CN185246

Overview
NameCN185246
Unique NameCN185246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2470 contig Csv1_Contig2470:1..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_LEPIN (60 kDa chaperonin OS=Leptospira interrogans GN=groL PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 6.281e-57
Identity = 110/195 (56.41%), Postives = 153/195 (78.46%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AKD+ +N+   A +KL  GVNKLA+ V VTLGPKGRNVV++ K+GAP I  DGVTVAKE+ELEDP+EN+GA++V++ + KTND+AGDGTTT+ +LAQ +I EG+K V AGANP+ + RGI+K   A V  +++ + ++E+  ++A+VA++SA N+  +GN+IA+AM KVG+ GV+T+EE KS E  L VVEGMQF
Sbjct:    2 AKDIEYNET--ARRKLLEGVNKLANAVKVTLGPKGRNVVIDKKFGAPTITKDGVTVAKEIELEDPLENMGAQMVKEVSTKTNDVAGDGTTTATILAQSIINEGLKNVTAGANPMSLKRGIDKAVTAAVESIQKRAVKIENKKDIANVASISANNDNTIGNLIADAMDKVGKDGVITVEEAKSIETTLDVVEGMQF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH602_SYNSC (60 kDa chaperonin 2 OS=Synechococcus sp. (strain CC9605) GN=groL2 PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 6.281e-57
Identity = 111/195 (56.92%), Postives = 151/195 (77.44%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + +N++  A + L+ G++ L + V VTLGPKGRNVVLE K+GAP+I+NDGVT+AKE+ELED +EN G  L+RQAA+KTND AGDGTTT+ VLA  ++  G++ VAAGAN + + +GI+K S  LVS++K+M+K + DS  +A V  +SAGN+ EVG MIA+AM KVG++GV++LEEGKS E  L V EGM+F
Sbjct:    2 AKRIIYNEN--ARRALEKGIDILCEAVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLRNVAAGANAITLKKGIDKASDFLVSKIKEMAKPIADSNAIAQVGTISAGNDEEVGKMIADAMDKVGKEGVISLEEGKSMETELEVTEGMRF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_LISW6 (60 kDa chaperonin OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=groL PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.071e-56
Identity = 117/195 (60.00%), Postives = 148/195 (75.90%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AKD+ F++D  A + +  GV++LA+ V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELEDP EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANPV + RGIEK     + ELK +SK +E  E +A VAA+S+G+  EVG +IAEAM +VG  GV+T+EE K     L VVEGMQF
Sbjct:    2 AKDIKFSED--ARRAMLRGVDQLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEGLKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIESKESIAQVAAISSGDE-EVGKLIAEAMERVGNDGVITIEESKGFATELDVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_LISMO (60 kDa chaperonin OS=Listeria monocytogenes GN=groL PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.071e-56
Identity = 117/195 (60.00%), Postives = 148/195 (75.90%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AKD+ F++D  A + +  GV++LA+ V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELEDP EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANPV + RGIEK     + ELK +SK +E  E +A VAA+S+G+  EVG +IAEAM +VG  GV+T+EE K     L VVEGMQF
Sbjct:    2 AKDIKFSED--ARRAMLRGVDQLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEGLKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIESKESIAQVAAISSGDE-EVGKLIAEAMERVGNDGVITIEESKGFATELDVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_LISMH (60 kDa chaperonin OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=groL PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.071e-56
Identity = 117/195 (60.00%), Postives = 148/195 (75.90%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AKD+ F++D  A + +  GV++LA+ V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELEDP EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANPV + RGIEK     + ELK +SK +E  E +A VAA+S+G+  EVG +IAEAM +VG  GV+T+EE K     L VVEGMQF
Sbjct:    2 AKDIKFSED--ARRAMLRGVDQLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEGLKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIESKESIAQVAAISSGDE-EVGKLIAEAMERVGNDGVITIEESKGFATELDVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_LISMF (60 kDa chaperonin OS=Listeria monocytogenes serotype 4b (strain F2365) GN=groL PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.071e-56
Identity = 117/195 (60.00%), Postives = 148/195 (75.90%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AKD+ F++D  A + +  GV++LA+ V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELEDP EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANPV + RGIEK     + ELK +SK +E  E +A VAA+S+G+  EVG +IAEAM +VG  GV+T+EE K     L VVEGMQF
Sbjct:    2 AKDIKFSED--ARRAMLRGVDQLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEGLKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIESKESIAQVAAISSGDE-EVGKLIAEAMERVGNDGVITIEESKGFATELDVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_LISMC (60 kDa chaperonin OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=groL PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.071e-56
Identity = 117/195 (60.00%), Postives = 148/195 (75.90%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AKD+ F++D  A + +  GV++LA+ V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELEDP EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANPV + RGIEK     + ELK +SK +E  E +A VAA+S+G+  EVG +IAEAM +VG  GV+T+EE K     L VVEGMQF
Sbjct:    2 AKDIKFSED--ARRAMLRGVDQLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEGLKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIESKESIAQVAAISSGDE-EVGKLIAEAMERVGNDGVITIEESKGFATELDVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_LISIN (60 kDa chaperonin OS=Listeria innocua GN=groL PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.071e-56
Identity = 117/195 (60.00%), Postives = 148/195 (75.90%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AKD+ F++D  A + +  GV++LA+ V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELEDP EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANPV + RGIEK     + ELK +SK +E  E +A VAA+S+G+  EVG +IAEAM +VG  GV+T+EE K     L VVEGMQF
Sbjct:    2 AKDIKFSED--ARRAMLRGVDQLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEGLKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIESKESIAQVAAISSGDE-EVGKLIAEAMERVGNDGVITIEESKGFATELDVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH601_SYNPX (60 kDa chaperonin 1 OS=Synechococcus sp. (strain WH8102) GN=groL1 PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.071e-56
Identity = 111/195 (56.92%), Postives = 151/195 (77.44%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + +N++  A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+I+NDGVT+AKE+ELED +EN G  L+RQAA+KTND AGDGTTT+ VLA  ++  G++ VAAGAN + + +GI+K S  LVS++K+ +K + DS  +A V  +SAGN+ EVG MIA+AM KVG++GV++LEEGKS E  L V EGM+F
Sbjct:    2 AKRIIYNEN--ARRALEKGIDILAESVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLRNVAAGANAITLKKGIDKASDFLVSKIKEQAKPIADSNAIAQVGTISAGNDEEVGKMIADAMDKVGKEGVISLEEGKSMETELEVTEGMRF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH601_ANASL (60 kDa chaperonin 1 OS=Anabaena sp. (strain L31) GN=groL1 PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.071e-56
Identity = 112/195 (57.44%), Postives = 152/195 (77.95%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + +N++  A + L+ G++ LA+ V VTLGPKGRNVVLE KYGAP+IVNDGVT+AKE+ELED +EN G  L+RQAA+KTND+AGDGTTT+ VLA  ++ EG++ VAAGAN +L+ RGI+K +  LV  +++ ++ VEDS+ +A V A+SAGN+ EV  MIAEA+ KVG++ V++LEEGKS    L V EGM+F
Sbjct:    2 AKRIIYNEN--ARRALERGIDILAEAVAVTLGPKGRNVVLEKKYGAPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDVAGDGTTTATVLAHAIVKEGLRNVAAGANAILLKRGIDKATNFLVDRIREHARSVEDSKAIAQVGAISAGNDDEVRQMIAEALDKVGKEAVISLEEGKSVTTELEVTEGMRF 194          
The following BLAST results are available for this feature:
BLAST of CN185246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_LEPIN6.281e-5756.4160 kDa chaperonin OS=Leptospira interrogans GN=gro... [more]
CH602_SYNSC6.281e-5756.9260 kDa chaperonin 2 OS=Synechococcus sp. (strain C... [more]
CH60_LISW61.071e-5660.0060 kDa chaperonin OS=Listeria welshimeri serovar 6... [more]
CH60_LISMO1.071e-5660.0060 kDa chaperonin OS=Listeria monocytogenes GN=gro... [more]
CH60_LISMH1.071e-5660.0060 kDa chaperonin OS=Listeria monocytogenes seroty... [more]
CH60_LISMF1.071e-5660.0060 kDa chaperonin OS=Listeria monocytogenes seroty... [more]
CH60_LISMC1.071e-5660.0060 kDa chaperonin OS=Listeria monocytogenes seroty... [more]
CH60_LISIN1.071e-5660.0060 kDa chaperonin OS=Listeria innocua GN=groL PE=3... [more]
CH601_SYNPX1.071e-5656.9260 kDa chaperonin 1 OS=Synechococcus sp. (strain W... [more]
CH601_ANASL1.071e-5657.4460 kDa chaperonin 1 OS=Anabaena sp. (strain L31) G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185246 ID=CN185246; Name=CN185246; organism=Citrus sinensis; type=EST; length=851bp
CTCCTCTCTGCCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCG
CACTTTCTGCCGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCAC
TGCCATGTCTTCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTG
ATAAGAAGCTTGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATT
TCTTCAAGTTCATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCG
CACACCTAAGATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGAT
ATGCCATGAAGAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTT
GGAGTTACCCTTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTA
CGGTGCCCCAAAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTG
AGTTAGAGGACCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
GCTGCCAAGACTAATGACTTGGCTGGTGATGGAACAACAACATCTGTTGT
TCTTGCGCAAGGGCTTATAGCTGAAGGTGTTAAGGTCGTGGCAGCTGGTG
CAAATCCTGTTCTTATCACAAGAGGCATTGAGAAGACATCTAAGGCTCTT
GTTTCTGAGCTCAAGCAGATGTCAAAAGAGGTTGAAGATAGTGAACTTGC
CGATGTAGCAGCTGTTAGTGCAGGGAACAACTATGAAGTTGGGAATATGA
TTGCAGAAGCCATGAGTAAAGTGGGACGTAAGGGTGTGGTGACCCTTGAA
GAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAATT
T
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