVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH601_PROMT (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain NATL2A) GN=groL1 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.003e-54
Identity = 108/195 (55.38%), Postives = 147/195 (75.38%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + +N+   A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+I+NDGVT+AKE+ELED +EN G  L+RQAA+KTND AGDGTTT+ VLA  ++  G+K VAAGAN + + +GI+K ++ LV ++K  SK + DS  +A    ++AGN+ EVG MIA+AM KVG++GV++LEEGKS    L V EGM+F
Sbjct:    2 AKRIIYNEQ--ARRALERGIDILAESVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLKNVAAGANAITLKKGIDKATEFLVEKIKDHSKPISDSNAIAQCGTIAAGNDEEVGKMIADAMDKVGKEGVISLEEGKSMTTELEVTEGMRF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH601_PROM3 (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain MIT 9303) GN=groL1 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.003e-54
Identity = 107/195 (54.87%), Postives = 149/195 (76.41%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + +N+   A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+I+NDGVT+AKE+ELED +EN G  L+RQAA+KTND AGDGTTT+ VLA  ++  G++ VAAGAN + + +GI+K S  LVS++++++K + DS  +A    ++AGN+ EVG MIA+AM KVG++GV++LEEGKS    L V EGM+F
Sbjct:    2 AKRIIYNEQ--ARRALERGIDILAESVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLRNVAAGANAISLKKGIDKASDFLVSKIEELAKPISDSNAIAQCGTIAAGNDEEVGQMIADAMDKVGKEGVISLEEGKSMTTELEVTEGMRF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_LACGA (60 kDa chaperonin OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=groL PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.310e-54
Identity = 115/195 (58.97%), Postives = 145/195 (74.36%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AKD+ F+++  A + L  GV+KLAD V  TLGPKGRNVVLE  YGAP I NDGVT+AK ++L+D  EN+GAKLV +AA KTND+AGDGTTT+ VL Q ++ EG+K V AGANPV I RGIE  +KA V EL ++S +V    E+A VA+VS+ +  EVGN+IA+AM KVG  GV+T+EE K  +  L VVEGMQF
Sbjct:    2 AKDIKFSEN--ARRSLLKGVDKLADTVKTTLGPKGRNVVLEKSYGAPDITNDGVTIAKSIDLKDHFENMGAKLVSEAAQKTNDIAGDGTTTATVLTQAIVREGMKNVTAGANPVGIRRGIETATKAAVDELHKISHKVSTKDEIAQVASVSSAST-EVGNLIADAMEKVGHDGVITIEESKGIDTELSVVEGMQF 193          
The following BLAST results are available for this feature:
BLAST of CN185246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_DESVH1.003e-5455.6160 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]
CH60_DESAP1.003e-5456.1260 kDa chaperonin OS=Desulforudis audaxviator (str... [more]
CH60_CLOB81.003e-5458.4660 kDa chaperonin OS=Clostridium beijerinckii (str... [more]
CH60_ACICJ1.003e-5456.6360 kDa chaperonin OS=Acidiphilium cryptum (strain ... [more]
CH604_RHILO1.003e-5456.6360 kDa chaperonin 4 OS=Rhizobium loti GN=groL4 PE=... [more]
CH602_PROMM1.003e-5454.8760 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH602_MOOTA1.003e-5456.4160 kDa chaperonin 2 OS=Moorella thermoacetica (str... [more]
CH601_PROMT1.003e-5455.3860 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH601_PROM31.003e-5454.8760 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH60_LACGA1.310e-5458.9760 kDa chaperonin OS=Lactobacillus gasseri (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185246 ID=CN185246; Name=CN185246; organism=Citrus sinensis; type=EST; length=851bp
CTCCTCTCTGCCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCG
CACTTTCTGCCGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCAC
TGCCATGTCTTCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTG
ATAAGAAGCTTGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATT
TCTTCAAGTTCATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCG
CACACCTAAGATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGAT
ATGCCATGAAGAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTT
GGAGTTACCCTTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTA
CGGTGCCCCAAAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTG
AGTTAGAGGACCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
GCTGCCAAGACTAATGACTTGGCTGGTGATGGAACAACAACATCTGTTGT
TCTTGCGCAAGGGCTTATAGCTGAAGGTGTTAAGGTCGTGGCAGCTGGTG
CAAATCCTGTTCTTATCACAAGAGGCATTGAGAAGACATCTAAGGCTCTT
GTTTCTGAGCTCAAGCAGATGTCAAAAGAGGTTGAAGATAGTGAACTTGC
CGATGTAGCAGCTGTTAGTGCAGGGAACAACTATGAAGTTGGGAATATGA
TTGCAGAAGCCATGAGTAAAGTGGGACGTAAGGGTGTGGTGACCCTTGAA
GAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAATT
T
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