CN185246

Overview
NameCN185246
Unique NameCN185246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_THEBR (60 kDa chaperonin OS=Thermoanaerobacter brockii GN=groL PE=1 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 2.234e-54
Identity = 108/195 (55.38%), Postives = 150/195 (76.92%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + + ++  A + L+ GVN +AD V VTLGP+GRNVVL+ KYG+P + NDGVT+A+E+ELEDP EN GA+L+++AA KTND+AGDGTTT+ +LAQ ++ EG+K +AAGANP+L+ RGI K   A V  LK++SK +++ E +A VA++SA +  E+G +IAEAM KVG+ GV+T+EE K+    L VVEGMQF
Sbjct:    2 AKQIKYGEE--ARRALERGVNAVADTVKVTLGPRGRNVVLDKKYGSPTVTNDGVTIAREIELEDPFENQGAQLLKEAATKTNDIAGDGTTTATLLAQAMVREGLKNLAAGANPMLLRRGIAKAVDAAVEGLKRISKPIDNKESIAHVASISAADE-EIGKLIAEAMDKVGKDGVITVEESKTLGTTLEVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_NITSB (60 kDa chaperonin OS=Nitratiruptor sp. (strain SB155-2) GN=groL PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.234e-54
Identity = 106/196 (54.08%), Postives = 153/196 (78.06%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK++HF+    A  +L  GV KLAD V VT+GP+GRNV+++  +G+P I  DGV+VAKE+EL + VEN+GA+LV++ A+KT D AGDGTTT+ VLA  +  EG++ + AGANP+ + RG++K ++A+V+ELK+++KEV+D  E+A VA +SA N+ ++G +IAEAM KVG+ GV+T+EEGKS ++ L VVEGMQF
Sbjct:    2 AAKEIHFSD--IARGELFEGVKKLADAVKVTMGPRGRNVLIQKSFGSPSITKDGVSVAKEIELPNTVENMGAQLVKEVASKTADEAGDGTTTATVLAYNIFKEGLRNITAGANPIEVKRGMDKAAEAIVAELKKIAKEVKDKKEIAQVATISANNDPKIGELIAEAMEKVGKDGVITVEEGKSLQDELEVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_METPB (60 kDa chaperonin OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=groL PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.234e-54
Identity = 111/196 (56.63%), Postives = 145/196 (73.98%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F+ D  A  K+  GV+ LAD V VTLGPKGRNVV+E  +GAP+I  DGVTVAKE+EL D  EN+GA++VR+ A+KTND+AGDGTTT+ VLAQ ++ EG K VAAG NP+ + RGI+  ++A V ++   +K+V  S E+A V  +SA  + E+G MIA AM KVG +GV+T+EE K+AE  L VVEGMQF
Sbjct:    2 AAKDVRFSAD--ARDKMLRGVDILADAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELADKFENMGAQMVREVASKTNDIAGDGTTTATVLAQAIVREGAKFVAAGINPMDLKRGIDLATQAAVKDITARAKKVASSEEVAQVGTISANGDKEIGEMIAHAMQKVGNEGVITVEEAKTAETELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_GEOLS (60 kDa chaperonin OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=groL PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.234e-54
Identity = 107/196 (54.59%), Postives = 151/196 (77.04%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            +AK++ FN++G     +  GVN LAD V VTLGPKGRNV++E  +G+P I  DGV+VAKEVELE+  EN+GA+LV++ A+KT+D+AGDGTTT+ VLAQ +  +G K+VAAG NP+ I RGI+K  +A+V+EL+++SK ++D  E+A V  +SA N+  +G++IAEAM KVG++GV+T+EE K+ E  L  VEGMQF
Sbjct:    2 SAKEIRFNEEG--RNAILRGVNALADAVKVTLGPKGRNVIIEKSFGSPLITKDGVSVAKEVELENKFENMGAQLVKEVASKTSDVAGDGTTTATVLAQAIYKQGSKLVAAGHNPMEIKRGIDKAVEAIVAELQKISKPIKDHKEIAQVGTISANNDKTIGDIIAEAMEKVGKEGVITVEEAKAMETSLETVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_ALKOO (60 kDa chaperonin OS=Alkaliphilus oremlandii (strain OhILAs) GN=groL PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.234e-54
Identity = 110/195 (56.41%), Postives = 148/195 (75.90%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK++ F ++  A + L+ GVNKLAD V VTLGPKGRNV+++ K+G+P I NDGVT+A+E+ELED  EN+GA+LV++ A KTND+AGDGTTT+ +LAQ +I EG+K VAAGANP+++ +GI+K     V ELK  S++VE  E +A + AVSA +  E+G +IA+AM KVG  GV+T+EE KS    L VVEGMQF
Sbjct:    2 AKEIKFAEE--ARRSLEAGVNKLADTVKVTLGPKGRNVIIDKKFGSPLITNDGVTIAREIELEDAYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVAAGANPMILKKGIQKAVDVAVEELKNTSQKVEGKEAIAQIGAVSAADE-EIGQLIADAMEKVGNDGVITVEESKSMGTTLDVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH602_PROM3 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9303) GN=groL2 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.234e-54
Identity = 110/194 (56.70%), Postives = 142/194 (73.20%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK L F+ D  +   L+ GVN LAD V VT+GP+GRNVVLE K+GAP IVNDGVT+AKE+EL+DP EN+GAKL++Q A+KT D AGDGTTT+ VLAQ ++ EG++ VAAGA+P+ + RG+EK    LV EL Q+S+ V  + +  VA VS+G + EVG M++EAM KV   GV+T+EE KS    L V EGM F
Sbjct:    2 AKLLSFSDD--SRSALERGVNSLADAVRVTIGPRGRNVVLEKKFGAPDIVNDGVTIAKEIELDDPFENLGAKLIQQVASKTKDKAGDGTTTATVLAQAMVHEGLRNVAAGASPIELRRGMEKAVAQLVEELAQLSQAVGGNAIHQVATVSSGGDQEVGRMVSEAMDKVSADGVITVEESKSLATELEVTEGMAF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_OENOB (60 kDa chaperonin OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=groL PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.918e-54
Identity = 113/195 (57.95%), Postives = 144/195 (73.85%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK++ F++D  A  ++Q G++KLAD V  T+GPKGRNVVLE  YG P I NDGVT+AK VEL+D  EN+GAKLV +AA+KTND+AGDGTTT+ VL Q ++ EG+K V AGANPV I  GIEK + A V+ L + S EVED S +  +A++SA N  E+G +IA+AM KVG  GV+T+EE K  E  L VVEGMQF
Sbjct:    2 AKEVRFSED--ARTRMQAGIDKLADAVKTTIGPKGRNVVLEQSYGTPTITNDGVTIAKAVELDDHYENMGAKLVTEAASKTNDVAGDGTTTATVLTQAIVNEGLKNVTAGANPVGIRSGIEKATAAAVAGLNKNSHEVEDSSSIQQIASISAANE-EIGKLIADAMEKVGHDGVITIEESKGIETELDVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_BACLD (60 kDa chaperonin OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=groL PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.918e-54
Identity = 113/195 (57.95%), Postives = 146/195 (74.87%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AKD+ F+++  A + +  GV+ LAD V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELED  EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANPV + +GIE+     V  LK++SK +E  E +A VA++SA +  EVG++IAEAM +VG  GV+T+EE K     L VVEGMQF
Sbjct:    2 AKDIKFSEE--ARRSMLRGVDALADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPVGVRKGIEQAVAVAVESLKEISKPIEGKESIAQVASISAADE-EVGSLIAEAMERVGNDGVITIEESKGFTTELEVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_VIBHB (60 kDa chaperonin OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=groL PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.811e-54
Identity = 110/196 (56.12%), Postives = 147/196 (75.00%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  +N+GA++V++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A V +LK++S E  D++ +A V  +SA ++  VGN+IAEAM KVGR GV+T+EEG++ ++ L VVEGMQF
Sbjct:    2 AAKDVKFGND--ARVKMLEGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFQNMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVIAAVEQLKELSVECNDTKAIAQVGTISANSDSSVGNIIAEAMEKVGRDGVITVEEGQALQDELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_SYNR3 (60 kDa chaperonin OS=Synechococcus sp. (strain RCC307) GN=groL PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.811e-54
Identity = 107/195 (54.87%), Postives = 149/195 (76.41%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + +N+   A + L+ G++ L + V VTLGPKGRNVVLE K+GAP+I+NDGVT+AKE+ELED +EN G  L+RQAA+KTND AGDGTTT+ VLA  ++  G++ VAAGAN + + RGI++ +  LVS++++ +K + D + +A V A+SAGN+ EVG MIA+AM KVG++GV++LEEGKS    L V EGM+F
Sbjct:    2 AKRIIYNEQ--ARRALEKGIDILTESVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVSLIRQAASKTNDAAGDGTTTATVLAHAMVKAGLRNVAAGANAISLKRGIDQAAVFLVSKIEENAKPITDNNSIAQVGAISAGNDDEVGKMIADAMEKVGKEGVISLEEGKSMTTELEVTEGMRF 194          
The following BLAST results are available for this feature:
BLAST of CN185246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_THEBR2.234e-5455.3860 kDa chaperonin OS=Thermoanaerobacter brockii GN... [more]
CH60_NITSB2.234e-5454.0860 kDa chaperonin OS=Nitratiruptor sp. (strain SB1... [more]
CH60_METPB2.234e-5456.6360 kDa chaperonin OS=Methylobacterium populi (stra... [more]
CH60_GEOLS2.234e-5454.5960 kDa chaperonin OS=Geobacter lovleyi (strain ATC... [more]
CH60_ALKOO2.234e-5456.4160 kDa chaperonin OS=Alkaliphilus oremlandii (stra... [more]
CH602_PROM32.234e-5456.7060 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH60_OENOB2.918e-5457.9560 kDa chaperonin OS=Oenococcus oeni (strain BAA-3... [more]
CH60_BACLD2.918e-5457.9560 kDa chaperonin OS=Bacillus licheniformis (strai... [more]
CH60_VIBHB3.811e-5456.1260 kDa chaperonin OS=Vibrio harveyi (strain ATCC B... [more]
CH60_SYNR33.811e-5454.8760 kDa chaperonin OS=Synechococcus sp. (strain RCC... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185246 ID=CN185246; Name=CN185246; organism=Citrus sinensis; type=EST; length=851bp
CTCCTCTCTGCCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCG
CACTTTCTGCCGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCAC
TGCCATGTCTTCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTG
ATAAGAAGCTTGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATT
TCTTCAAGTTCATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCG
CACACCTAAGATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGAT
ATGCCATGAAGAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTT
GGAGTTACCCTTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTA
CGGTGCCCCAAAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTG
AGTTAGAGGACCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
GCTGCCAAGACTAATGACTTGGCTGGTGATGGAACAACAACATCTGTTGT
TCTTGCGCAAGGGCTTATAGCTGAAGGTGTTAAGGTCGTGGCAGCTGGTG
CAAATCCTGTTCTTATCACAAGAGGCATTGAGAAGACATCTAAGGCTCTT
GTTTCTGAGCTCAAGCAGATGTCAAAAGAGGTTGAAGATAGTGAACTTGC
CGATGTAGCAGCTGTTAGTGCAGGGAACAACTATGAAGTTGGGAATATGA
TTGCAGAAGCCATGAGTAAAGTGGGACGTAAGGGTGTGGTGACCCTTGAA
GAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAATT
T
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