CN185246

Overview
NameCN185246
Unique NameCN185246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_ZYMMO (60 kDa chaperonin OS=Zymomonas mobilis GN=groL PE=3 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 5.502e-53
Identity = 109/196 (55.61%), Postives = 147/196 (75.00%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F++D  A +++  GV+ LAD V VTLGPKGRNVVL+  +GAP+I  DGV+VAKE+EL+D  EN+GA+++R+ A+KTNDLAGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+  +  +V  L+  SK V D +E+A V  +SA  + EVG  IAEAM KVG++GV+T+EE K  +  L VVEGMQF
Sbjct:    2 AAKDVKFSRD--ARERILRGVDILADAVKVTLGPKGRNVVLDKAFGAPRITKDGVSVAKEIELKDKFENMGAQMLREVASKTNDLAGDGTTTATVLAQAIVREGMKSVAAGMNPMDLKRGIDLAATKVVESLRSRSKPVSDFNEVAQVGIISANGDEEVGRRIAEAMEKVGKEGVITVEEAKGFDFELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_SYNWW (60 kDa chaperonin OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=groL PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.502e-53
Identity = 106/195 (54.36%), Postives = 152/195 (77.95%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            +K++ F ++  A + L+ GV+ LA+ V VTLGPKGRNVVL+ K+G+P I NDGVT+A++++L+DP EN+G +LV++ A KTND+AGDGTTT+ +LAQ +I EG+K VAAGANP+++ RGI++  KA+V E+K +SK VE  + +A VAA+SA ++ E+G +IA+AM KVGR GV+T+EE +S    L VVEGM F
Sbjct:    3 SKEIKFGEE--ARRALERGVDTLANAVKVTLGPKGRNVVLDRKFGSPTITNDGVTIARDIDLKDPWENLGCQLVKEVAIKTNDVAGDGTTTATLLAQAMIKEGLKNVAAGANPMIMRRGIDQAVKAVVDEIKTLSKPVESRDSIAQVAAISA-DDPEIGQLIADAMEKVGRDGVITVEESQSVGTSLEVVEGMNF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_SODGM (60 kDa chaperonin OS=Sodalis glossinidius (strain morsitans) GN=groL PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.502e-53
Identity = 110/196 (56.12%), Postives = 144/196 (73.47%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A V ELK++S    DS+ +A V  +SA  +  VG +IAEAM+KVG++GV+T+EEG   ++ L VVEGMQF
Sbjct:    2 AAKDVKFGND--ARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPVITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIVNEGLKAVAAGMNPMDLKRGIDKAVIAAVEELKKLSVPCSDSKAIAQVGTISANADETVGTLIAEAMAKVGKEGVITVEEGSGLQDELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_SODGL (60 kDa chaperonin OS=Sodalis glossinidius GN=groL PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.502e-53
Identity = 110/196 (56.12%), Postives = 144/196 (73.47%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A V ELK++S    DS+ +A V  +SA  +  VG +IAEAM+KVG++GV+T+EEG   ++ L VVEGMQF
Sbjct:    2 AAKDVKFGND--ARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPVITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIVNEGLKAVAAGMNPMDLKRGIDKAVIAAVEELKKLSVPCSDSKAIAQVGTISANADETVGTLIAEAMAKVGKEGVITVEEGSGLQDELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_SHEPA (60 kDa chaperonin OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=groL PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.502e-53
Identity = 108/196 (55.10%), Postives = 147/196 (75.00%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK++ F  D  A  K+  GVN LA+ V VTLGPKGRNVVL+  +GAP I  DGV+VAKE+ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A V+ELK +S+E  D++ +A V  +SA ++  +G +IA AM +VG++GV+T+EEG++ EN L VVEGMQF
Sbjct:    2 AAKEVLFGND--ARVKMLAGVNILANAVKVTLGPKGRNVVLDKSFGAPLITKDGVSVAKEIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVTEGLKAVAAGMNPMDLKRGIDKAVVAAVAELKNLSQECSDTKAIAQVGTISANSDESIGEIIATAMERVGKEGVITVEEGQALENELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_SHEHH (60 kDa chaperonin OS=Shewanella halifaxensis (strain HAW-EB4) GN=groL PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.502e-53
Identity = 108/196 (55.10%), Postives = 147/196 (75.00%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK++ F  D  A  K+  GVN LA+ V VTLGPKGRNVVL+  +GAP I  DGV+VAKE+ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A V+ELK +S+E  D++ +A V  +SA ++  +G +IA AM +VG++GV+T+EEG++ EN L VVEGMQF
Sbjct:    2 AAKEVLFGND--ARVKMLAGVNVLANAVKVTLGPKGRNVVLDKSFGAPLITKDGVSVAKEIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVTEGLKAVAAGMNPMDLKRGIDKAVIAAVAELKNLSQECSDTKAIAQVGTISANSDESIGEIIATAMERVGKEGVITVEEGQALENELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_SHEDO (60 kDa chaperonin OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=groL PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.502e-53
Identity = 107/196 (54.59%), Postives = 148/196 (75.51%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK++ F  D  A  K+  GVN LA+ V VTLGPKGRNVVL+  +G+P I  DGV+VA+E+ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A V+ELK++S+E  D++ +A V  +SA ++  +G +IA AM KVG++GV+T+EEG++ EN L VVEGMQF
Sbjct:    2 AAKEVKFGND--ARVKMLAGVNILANAVKVTLGPKGRNVVLDKSFGSPVITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIVVEGLKAVAAGMNPMDLKRGIDKAVIAAVAELKKLSQECSDTKAIAQVGTISANSDESIGEIIATAMEKVGKEGVITVEEGQALENELEVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_KLEP3 (60 kDa chaperonin OS=Klebsiella pneumoniae (strain 342) GN=groL PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.502e-53
Identity = 110/196 (56.12%), Postives = 143/196 (72.96%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A V ELK +S    DS+ +A V  +SA ++  VG +IAEAM KVG++GV+T+E+G   E+ L VVEGMQF
Sbjct:    2 AAKDVKFGND--ARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVIAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLEDELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_HAMD5 (60 kDa chaperonin OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=groL PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.502e-53
Identity = 108/196 (55.10%), Postives = 144/196 (73.47%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKDL F  D  A KK+  GVN LA+ V VTLGPKGRNVVL+  YGAP I  DGV+VA+++ELED  EN+GA+++++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A V ELK++SK  +DS E+A V  +SA  + +VG +I++AM +V  +GV+T+EE    E+ L VVEGMQF
Sbjct:    2 AAKDLKFGND--ARKKMLKGVNILANAVKVTLGPKGRNVVLDKSYGAPSITKDGVSVARDIELEDKFENMGAQMLKEVASKANDAAGDGTTTATVLAQSIVTEGLKAVAAGMNPMDLKRGIDKAVDAAVEELKKLSKPCKDSKEIAQVGTISANADEKVGTLISDAMKRVTNEGVITVEEASGLEDGLIVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_CLOBM (60 kDa chaperonin OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=groL PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.502e-53
Identity = 112/195 (57.44%), Postives = 144/195 (73.85%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK L F +   A + ++ GV+KLAD V VTLGPKGRNVVL+ K+G+P I NDGVT+A+E+ELEDP EN+GA+LV++ A KTND+AGDGTTT+ +LAQ +I EG+K V AGANP+ I  GI K  +  V E+K +SK V   E +A VAA+SA +  EVG +IA+AM +VG  GV+T+EE KS    L VVEGMQF
Sbjct:    2 AKSLLFGEQ--ARRSMEAGVDKLADTVRVTLGPKGRNVVLDKKFGSPLITNDGVTIAREIELEDPYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPIQIRTGIRKAVEKAVEEIKVISKPVNGKEDIARVAAISAASE-EVGKLIADAMERVGNDGVITVEESKSMGTDLEVVEGMQF 193          
The following BLAST results are available for this feature:
BLAST of CN185246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_ZYMMO5.502e-5355.6160 kDa chaperonin OS=Zymomonas mobilis GN=groL PE=... [more]
CH60_SYNWW5.502e-5354.3660 kDa chaperonin OS=Syntrophomonas wolfei subsp. ... [more]
CH60_SODGM5.502e-5356.1260 kDa chaperonin OS=Sodalis glossinidius (strain ... [more]
CH60_SODGL5.502e-5356.1260 kDa chaperonin OS=Sodalis glossinidius GN=groL ... [more]
CH60_SHEPA5.502e-5355.1060 kDa chaperonin OS=Shewanella pealeana (strain A... [more]
CH60_SHEHH5.502e-5355.1060 kDa chaperonin OS=Shewanella halifaxensis (stra... [more]
CH60_SHEDO5.502e-5354.5960 kDa chaperonin OS=Shewanella denitrificans (str... [more]
CH60_KLEP35.502e-5356.1260 kDa chaperonin OS=Klebsiella pneumoniae (strain... [more]
CH60_HAMD55.502e-5355.1060 kDa chaperonin OS=Hamiltonella defensa subsp. A... [more]
CH60_CLOBM5.502e-5357.4460 kDa chaperonin OS=Clostridium botulinum (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185246 ID=CN185246; Name=CN185246; organism=Citrus sinensis; type=EST; length=851bp
CTCCTCTCTGCCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCG
CACTTTCTGCCGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCAC
TGCCATGTCTTCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTG
ATAAGAAGCTTGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATT
TCTTCAAGTTCATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCG
CACACCTAAGATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGAT
ATGCCATGAAGAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTT
GGAGTTACCCTTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTA
CGGTGCCCCAAAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTG
AGTTAGAGGACCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
GCTGCCAAGACTAATGACTTGGCTGGTGATGGAACAACAACATCTGTTGT
TCTTGCGCAAGGGCTTATAGCTGAAGGTGTTAAGGTCGTGGCAGCTGGTG
CAAATCCTGTTCTTATCACAAGAGGCATTGAGAAGACATCTAAGGCTCTT
GTTTCTGAGCTCAAGCAGATGTCAAAAGAGGTTGAAGATAGTGAACTTGC
CGATGTAGCAGCTGTTAGTGCAGGGAACAACTATGAAGTTGGGAATATGA
TTGCAGAAGCCATGAGTAAAGTGGGACGTAAGGGTGTGGTGACCCTTGAA
GAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAATT
T
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