CN185246

Overview
NameCN185246
Unique NameCN185246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_TROWH (60 kDa chaperonin OS=Tropheryma whipplei GN=groL PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.386e-53
Identity = 109/195 (55.90%), Postives = 151/195 (77.44%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + FN+D  A + L+ G+N LAD V VTLGP+GRNVVLE K+GAP I NDGVT+AKE+EL+DP E IGA+LV++ A KT+D+AGDGTTTSVVLAQ ++ EG+K VAAGA+P+ + RGIEK+  A+   L   +KEVE ++E+A  A++SAG+  ++G++IA+A+ KVG++GVVT+EE  +    L + EGM+F
Sbjct:    2 AKKITFNED--ARRGLERGLNTLADTVKVTLGPRGRNVVLEKKWGAPVITNDGVTIAKEIELDDPYEKIGAELVKEVAKKTDDVAGDGTTTSVVLAQAMVREGLKNVAAGADPISLRRGIEKSVAAVSKALLTSAKEVETEAEIAACASISAGDP-QIGDIIAQALEKVGKEGVVTVEESNTFGTELEITEGMRF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_TROW8 (60 kDa chaperonin OS=Tropheryma whipplei (strain TW08/27) GN=groL PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.386e-53
Identity = 109/195 (55.90%), Postives = 151/195 (77.44%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + FN+D  A + L+ G+N LAD V VTLGP+GRNVVLE K+GAP I NDGVT+AKE+EL+DP E IGA+LV++ A KT+D+AGDGTTTSVVLAQ ++ EG+K VAAGA+P+ + RGIEK+  A+   L   +KEVE ++E+A  A++SAG+  ++G++IA+A+ KVG++GVVT+EE  +    L + EGM+F
Sbjct:    2 AKKITFNED--ARRGLERGLNTLADTVKVTLGPRGRNVVLEKKWGAPVITNDGVTIAKEIELDDPYEKIGAELVKEVAKKTDDVAGDGTTTSVVLAQAMVREGLKNVAAGADPISLRRGIEKSVAAVSKALLTSAKEVETEAEIAACASISAGDP-QIGDIIAQALEKVGKEGVVTVEESNTFGTELEITEGMRF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_THIDA (60 kDa chaperonin OS=Thiobacillus denitrificans (strain ATCC 25259) GN=groL PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.386e-53
Identity = 106/196 (54.08%), Postives = 147/196 (75.00%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F     A  ++  GVN LAD V VTLGPKGRNVVL+  +GAP +  DGV+VAKE+EL+D +EN+GA++V++ A+KT+D+AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A+  ELK++SK    S E+A V ++SA ++  +G +IA+AM KVG++GV+T+E+G   EN L VVEGMQF
Sbjct:    2 AAKDVRFGDS--ARHRMVAGVNVLADAVKVTLGPKGRNVVLDRSFGAPTVTKDGVSVAKEIELKDKLENMGAQMVKEVASKTSDVAGDGTTTATVLAQSIVNEGMKFVAAGMNPMDLKRGIDKAVNAITEELKKISKPCTTSKEIAQVGSISANSDAPIGQIIADAMDKVGKEGVITVEDGSGLENELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_SHESW (60 kDa chaperonin OS=Shewanella sp. (strain W3-18-1) GN=groL PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.386e-53
Identity = 109/196 (55.61%), Postives = 147/196 (75.00%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK++ F  D  A  K+  GVN LA+ V VTLGPKGRNVVL+  +G+P I  DGV+VAKE+ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A V+ELK +S+   DS+ +A VA +SA ++  +G +IA AM KVG++GV+T+EEG++ EN L VVEGMQF
Sbjct:    2 AAKEVVFGND--ARVKMLAGVNILANAVKVTLGPKGRNVVLDKSFGSPLITKDGVSVAKEIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVTEGLKAVAAGMNPMDLKRGIDKAVIAAVAELKALSQPCADSKAIAQVATISANSDESIGEIIATAMEKVGKEGVITVEEGQALENELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_SHEPC (60 kDa chaperonin OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=groL PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.386e-53
Identity = 109/196 (55.61%), Postives = 147/196 (75.00%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK++ F  D  A  K+  GVN LA+ V VTLGPKGRNVVL+  +G+P I  DGV+VAKE+ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A V+ELK +S+   DS+ +A VA +SA ++  +G +IA AM KVG++GV+T+EEG++ EN L VVEGMQF
Sbjct:    2 AAKEVVFGND--ARVKMLAGVNILANAVKVTLGPKGRNVVLDKSFGSPLITKDGVSVAKEIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVTEGLKAVAAGMNPMDLKRGIDKAVIAAVAELKALSQPCADSKAIAQVATISANSDESIGEIIATAMEKVGKEGVITVEEGQALENELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_SHEON (60 kDa chaperonin OS=Shewanella oneidensis GN=groL PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.386e-53
Identity = 108/196 (55.10%), Postives = 147/196 (75.00%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK++ F  D  A  K+  GVN LA+ V VTLGPKGRNVVL+  +G+P I  DGV+VAKE+ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A V+ELK +S++  DS+ +A V  +SA ++  +G +IA AM KVG++GV+T+EEG++ EN L VVEGMQF
Sbjct:    2 AAKEVVFGND--ARVKMLAGVNILANAVKVTLGPKGRNVVLDKSFGSPLITKDGVSVAKEIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVTEGLKAVAAGMNPMDLKRGIDKAVIAAVAELKNLSQDCADSKAIAQVGTISANSDESIGQIIATAMEKVGKEGVITVEEGQALENELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_PETMO (60 kDa chaperonin OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=groL PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.386e-53
Identity = 107/195 (54.87%), Postives = 146/195 (74.87%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK L FN+D  A + L+ GVN +AD V +TLGPKGRNVVLE  +G+P I NDGV++AKE+EL+D  E +GA+LV++ A+KTND+AGDGTTT+ VLAQ +I EG+K VAAGANP+L+  GI K +   V +++  S+++   E +A VA++SA NN E+GN+IAEAM KVG  GV+T+E+ K+ E  +   EGMQF
Sbjct:    2 AKMLKFNED--ARRALERGVNTVADAVKITLGPKGRNVVLEKSWGSPTITNDGVSIAKEIELKDKFEALGAELVKEVASKTNDVAGDGTTTATVLAQAMIQEGLKNVAAGANPILMRNGIAKATDKAVEQIRNASRKLSSKEDIAHVASISA-NNEEIGNIIAEAMDKVGEDGVITVEDSKTLETYVEFTEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_PEDPA (60 kDa chaperonin OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=groL PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.386e-53
Identity = 110/195 (56.41%), Postives = 142/195 (72.82%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK++ F++D  A  K+  GV+KLAD V  T+GPKGRNVVLE  YG+P I NDGVT+AK +ELED  EN+GAKLV + A+KTND+AGDGTTT+ VL Q ++ EG+K V AGANPV I RGIEK +   V  L +MS EV+   ++A +A++S+ N  EVG +IA AM KVG  GV+T+EE +  +  L VVEGMQF
Sbjct:    2 AKEIKFSED--ARTKMLKGVDKLADTVKSTIGPKGRNVVLEQSYGSPTITNDGVTIAKAIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVNEGMKNVTAGANPVGIRRGIEKATSKAVEALHKMSHEVKTKDDIAQIASISSANP-EVGKLIANAMEKVGNDGVITIEESRGVDTTLDVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_PANAN (60 kDa chaperonin (Fragment) OS=Pantoea ananas GN=groL PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.386e-53
Identity = 109/196 (55.61%), Postives = 144/196 (73.47%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ +I EG+K VAAG NP+ + RGI++   A V ELK++S    DS+ +A V  +SA ++  VG +IA+AM KVG++GV+T+EEG   ++ L VVEGMQF
Sbjct:    2 AAKDVKFGND--ARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIITEGLKAVAAGMNPMDLKRGIDQAVIAAVEELKKLSVPCSDSKAIAQVGTISANSDETVGTLIAQAMEKVGKEGVITVEEGTGLQDELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_GEOMG (60 kDa chaperonin OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=groL PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.386e-53
Identity = 105/195 (53.85%), Postives = 146/195 (74.87%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + F+++G     +  GVN LAD V VTLGPKGRNV++E  +G+P I  DGVTVAKE+ELED  EN+GA+LV++ A+KT+D+AGDGTTT+ VLAQ +  +G K+VAAG NP+ I RGI+   + +V+EL+++SK ++D  E+A V  +SA N+  +G +IAEAM KVG++GV+T+EE K+ E  L  VEGMQF
Sbjct:    2 AKIIKFDQEG--RNAILKGVNTLADAVKVTLGPKGRNVIIEKSFGSPLITKDGVTVAKEIELEDKFENMGAQLVKEVASKTSDVAGDGTTTATVLAQAIYRQGSKLVAAGHNPMEIKRGIDSAVETIVAELQKISKPIKDHKEIAQVGTISANNDKTIGGIIAEAMEKVGKEGVITVEEAKAMETSLETVEGMQF 194          
The following BLAST results are available for this feature:
BLAST of CN185246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_TROWH9.386e-5355.9060 kDa chaperonin OS=Tropheryma whipplei GN=groL P... [more]
CH60_TROW89.386e-5355.9060 kDa chaperonin OS=Tropheryma whipplei (strain T... [more]
CH60_THIDA9.386e-5354.0860 kDa chaperonin OS=Thiobacillus denitrificans (s... [more]
CH60_SHESW9.386e-5355.6160 kDa chaperonin OS=Shewanella sp. (strain W3-18-... [more]
CH60_SHEPC9.386e-5355.6160 kDa chaperonin OS=Shewanella putrefaciens (stra... [more]
CH60_SHEON9.386e-5355.1060 kDa chaperonin OS=Shewanella oneidensis GN=groL... [more]
CH60_PETMO9.386e-5354.8760 kDa chaperonin OS=Petrotoga mobilis (strain DSM... [more]
CH60_PEDPA9.386e-5356.4160 kDa chaperonin OS=Pediococcus pentosaceus (stra... [more]
CH60_PANAN9.386e-5355.6160 kDa chaperonin (Fragment) OS=Pantoea ananas GN=... [more]
CH60_GEOMG9.386e-5353.8560 kDa chaperonin OS=Geobacter metallireducens (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185246 ID=CN185246; Name=CN185246; organism=Citrus sinensis; type=EST; length=851bp
CTCCTCTCTGCCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCG
CACTTTCTGCCGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCAC
TGCCATGTCTTCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTG
ATAAGAAGCTTGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATT
TCTTCAAGTTCATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCG
CACACCTAAGATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGAT
ATGCCATGAAGAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTT
GGAGTTACCCTTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTA
CGGTGCCCCAAAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTG
AGTTAGAGGACCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
GCTGCCAAGACTAATGACTTGGCTGGTGATGGAACAACAACATCTGTTGT
TCTTGCGCAAGGGCTTATAGCTGAAGGTGTTAAGGTCGTGGCAGCTGGTG
CAAATCCTGTTCTTATCACAAGAGGCATTGAGAAGACATCTAAGGCTCTT
GTTTCTGAGCTCAAGCAGATGTCAAAAGAGGTTGAAGATAGTGAACTTGC
CGATGTAGCAGCTGTTAGTGCAGGGAACAACTATGAAGTTGGGAATATGA
TTGCAGAAGCCATGAGTAAAGTGGGACGTAAGGGTGTGGTGACCCTTGAA
GAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAATT
T
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