CN185246

Overview
NameCN185246
Unique NameCN185246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_FRATW (60 kDa chaperonin OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=groL PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.186e-53
Identity = 109/196 (55.61%), Postives = 146/196 (74.49%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK + F+ +  A  K+ +GVN LA+ V VTLGPKGRNVVL+  +GAP I  DGV+VAKE+ELED  EN+GA++V++ A+KT D+AGDGTTT+ VLAQ L+ EG+K VAAG NP+ + RGI+K +  LV ELK +SK   D   +  V  +SA ++  VG +IA+AM+KVG++GV+T+EEGK  E+ L VVEGMQF
Sbjct:    2 AAKQVLFSDEARA--KMLDGVNTLANAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAKEIELEDKFENMGAQIVKEVASKTADVAGDGTTTATVLAQALLTEGLKAVAAGMNPMDLKRGIDKATARLVEELKALSKPCSDPKSIEQVGTISANSDATVGKLIADAMAKVGKEGVITVEEGKGFEDELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_FRATN (60 kDa chaperonin OS=Francisella tularensis subsp. novicida (strain U112) GN=groL PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.186e-53
Identity = 109/196 (55.61%), Postives = 146/196 (74.49%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK + F+ +  A  K+ +GVN LA+ V VTLGPKGRNVVL+  +GAP I  DGV+VAKE+ELED  EN+GA++V++ A+KT D+AGDGTTT+ VLAQ L+ EG+K VAAG NP+ + RGI+K +  LV ELK +SK   D   +  V  +SA ++  VG +IA+AM+KVG++GV+T+EEGK  E+ L VVEGMQF
Sbjct:    2 AAKQVLFSDEARA--KMLDGVNTLANAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAKEIELEDKFENMGAQIVKEVASKTADVAGDGTTTATVLAQALLTEGLKAVAAGMNPMDLKRGIDKATAKLVEELKALSKPCSDPKSIEQVGTISANSDATVGKLIADAMAKVGKEGVITVEEGKGFEDELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_FRATM (60 kDa chaperonin OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=groL PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.186e-53
Identity = 109/196 (55.61%), Postives = 146/196 (74.49%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK + F+ +  A  K+ +GVN LA+ V VTLGPKGRNVVL+  +GAP I  DGV+VAKE+ELED  EN+GA++V++ A+KT D+AGDGTTT+ VLAQ L+ EG+K VAAG NP+ + RGI+K +  LV ELK +SK   D   +  V  +SA ++  VG +IA+AM+KVG++GV+T+EEGK  E+ L VVEGMQF
Sbjct:    2 AAKQVLFSDEARA--KMLDGVNTLANAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAKEIELEDKFENMGAQIVKEVASKTADVAGDGTTTATVLAQALLTEGLKAVAAGINPMDLKRGIDKATARLVEELKALSKPCSDPKSIEQVGTISANSDATVGKLIADAMAKVGKEGVITVEEGKGFEDELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_CHLL2 (60 kDa chaperonin OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=groL PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.186e-53
Identity = 107/195 (54.87%), Postives = 146/195 (74.87%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AKD+ F+ D  A  KL+ GV+KLA+ V VTLGP GRNV+++ K+GAP    DGVTVAKE+EL D VEN+GA++VR+ A+KT+D+AGDGTTT+ VLAQ +  EG+K VAAGA P+ + RGI++  K +V+EL+ +S+ +    E+A V  +SA N+ E+G +IAEAM KVG+ GV+T+EE K  +  L VVEGMQF
Sbjct:    3 AKDIIFDSDARA--KLKVGVDKLANAVKVTLGPAGRNVLIDKKFGAPTSTKDGVTVAKEIELADAVENMGAQMVREVASKTSDVAGDGTTTATVLAQAIYREGLKNVAAGARPIDLKRGIDRAVKEVVAELRNISRSISGKKEIAQVGTISANNDPEIGELIAEAMDKVGKDGVITVEEAKGMDTELKVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH603_BURCH (60 kDa chaperonin 3 OS=Burkholderia cenocepacia (strain HI2424) GN=groL3 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.186e-53
Identity = 109/195 (55.90%), Postives = 150/195 (76.92%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AKD+ F +DG A +++  GVN LAD V VTLGPKGRNVV+E  +GAP I  DGV+VAKE+EL+D  EN+GA++V+Q A+KT D+AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A++ EL+++S+ +    E+A V A+SA ++  +G +IA+AM KVG+ GV+T+E+GKS EN L VVEGMQF
Sbjct:    3 AKDVKF-RDG-ARQQIVKGVNVLADAVKVTLGPKGRNVVIERGFGAPVITKDGVSVAKEIELKDRFENMGAQIVKQVASKTADVAGDGTTTATVLAQAIVQEGMKHVAAGMNPMDLKRGIDKAVGAVLDELRKLSRPISTHKEIAQVGAISANSDEAIGKIIADAMEKVGKDGVITVEDGKSLENELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH602_VIBC3 (60 kDa chaperonin 2 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=groL2 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.186e-53
Identity = 109/196 (55.61%), Postives = 145/196 (73.98%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  +N+GA++V++ A++ ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A V ELK +S    D++ +A V  +SA ++  VGN+IAEAM KVGR GV+T+EEG++ ++ L VVEGMQF
Sbjct:    2 AAKDVRFGND--ARVKMLEGVNILADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFQNMGAQMVKEVASQANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVIAAVEELKALSVPCADTKAIAQVGTISANSDSSVGNIIAEAMEKVGRDGVITVEEGQALQDELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH602_BURCA (60 kDa chaperonin 2 OS=Burkholderia cenocepacia (strain AU 1054) GN=groL2 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.186e-53
Identity = 109/195 (55.90%), Postives = 150/195 (76.92%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AKD+ F +DG A +++  GVN LAD V VTLGPKGRNVV+E  +GAP I  DGV+VAKE+EL+D  EN+GA++V+Q A+KT D+AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A++ EL+++S+ +    E+A V A+SA ++  +G +IA+AM KVG+ GV+T+E+GKS EN L VVEGMQF
Sbjct:    3 AKDVKF-RDG-ARQQIVKGVNVLADAVKVTLGPKGRNVVIERGFGAPVITKDGVSVAKEIELKDRFENMGAQIVKQVASKTADVAGDGTTTATVLAQAIVQEGMKHVAAGMNPMDLKRGIDKAVGAVLDELRKLSRPISTHKEIAQVGAISANSDEAIGKIIADAMEKVGKDGVITVEDGKSLENELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH601_VIBCH (60 kDa chaperonin 1 OS=Vibrio cholerae GN=groL1 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.186e-53
Identity = 109/196 (55.61%), Postives = 145/196 (73.98%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  +N+GA++V++ A++ ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A V ELK +S    D++ +A V  +SA ++  VGN+IAEAM KVGR GV+T+EEG++ ++ L VVEGMQF
Sbjct:    2 AAKDVRFGND--ARVKMLEGVNILADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFQNMGAQMVKEVASQANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVIAAVEELKALSVPCADTKAIAQVGTISANSDSSVGNIIAEAMEKVGRDGVITVEEGQALQDELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_YERPY (60 kDa chaperonin OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=groL PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.386e-53
Identity = 109/196 (55.61%), Postives = 144/196 (73.47%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +G+P I  DGV+VA+E+ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ +I EG+K VAAG NP+ + RGI+K   A V ELK++S    DS+ +A V  +SA ++  VG +IA+AM KVG++GV+T+EEG   ++ L VVEGMQF
Sbjct:    2 AAKDVKFGND--ARIKMLRGVNILADAVKVTLGPKGRNVVLDKSFGSPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIITEGLKAVAAGMNPMDLKRGIDKAVIAAVEELKKLSVPCSDSKAIAQVGTISANSDSTVGELIAQAMEKVGKEGVITVEEGSGLQDELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_YERPS (60 kDa chaperonin OS=Yersinia pseudotuberculosis GN=groL PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.386e-53
Identity = 109/196 (55.61%), Postives = 144/196 (73.47%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +G+P I  DGV+VA+E+ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ +I EG+K VAAG NP+ + RGI+K   A V ELK++S    DS+ +A V  +SA ++  VG +IA+AM KVG++GV+T+EEG   ++ L VVEGMQF
Sbjct:    2 AAKDVKFGND--ARIKMLRGVNILADAVKVTLGPKGRNVVLDKSFGSPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIITEGLKAVAAGMNPMDLKRGIDKAVIAAVEELKKLSVPCSDSKAIAQVGTISANSDSTVGELIAQAMEKVGKEGVITVEEGSGLQDELDVVEGMQF 195          
The following BLAST results are available for this feature:
BLAST of CN185246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_FRATW7.186e-5355.6160 kDa chaperonin OS=Francisella tularensis subsp.... [more]
CH60_FRATN7.186e-5355.6160 kDa chaperonin OS=Francisella tularensis subsp.... [more]
CH60_FRATM7.186e-5355.6160 kDa chaperonin OS=Francisella tularensis subsp.... [more]
CH60_CHLL27.186e-5354.8760 kDa chaperonin OS=Chlorobium limicola (strain D... [more]
CH603_BURCH7.186e-5355.9060 kDa chaperonin 3 OS=Burkholderia cenocepacia (s... [more]
CH602_VIBC37.186e-5355.6160 kDa chaperonin 2 OS=Vibrio cholerae serotype O1... [more]
CH602_BURCA7.186e-5355.9060 kDa chaperonin 2 OS=Burkholderia cenocepacia (s... [more]
CH601_VIBCH7.186e-5355.6160 kDa chaperonin 1 OS=Vibrio cholerae GN=groL1 PE... [more]
CH60_YERPY9.386e-5355.6160 kDa chaperonin OS=Yersinia pseudotuberculosis s... [more]
CH60_YERPS9.386e-5355.6160 kDa chaperonin OS=Yersinia pseudotuberculosis G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185246 ID=CN185246; Name=CN185246; organism=Citrus sinensis; type=EST; length=851bp
CTCCTCTCTGCCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCG
CACTTTCTGCCGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCAC
TGCCATGTCTTCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTG
ATAAGAAGCTTGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATT
TCTTCAAGTTCATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCG
CACACCTAAGATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGAT
ATGCCATGAAGAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTT
GGAGTTACCCTTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTA
CGGTGCCCCAAAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTG
AGTTAGAGGACCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
GCTGCCAAGACTAATGACTTGGCTGGTGATGGAACAACAACATCTGTTGT
TCTTGCGCAAGGGCTTATAGCTGAAGGTGTTAAGGTCGTGGCAGCTGGTG
CAAATCCTGTTCTTATCACAAGAGGCATTGAGAAGACATCTAAGGCTCTT
GTTTCTGAGCTCAAGCAGATGTCAAAAGAGGTTGAAGATAGTGAACTTGC
CGATGTAGCAGCTGTTAGTGCAGGGAACAACTATGAAGTTGGGAATATGA
TTGCAGAAGCCATGAGTAAAGTGGGACGTAAGGGTGTGGTGACCCTTGAA
GAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAATT
T
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