CN185246

Overview
NameCN185246
Unique NameCN185246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2470 contig Csv1_Contig2470:1..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_ERWAP (60 kDa chaperonin (Fragment) OS=Erwinia aphidicola GN=groL PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.386e-53
Identity = 109/196 (55.61%), Postives = 144/196 (73.47%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ +I EG+K VAAG NP+ + RGI++   A V ELK++S    DS+ +A V  +SA ++  VG +IA+AM KVG++GV+T+EEG   ++ L VVEGMQF
Sbjct:    2 AAKDVKFGND--ARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIITEGLKAVAAGMNPMDLKRGIDQAVIAAVDELKKLSVPCSDSKAIAQVGTISANSDATVGELIAQAMEKVGKEGVITVEEGTGLQDELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_ENTFA (60 kDa chaperonin OS=Enterococcus faecalis GN=groL PE=3 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 9.386e-53
Identity = 113/195 (57.95%), Postives = 142/195 (72.82%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK++ F +D  A   +  GV+ LAD V VTLGPKGRNVVLE  +G+P I NDGVT+AKE+ELED  EN+GAKLV + A+KTND+AGDGTTT+ VL Q ++ EG+K V AGANP+ I RGIE  +K  V EL  +S  V+  E +A VAAVS+G+  +VG +IA+AM KVG  GV+T+EE K  E  L VVEGMQF
Sbjct:    2 AKEIKFAEDARAA--MLRGVDVLADTVKVTLGPKGRNVVLEKSFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGLKNVTAGANPLGIRRGIELATKTAVEELHNISSVVDSKEAIAQVAAVSSGSE-KVGQLIADAMEKVGNDGVITIEESKGIETELDVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_CYACA (60 kDa chaperonin, chloroplastic OS=Cyanidium caldarium GN=groL PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.386e-53
Identity = 96/184 (52.17%), Postives = 143/184 (77.72%), Query Frame = 3
Query:  303 AMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            A K L+ G++ LA  V +TLGPKGRNVV++ KYGAP+I+NDG+ +AKE+EL++ +EN G  L+RQAAAKTND+AGDGTTT+ VLA  +I +G+K V+ G+NP+ + +GIEK S+ ++ ++ + S+ +ED   +  V+++SAGN+ E+G+MIA A+ KVG+ GV++LEEGKSA   L + +GM+F
Sbjct:   11 ARKALERGIDVLAKAVSITLGPKGRNVVIDKKYGAPQIINDGIAIAKEIELKNHMENTGVSLIRQAAAKTNDVAGDGTTTATVLAHAIIKQGLKYVSTGSNPISLKKGIEKASQFIIQKISENSRPIEDVKSIIQVSSISAGNDEEIGSMIANAIQKVGKDGVISLEEGKSAITELEITQGMKF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_CLOAB (60 kDa chaperonin OS=Clostridium acetobutylicum GN=groL PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.386e-53
Identity = 111/195 (56.92%), Postives = 145/195 (74.36%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + + ++  A + +Q GV+KLAD V VTLGPKGRNVVL+ K+GAP I NDGV++AKE+ELEDP EN+GA+LV++ A KTND+AGDGTTT+ +LAQ +I EG+K V AGANP+LI  GI       V  LK++SK V   E +A VA++SA +  E+G +IA+AM KVG +GV+T+EE KS    L VVEGMQF
Sbjct:    2 AKQILYGEE--ARRSMQKGVDKLADTVKVTLGPKGRNVVLDKKFGAPLITNDGVSIAKEIELEDPYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPMLIRNGIRLAVDKTVEGLKKVSKNVNGKEDIARVASISAADP-EIGKLIADAMEKVGNEGVITVEESKSMGTELDVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_CAMC5 (60 kDa chaperonin OS=Campylobacter curvus (strain 525.92) GN=groL PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.386e-53
Identity = 104/195 (53.33%), Postives = 145/195 (74.36%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK++ ++ D  A  +L  GV KL D V VT+GP+GRNV+++  +GAP I  DGV+VAKEVEL+D +EN+GA LVR+ A+KTND AGDGTTT+ VLA  +  EG++ V AGANP+ + RG++K   AL+ ELK ++K+V  S E+A +A +SA ++  +G +IA+AM KVG+ GV+T+EE KS E+ L VVEGMQF
Sbjct:    2 AKEIFYSDD--ARNRLYEGVRKLNDAVKVTMGPRGRNVLIQKSFGAPSITKDGVSVAKEVELKDTIENMGASLVREVASKTNDQAGDGTTTATVLAHAIFKEGLRNVTAGANPIEVKRGMDKEVAALIDELKNIAKKVSGSKEIAQIATISANSDESIGKLIADAMEKVGKDGVITVEEAKSIEDELNVVEGMQF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_BORPE (60 kDa chaperonin OS=Bordetella pertussis GN=groL PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.386e-53
Identity = 110/196 (56.12%), Postives = 146/196 (74.49%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK + F  +  A  ++  GVN LA+ V  TLGPKGRNVVLE  +GAP +  DGV+VAKE+EL+D  ENIGA+LV+  A+KT+D AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A V ELK++SK V  S E+A V ++SA ++  +G +IA+AM KVG++GV+T+E+GKS EN L VVEGMQF
Sbjct:    2 AAKQVLFADE--ARVRIVRGVNVLANAVKTTLGPKGRNVVLERSFGAPTVTKDGVSVAKEIELKDKFENIGAQLVKDVASKTSDNAGDGTTTATVLAQAVVQEGLKYVAAGFNPIDLKRGIDKAVAAAVEELKKLSKPVTTSKEIAQVGSISANSDASIGQIIADAMDKVGKEGVITVEDGKSLENELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_BORPA (60 kDa chaperonin OS=Bordetella parapertussis GN=groL PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.386e-53
Identity = 110/196 (56.12%), Postives = 146/196 (74.49%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK + F  +  A  ++  GVN LA+ V  TLGPKGRNVVLE  +GAP +  DGV+VAKE+EL+D  ENIGA+LV+  A+KT+D AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A V ELK++SK V  S E+A V ++SA ++  +G +IA+AM KVG++GV+T+E+GKS EN L VVEGMQF
Sbjct:    2 AAKQVLFADE--ARVRIVRGVNVLANAVKTTLGPKGRNVVLERSFGAPTVTKDGVSVAKEIELKDKFENIGAQLVKDVASKTSDNAGDGTTTATVLAQAVVQEGLKYVAAGFNPIDLKRGIDKAVAAAVEELKKLSKPVTTSKEIAQVGSISANSDASIGQIIADAMDKVGKEGVITVEDGKSLENELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_BORBR (60 kDa chaperonin OS=Bordetella bronchiseptica GN=groL PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.386e-53
Identity = 110/196 (56.12%), Postives = 146/196 (74.49%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK + F  +  A  ++  GVN LA+ V  TLGPKGRNVVLE  +GAP +  DGV+VAKE+EL+D  ENIGA+LV+  A+KT+D AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A V ELK++SK V  S E+A V ++SA ++  +G +IA+AM KVG++GV+T+E+GKS EN L VVEGMQF
Sbjct:    2 AAKQVLFADE--ARVRIVRGVNVLANAVKTTLGPKGRNVVLERSFGAPTVTKDGVSVAKEIELKDKFENIGAQLVKDVASKTSDNAGDGTTTATVLAQAVVQEGLKYVAAGFNPIDLKRGIDKAVAAAVEELKKLSKPVTTSKEIAQVGSISANSDASIGQIIADAMDKVGKEGVITVEDGKSLENELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_BORA1 (60 kDa chaperonin OS=Bordetella avium (strain 197N) GN=groL PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.386e-53
Identity = 111/196 (56.63%), Postives = 145/196 (73.98%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK + F  D  A  ++  GVN LA+ V  TLGPKGRNVVLE  +GAP +  DGV+VAKE+EL+D  ENIGA+LV+  A+KT+D AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A V ELK+ SK V  S E+A V ++SA ++  +G +IA+AM KVG++GV+T+E+GKS EN L VVEGMQF
Sbjct:    2 AAKQVLFADD--ARVRIVRGVNVLANAVKTTLGPKGRNVVLERSFGAPTVTKDGVSVAKEIELKDKFENIGAQLVKDVASKTSDNAGDGTTTATVLAQAIVQEGLKYVAAGFNPIDLKRGIDKAVAAAVVELKKASKPVTTSKEIAQVGSISANSDSSIGQIIADAMDKVGKEGVITVEDGKSLENELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_AKKM8 (60 kDa chaperonin OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=groL PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.386e-53
Identity = 109/195 (55.90%), Postives = 144/195 (73.85%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + F  D  A + L  GV ++A  V  TLGP GRNVV++ K+G+P I  DGVTVAKE+ELEDP EN+GA+LVR+ ++KTND+AGDGTTT+ VLA+ +  EG++ V AGANP+ + RGI K + ++V ELK++SK V+ S E+A VA VSA  + E+GN+IAEAM KVG+ G +T+EE K  E  L VVEGMQF
Sbjct:    2 AKQIQF--DETARQALLRGVEQIAKAVKSTLGPAGRNVVIDKKFGSPLITKDGVTVAKEIELEDPFENMGAQLVREVSSKTNDVAGDGTTTATVLAESIYREGLRNVTAGANPISLQRGIMKAADSVVEELKKISKPVDSSKEVAQVATVSANWDAEIGNIIAEAMDKVGKDGTITVEEAKGIETTLDVVEGMQF 194          
The following BLAST results are available for this feature:
BLAST of CN185246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_ERWAP9.386e-5355.6160 kDa chaperonin (Fragment) OS=Erwinia aphidicola... [more]
CH60_ENTFA9.386e-5357.9560 kDa chaperonin OS=Enterococcus faecalis GN=groL... [more]
CH60_CYACA9.386e-5352.1760 kDa chaperonin, chloroplastic OS=Cyanidium cald... [more]
CH60_CLOAB9.386e-5356.9260 kDa chaperonin OS=Clostridium acetobutylicum GN... [more]
CH60_CAMC59.386e-5353.3360 kDa chaperonin OS=Campylobacter curvus (strain ... [more]
CH60_BORPE9.386e-5356.1260 kDa chaperonin OS=Bordetella pertussis GN=groL ... [more]
CH60_BORPA9.386e-5356.1260 kDa chaperonin OS=Bordetella parapertussis GN=g... [more]
CH60_BORBR9.386e-5356.1260 kDa chaperonin OS=Bordetella bronchiseptica GN=... [more]
CH60_BORA19.386e-5356.6360 kDa chaperonin OS=Bordetella avium (strain 197N... [more]
CH60_AKKM89.386e-5355.9060 kDa chaperonin OS=Akkermansia muciniphila (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185246 ID=CN185246; Name=CN185246; organism=Citrus sinensis; type=EST; length=851bp
CTCCTCTCTGCCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCG
CACTTTCTGCCGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCAC
TGCCATGTCTTCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTG
ATAAGAAGCTTGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATT
TCTTCAAGTTCATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCG
CACACCTAAGATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGAT
ATGCCATGAAGAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTT
GGAGTTACCCTTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTA
CGGTGCCCCAAAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTG
AGTTAGAGGACCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
GCTGCCAAGACTAATGACTTGGCTGGTGATGGAACAACAACATCTGTTGT
TCTTGCGCAAGGGCTTATAGCTGAAGGTGTTAAGGTCGTGGCAGCTGGTG
CAAATCCTGTTCTTATCACAAGAGGCATTGAGAAGACATCTAAGGCTCTT
GTTTCTGAGCTCAAGCAGATGTCAAAAGAGGTTGAAGATAGTGAACTTGC
CGATGTAGCAGCTGTTAGTGCAGGGAACAACTATGAAGTTGGGAATATGA
TTGCAGAAGCCATGAGTAAAGTGGGACGTAAGGGTGTGGTGACCCTTGAA
GAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAATT
T
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