CN185246

Overview
NameCN185246
Unique NameCN185246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_PSYWF (60 kDa chaperonin OS=Psychrobacter sp. (strain PRwf-1) GN=groL PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.811e-54
Identity = 109/195 (55.90%), Postives = 148/195 (75.90%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AKD+ F  D  A K++ +GVN LA+ V VTLGPKGRNVV++  +GAP I  DGV+VAKE+ELE+  EN+GA+LVR+ A+KTND+AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A V E+  +S   +DS+ +A V ++SA ++ ++G +IAEAM KVG+KGV+T+EEG   E+ L VVEGMQF
Sbjct:    2 AKDVKFGID--ARKQMMDGVNVLANAVKVTLGPKGRNVVIDKSFGAPAITKDGVSVAKEIELENKFENMGAQLVREVASKTNDVAGDGTTTATVLAQAILVEGMKSVAAGMNPMDLKRGIDKAVAAAVEEIHNISTPADDSKAIAQVGSISANSDTKIGELIAEAMDKVGKKGVITVEEGSGFEDSLEVVEGMQF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_METRJ (60 kDa chaperonin OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=groL PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.811e-54
Identity = 111/196 (56.63%), Postives = 145/196 (73.98%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F+ D  A  K+  GV+ LAD V VTLGPKGRNVV+E  +GAP+I  DGVTVAKE+EL D  EN+GA++VR+ A+KTND+AGDGTTT+ VLAQ ++ EG K VAAG NP+ + RGI+  ++A V ++   +K+V  S E+A V  +SA  + E+G MIA AM KVG +GV+T+EE K+AE  L VVEGMQF
Sbjct:    2 AAKDVRFSAD--ARDKMLRGVDILADAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELADKFENMGAQMVREVASKTNDIAGDGTTTATVLAQAIVREGAKYVAAGINPMDLKRGIDLATQAAVKDIIARAKKVSTSDEVAQVGTISANGDKEIGEMIAHAMQKVGNEGVITVEEAKTAETELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_HAHCH (60 kDa chaperonin OS=Hahella chejuensis (strain KCTC 2396) GN=groL PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.811e-54
Identity = 110/196 (56.12%), Postives = 147/196 (75.00%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F     A K++  GVN LAD V VTLGPKGRNVVL+  +GAP +  DGV+VAKE+EL+D  EN+GA++V++ A+KTND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A V E+K +S+  EDS+ +A V  +SA ++  +GN+IAEAM KVG++GV+T+EEG   E+ L VVEGMQF
Sbjct:    2 AAKDVKFGDS--ARKRMVAGVNTLADAVKVTLGPKGRNVVLDKSFGAPTVTKDGVSVAKEIELKDKFENMGAQMVKEVASKTNDEAGDGTTTATVLAQAILNEGLKSVAAGMNPMDLKRGIDKAVIAAVKEIKNISRPCEDSKSIAQVGTISANSDERIGNIIAEAMEKVGKEGVITVEEGSGLEDELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_GEOUR (60 kDa chaperonin OS=Geobacter uraniireducens (strain Rf4) GN=groL PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.811e-54
Identity = 109/195 (55.90%), Postives = 146/195 (74.87%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + F+++G        GVN LAD V VTLGPKGRNVV+E  +GAP I  DGVTVAKE+EL+D  EN+GA+LV++ A+KT+D+AGDGTTT+ VLAQ +  +G K+VAAG NP+ I RGI+K  + LV+ELK +SK ++D  E+A V  +SA N+  +G++IAEAM KVG++GV+T+EE K+ E  L  VEGMQF
Sbjct:    2 AKIIKFDQEG--RNAFLKGVNTLADAVKVTLGPKGRNVVIEKSFGAPLITKDGVTVAKEIELDDKFENMGAQLVKEVASKTSDVAGDGTTTATVLAQAIYRQGAKLVAAGHNPMEIKRGIDKAVETLVAELKNISKPIKDHKEIAQVGTISANNDKTIGDIIAEAMEKVGKEGVITVEEAKAMETTLETVEGMQF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_BACWK (60 kDa chaperonin OS=Bacillus weihenstephanensis (strain KBAB4) GN=groL PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.811e-54
Identity = 114/195 (58.46%), Postives = 146/195 (74.87%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AKD+ F+++  A + +  GV+ LA+ V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELED  EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANP+ + +GIEK   A + ELK +SK +E  S +A VAA+S+ +  EVG +IAEAM +VG  GV+TLEE K     L VVEGMQF
Sbjct:    2 AKDIKFSEE--ARRSMLRGVDTLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGLRKGIEKAVTAAIEELKAISKPIEGKSSIAQVAAISSADE-EVGQLIAEAMERVGNDGVITLEESKGFTTELDVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_BACCN (60 kDa chaperonin OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=groL PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.811e-54
Identity = 115/195 (58.97%), Postives = 145/195 (74.36%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AKD+ F+++  A + +  GV+ LA+ V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELED  EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANP+ + +GIEK     V ELK +SK +E  S +A VAA+SA +  EVG +IAEAM +VG  GV+TLEE K     L VVEGMQF
Sbjct:    2 AKDIKFSEE--ARRSMLRGVDTLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGLRKGIEKAVATAVEELKTISKPIEGKSSIAQVAAISAADE-EVGQLIAEAMERVGNDGVITLEESKGFTTELDVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_SPHWW (60 kDa chaperonin OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=groL PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.977e-54
Identity = 114/196 (58.16%), Postives = 145/196 (73.98%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F++D  A +++  GV+ LAD V VTLGPKGRNVV++  +GAP+I  DGVTVAKE+EL+D  ENIGA+LVR+ A+KTNDLAGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+     +V  LK  SK V  S E+A V  +SA  + EVG  IAEAM KVG++GV+T+EE K  E  L VVEGMQF
Sbjct:    2 AAKDVKFSRD--ARERILRGVDILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVTVAKEIELKDKFENIGAQLVREVASKTNDLAGDGTTTATVLAQAIVREGLKSVAAGMNPMDLKRGIDLAVTKVVENLKARSKPVAGSNEVAQVGIISANGDKEVGEKIAEAMDKVGKEGVITVEEAKGLEFELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_PSEU5 (60 kDa chaperonin OS=Pseudomonas stutzeri (strain A1501) GN=groL PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.977e-54
Identity = 111/196 (56.63%), Postives = 146/196 (74.49%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK++ F     A KK+  GVN LAD V  TLGPKGRNVVLE  +GAP I  DGV+VAKE+EL+D  EN+GA+LV+  A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K + A+V+ELKQ++K   DS+ +A V  +SA ++  +G +IAEAM +VG++GV+T+EEG   EN L VVEGMQF
Sbjct:    2 AAKEVKFGDS--ARKKMLVGVNVLADAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELKDRFENMGAQLVKDVASKANDEAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKATIAIVAELKQLAKPCTDSKAIAQVGTISANSDESIGQIIAEAMERVGKEGVITVEEGSGFENELSVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_LEPBP (60 kDa chaperonin OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=groL PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.977e-54
Identity = 106/195 (54.36%), Postives = 148/195 (75.90%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + F  D  A +KL +GVNKLA+ V VTLGPKGRNVV++ K+G+P I  DGVTVAKE+ELED +EN+GA++V++ + KTND+AGDGTTT+ +LAQ +I EG+K V AGANP+ +  GI+K     V E+K+ + ++   +E A+VA +SA N+ E+GN+IA+A  KVG++GV+T++E KS E  L +VEGMQF
Sbjct:    2 AKTIEF--DETARRKLLSGVNKLANAVKVTLGPKGRNVVIDKKFGSPTITKDGVTVAKEIELEDAIENMGAQMVKEVSTKTNDIAGDGTTTATILAQAIINEGLKNVTAGANPMALKHGIDKAVVVAVEEIKKHAIKINSKAEYANVATISANNDPEIGNLIAQAFDKVGKEGVITVDEAKSIETTLDIVEGMQF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_LEPBA (60 kDa chaperonin OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=groL PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.977e-54
Identity = 106/195 (54.36%), Postives = 148/195 (75.90%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + F  D  A +KL +GVNKLA+ V VTLGPKGRNVV++ K+G+P I  DGVTVAKE+ELED +EN+GA++V++ + KTND+AGDGTTT+ +LAQ +I EG+K V AGANP+ +  GI+K     V E+K+ + ++   +E A+VA +SA N+ E+GN+IA+A  KVG++GV+T++E KS E  L +VEGMQF
Sbjct:    2 AKTIEF--DETARRKLLSGVNKLANAVKVTLGPKGRNVVIDKKFGSPTITKDGVTVAKEIELEDAIENMGAQMVKEVSTKTNDIAGDGTTTATILAQAIINEGLKNVTAGANPMALKHGIDKAVVVAVEEIKKHAIKINSKAEYANVATISANNDPEIGNLIAQAFDKVGKEGVITVDEAKSIETTLDIVEGMQF 194          
The following BLAST results are available for this feature:
BLAST of CN185246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_PSYWF3.811e-5455.9060 kDa chaperonin OS=Psychrobacter sp. (strain PRw... [more]
CH60_METRJ3.811e-5456.6360 kDa chaperonin OS=Methylobacterium radiotoleran... [more]
CH60_HAHCH3.811e-5456.1260 kDa chaperonin OS=Hahella chejuensis (strain KC... [more]
CH60_GEOUR3.811e-5455.9060 kDa chaperonin OS=Geobacter uraniireducens (str... [more]
CH60_BACWK3.811e-5458.4660 kDa chaperonin OS=Bacillus weihenstephanensis (... [more]
CH60_BACCN3.811e-5458.9760 kDa chaperonin OS=Bacillus cereus subsp. cytoto... [more]
CH60_SPHWW4.977e-5458.1660 kDa chaperonin OS=Sphingomonas wittichii (strai... [more]
CH60_PSEU54.977e-5456.6360 kDa chaperonin OS=Pseudomonas stutzeri (strain ... [more]
CH60_LEPBP4.977e-5454.3660 kDa chaperonin OS=Leptospira biflexa serovar Pa... [more]
CH60_LEPBA4.977e-5454.3660 kDa chaperonin OS=Leptospira biflexa serovar Pa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185246 ID=CN185246; Name=CN185246; organism=Citrus sinensis; type=EST; length=851bp
CTCCTCTCTGCCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCG
CACTTTCTGCCGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCAC
TGCCATGTCTTCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTG
ATAAGAAGCTTGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATT
TCTTCAAGTTCATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCG
CACACCTAAGATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGAT
ATGCCATGAAGAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTT
GGAGTTACCCTTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTA
CGGTGCCCCAAAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTG
AGTTAGAGGACCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
GCTGCCAAGACTAATGACTTGGCTGGTGATGGAACAACAACATCTGTTGT
TCTTGCGCAAGGGCTTATAGCTGAAGGTGTTAAGGTCGTGGCAGCTGGTG
CAAATCCTGTTCTTATCACAAGAGGCATTGAGAAGACATCTAAGGCTCTT
GTTTCTGAGCTCAAGCAGATGTCAAAAGAGGTTGAAGATAGTGAACTTGC
CGATGTAGCAGCTGTTAGTGCAGGGAACAACTATGAAGTTGGGAATATGA
TTGCAGAAGCCATGAGTAAAGTGGGACGTAAGGGTGTGGTGACCCTTGAA
GAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAATT
T
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