CN185246

Overview
NameCN185246
Unique NameCN185246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_BACSK (60 kDa chaperonin OS=Bacillus clausii (strain KSM-K16) GN=groL PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.310e-54
Identity = 114/195 (58.46%), Postives = 147/195 (75.38%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AKD+ F+++  A + +  GV+ LA+ V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELED  EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V +GANP+ I +GIEK + A V ELK +SK +E  E +A VAA+S+ +  EVG +IAEAM +VG  GV+T+EE K     L VVEGMQF
Sbjct:    2 AKDIQFSEE--ARRSMLKGVDTLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDIAGDGTTTATVLAQAMIREGLKNVTSGANPMGIRKGIEKATAAAVKELKAISKPIEGRESIAQVAAISSADE-EVGQIIAEAMERVGNDGVITIEESKGFSTELEVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_AZOVI (60 kDa chaperonin OS=Azotobacter vinelandii GN=groL PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.310e-54
Identity = 111/196 (56.63%), Postives = 147/196 (75.00%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK++ F     A KK+  GVN LAD V  TLGPKGRNVVL+  +GAP I  DGV+VAKE+EL+D  EN+GA+LV+  A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K + A+V+ELK ++K   DS+ +A V  +SA ++  +GN+IAEAM+KVG++GV+T+EEG   EN L VVEGMQF
Sbjct:    2 AAKEVKFGDS--ARKKMLVGVNVLADAVKATLGPKGRNVVLDKSFGAPTITKDGVSVAKEIELKDKFENMGAQLVKDVASKANDEAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKATIAIVAELKSLAKPCSDSKAIAQVGTISANSDESIGNIIAEAMNKVGKEGVITVEEGSGLENELSVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH602_PARUW (60 kDa chaperonin 2 OS=Protochlamydia amoebophila (strain UWE25) GN=groL2 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.310e-54
Identity = 111/196 (56.63%), Postives = 147/196 (75.00%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK + F +D  A +K+  GV  LAD V VTLGPKGRNVV++  YG P I  DGVTVAKE+ELED  EN+GA++V++ A+KT D AGDGTTT+ VLA+ + +EG++ VAAGANP+ + RG+EK  K +V ELK+ SK V+D +E+A VA +SA N+ E+G MIA+A+ KVGR G +T+EEGK  E  L VV+GM+F
Sbjct:    2 AAKIIKFKED--ARQKILKGVRTLADAVKVTLGPKGRNVVIDKSYGTPHITKDGVTVAKEIELEDKFENMGAQMVKEVASKTADKAGDGTTTATVLAEAIYSEGLRNVAAGANPLDLKRGMEKAVKVIVQELKKRSKTVDDRNEIAQVATISANNDAEIGEMIAQAIEKVGRDGTITVEEGKGFETELDVVKGMKF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH602_MESSB (60 kDa chaperonin 2 OS=Mesorhizobium sp. (strain BNC1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.310e-54
Identity = 107/196 (54.59%), Postives = 149/196 (76.02%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEV-EDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F+ D  A +++  GV+ LA+ V VTLGPKGRNVV++  +GAP+I  DGVTVAKE+ELED  EN+GA++VR+ A+KTND AGDGTTT+ VL Q ++ EG K VA+G NP+ + RGI+K  +A+V ELK+ +++V ++ E+A V  +SA  + E+G  +A+AM KVG +GV+T+EE K+AE  L VVEGMQF
Sbjct:    2 AAKDVKFHSD--ARERMLRGVDVLANAVKVTLGPKGRNVVIDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDAAGDGTTTATVLTQAIVKEGAKAVASGMNPMDLKRGIDKAVEAIVEELKKNARKVTKNDEIAQVGTISANGDQEIGRFLAQAMEKVGNEGVITVEEAKTAETELEVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH601_CHRVO (60 kDa chaperonin 1 OS=Chromobacterium violaceum GN=groL1 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.310e-54
Identity = 109/196 (55.61%), Postives = 153/196 (78.06%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK++ F+ +  A +++ NGVN LAD V VTLGPKGRNV+L   +GAP I  DGV+VAKE+EL+DP EN+GA++V++ A+KT D+AGDGTTT+ VLAQ ++ EG+K VA+G NP+ + RGI+K   A++ EL+ +SK V +S E A VAA+SA ++  +G +IA+AM KVG++GV+T+E+GKS +N L VVEGMQF
Sbjct:    2 AAKEVRFHDN--ARERIVNGVNVLADAVKVTLGPKGRNVLLARSFGAPHITKDGVSVAKEIELKDPFENMGAQMVKEVASKTADVAGDGTTTATVLAQAIVQEGMKYVASGMNPMDLKRGIDKAVHAVIKELQTLSKPVTNSKETAQVAALSANSDEAIGKIIADAMDKVGKEGVITVEDGKSLDNELAVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_THEPX (60 kDa chaperonin OS=Thermoanaerobacter sp. (strain X514) GN=groL PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.710e-54
Identity = 108/195 (55.38%), Postives = 150/195 (76.92%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + + ++  A + L+ GVN +AD V VTLGP+GRNVVL+ KYG+P + NDGVT+A+E+ELEDP EN GA+L+++ A KTND+AGDGTTT+ +LAQ ++ EG+K +AAGANP+L+ RGI K   A V  LK++SK +++ E +A VA++SA +  E+GN+IAEAM KVG+ GV+T+EE K+    L VVEGMQF
Sbjct:    2 AKQIKYGEE--ARRALERGVNAVADTVKVTLGPRGRNVVLDKKYGSPTVTNDGVTIAREIELEDPFENQGAQLLKEVATKTNDVAGDGTTTATLLAQAMVREGLKNLAAGANPMLLRRGIAKAVDAAVEGLKRISKPIDNKESIAHVASISAADE-EIGNLIAEAMDKVGKDGVITVEESKTLGTTLEVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_THEP3 (60 kDa chaperonin OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=groL PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.710e-54
Identity = 108/195 (55.38%), Postives = 150/195 (76.92%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + + ++  A + L+ GVN +AD V VTLGP+GRNVVL+ KYG+P + NDGVT+A+E+ELEDP EN GA+L+++ A KTND+AGDGTTT+ +LAQ ++ EG+K +AAGANP+L+ RGI K   A V  LK++SK +++ E +A VA++SA +  E+GN+IAEAM KVG+ GV+T+EE K+    L VVEGMQF
Sbjct:    2 AKQIKYGEE--ARRALERGVNAVADTVKVTLGPRGRNVVLDKKYGSPTVTNDGVTIAREIELEDPFENQGAQLLKEVATKTNDVAGDGTTTATLLAQAMVREGLKNLAAGANPMLLRRGIAKAVDAAVEGLKRISKPIDNKESIAHVASISAADE-EIGNLIAEAMDKVGKDGVITVEESKTLGTTLEVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_NITOC (60 kDa chaperonin OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=groL PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.710e-54
Identity = 109/196 (55.61%), Postives = 148/196 (75.51%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F++D  A  ++ +GVN LAD V VTLGP+GRNVVLE  +GAP I  DGV+VAKE+EL+D  EN+GA++V++ A++T+D+AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RG++K   A V ELK++SK  EDS+ +  V  +SA     VG +IAEAM KVG++GV+T+EEG   +N L VVEGMQF
Sbjct:    2 AAKDVRFSED--ARHRMMHGVNVLADAVRVTLGPRGRNVVLEKSFGAPTITKDGVSVAKEIELKDRFENMGAQMVKEVASQTSDVAGDGTTTATVLAQSILREGMKAVAAGMNPMDLKRGVDKAVVAAVEELKKLSKPCEDSKAIGQVGTISANAEESVGKIIAEAMDKVGKEGVITVEEGSGLDNELEVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_GEOSF (60 kDa chaperonin OS=Geobacter sp. (strain FRC-32) GN=groL PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.710e-54
Identity = 110/195 (56.41%), Postives = 146/195 (74.87%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + F+++G        GVN LAD V VTLGPKGRNVV+E  +GAP I  DGVTVAKE+ELED  EN+GA+LV++ A+KT+D+AGDGTTT+ VLAQ +  +G K+VAAG NP+ I RGI+K  + LV+ELK +SK ++D  E+A V  +SA N+  +G++IAEAM KVG++GV+T+EE K+ E  L  VEGMQF
Sbjct:    2 AKVIKFDQEG--RNAFLKGVNTLADAVKVTLGPKGRNVVIEKSFGAPLITKDGVTVAKEIELEDKFENMGAQLVKEVASKTSDVAGDGTTTATVLAQAIYRQGAKLVAAGHNPMEIKRGIDKAVETLVAELKSISKPIKDHKEIAQVGTISANNDKTIGDIIAEAMEKVGKEGVITVEEAKAMETSLETVEGMQF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_CLOBB (60 kDa chaperonin OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=groL PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.710e-54
Identity = 114/195 (58.46%), Postives = 147/195 (75.38%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK L F +D  A + +Q GV+KLAD V VTLGPKGRNVVL+ K+G+P I NDGV++A+E+ELEDP EN+GA+LV++ A KTND+AGDGTTT+ +LAQ +I EG+K V AGANP+LI  GI       V E+K++SK VE  E +A VAA+SA +  E+G +IA+AM KVG +GV+T+EE KS    L VVEGMQF
Sbjct:    2 AKMLKFGED--ARRSMQVGVDKLADTVKVTLGPKGRNVVLDKKFGSPLITNDGVSIAREIELEDPYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPMLIRNGIRMAVDKAVEEIKKISKPVEGKEDIARVAAISAADE-EIGKLIADAMEKVGNEGVITIEESKSMGTELDVVEGMQF 193          
The following BLAST results are available for this feature:
BLAST of CN185246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_BACSK1.310e-5458.4660 kDa chaperonin OS=Bacillus clausii (strain KSM-... [more]
CH60_AZOVI1.310e-5456.6360 kDa chaperonin OS=Azotobacter vinelandii GN=gro... [more]
CH602_PARUW1.310e-5456.6360 kDa chaperonin 2 OS=Protochlamydia amoebophila ... [more]
CH602_MESSB1.310e-5454.5960 kDa chaperonin 2 OS=Mesorhizobium sp. (strain B... [more]
CH601_CHRVO1.310e-5455.6160 kDa chaperonin 1 OS=Chromobacterium violaceum G... [more]
CH60_THEPX1.710e-5455.3860 kDa chaperonin OS=Thermoanaerobacter sp. (strai... [more]
CH60_THEP31.710e-5455.3860 kDa chaperonin OS=Thermoanaerobacter pseudethan... [more]
CH60_NITOC1.710e-5455.6160 kDa chaperonin OS=Nitrosococcus oceani (strain ... [more]
CH60_GEOSF1.710e-5456.4160 kDa chaperonin OS=Geobacter sp. (strain FRC-32)... [more]
CH60_CLOBB1.710e-5458.4660 kDa chaperonin OS=Clostridium botulinum (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185246 ID=CN185246; Name=CN185246; organism=Citrus sinensis; type=EST; length=851bp
CTCCTCTCTGCCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCG
CACTTTCTGCCGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCAC
TGCCATGTCTTCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTG
ATAAGAAGCTTGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATT
TCTTCAAGTTCATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCG
CACACCTAAGATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGAT
ATGCCATGAAGAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTT
GGAGTTACCCTTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTA
CGGTGCCCCAAAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTG
AGTTAGAGGACCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
GCTGCCAAGACTAATGACTTGGCTGGTGATGGAACAACAACATCTGTTGT
TCTTGCGCAAGGGCTTATAGCTGAAGGTGTTAAGGTCGTGGCAGCTGGTG
CAAATCCTGTTCTTATCACAAGAGGCATTGAGAAGACATCTAAGGCTCTT
GTTTCTGAGCTCAAGCAGATGTCAAAAGAGGTTGAAGATAGTGAACTTGC
CGATGTAGCAGCTGTTAGTGCAGGGAACAACTATGAAGTTGGGAATATGA
TTGCAGAAGCCATGAGTAAAGTGGGACGTAAGGGTGTGGTGACCCTTGAA
GAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAATT
T
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