CN185246

Overview
NameCN185246
Unique NameCN185246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH602_SORC5 (60 kDa chaperonin 2 OS=Sorangium cellulosum (strain So ce56) GN=groL2 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.386e-53
Identity = 105/196 (53.57%), Postives = 148/196 (75.51%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK++ +N+   +M  +  GVN LAD V VTLGPKGRNVV+E  +G+P +  DGVTVAKE+ELE+  EN+GA++VR+ A+KT+D+AGDGTTT+ VLAQ +  EG K+VAAG NP+ I RGI+K  +A+V  L+  +K+ +D+ E+A V  +SA  +  +G ++A+AM KVG++GV+T+EE KSA+  L VVEGMQF
Sbjct:    2 AAKEIIYNESARSM--ILAGVNALADAVKVTLGPKGRNVVIEKSFGSPTVTKDGVTVAKEIELENRFENMGAQMVREVASKTSDIAGDGTTTATVLAQAIYREGSKLVAAGHNPMEIKRGIDKAVEAIVEHLRGSAKQTKDAKEIAQVGTISANGDETIGKLLADAMEKVGKEGVITVEEAKSADTTLDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH601_VIBHA (60 kDa chaperonin 1 OS=Vibrio harveyi GN=groL1 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.386e-53
Identity = 109/196 (55.61%), Postives = 145/196 (73.98%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  +N+GA++V++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A V + K+ S E  D++ +A V  +SA ++  VGN+IAEAM KVGR GV+T+EEG++ ++ L VVEGMQF
Sbjct:    2 AAKDVKFGND--ARVKMLEGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFQNMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVIAAVEQPKRASVECTDTKAIAQVGTISANSDSSVGNIIAEAMEKVGRDGVITVEEGQALQDELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH601_RHOPA (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris GN=groL1 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.386e-53
Identity = 108/196 (55.10%), Postives = 145/196 (73.98%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F+ D  A  ++  GV+ LA+ V VTLGPKGRNV++E  +GAP+I  DGVTVAKEVELED  EN+GA++VR+ A+KTNDLAGDGTTT+ VLAQ ++ EG K VAAG NP+ + RGIE    A+V ++++ +K V  S E+A V  +SA  +  +G MIA+AM KVG +GV+T+EE KS E  + +VEGM+F
Sbjct:    2 AAKDVKFSGD--ARDRMLRGVDVLANAVKVTLGPKGRNVLIEKSFGAPRITKDGVTVAKEVELEDKFENMGAQMVREVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIEIAVAAVVKDIQKRAKPVASSAEIAQVGTISANGDAPIGKMIAQAMQKVGNEGVITVEENKSLETEVDIVEGMKF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH601_AZOSB (60 kDa chaperonin 1 OS=Azoarcus sp. (strain BH72) GN=groL1 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.386e-53
Identity = 105/196 (53.57%), Postives = 149/196 (76.02%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK++ F     A +++  GVN LA+ V VTLGPKGRNVVLE  +GAP +  DGV+VAKE+EL+D  EN+GA++V++ A+KT+D+AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A + ELK++SK    + E+A V ++SA ++ ++G +IA+AM KVG++GV+T+E+GKS  N L VVEGMQF
Sbjct:    2 AAKEVKFGDS--ARERMVAGVNVLANAVKVTLGPKGRNVVLERSFGAPTVTKDGVSVAKEIELKDKFENMGAQMVKEVASKTSDIAGDGTTTATVLAQSIVREGMKFVAAGMNPMDLKRGIDKAVVATIEELKKLSKPCSTNKEIAQVGSISANSDADIGGIIAQAMEKVGKEGVITVEDGKSLNNELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_XYLFM (60 kDa chaperonin OS=Xylella fastidiosa (strain M12) GN=groL PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.226e-52
Identity = 109/196 (55.61%), Postives = 147/196 (75.00%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEV-EDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK++ F++   A  ++  GVN LA+ V  TLGPKGRNVVL+  +G+P I  DGV+VAKE+EL D  EN+GA+++++ A+KTND AGDGTTT+ VLAQ LI EG K VAAG NP+ + RGI+K   A V+ELK++SK   +D  +A VA +SA ++  +GN+IAEAM KVG++GV+T+EEG + EN L VVEGMQF
Sbjct:    2 AAKEIIFSEK--ARSRMVYGVNLLANAVKATLGPKGRNVVLDKNFGSPIITKDGVSVAKEIELADKFENMGAQMLKEVASKTNDHAGDGTTTATVLAQALIREGCKAVAAGMNPMDLKRGIDKAVIAAVTELKKISKPTSDDKAIAQVATISANSDESIGNIIAEAMKKVGKEGVITIEEGTTLENELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_WOLSU (60 kDa chaperonin OS=Wolinella succinogenes GN=groL PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.226e-52
Identity = 101/196 (51.53%), Postives = 147/196 (75.00%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            A+K+++F+    A  KL  GV +LAD V VT+GP+GRNV+++  +GAP I  DGV+VAKE+EL D + N+GA+LV++ A+KT D AGDGTTT+ VLA G+  EG++ + AGANP+ + RG++K + A++ ELK++SK+V D  E+A VA +SA ++  +G++IAEAM KVG+ GV+T+EE K   + L VVEGMQF
Sbjct:    2 ASKEINFSDS--ARNKLYEGVRQLADAVKVTMGPRGRNVLIQKSFGAPSITKDGVSVAKEIELADAISNMGAQLVKEVASKTADAAGDGTTTATVLAHGIFKEGLRNITAGANPIEVKRGMDKATAAIIDELKKLSKKVNDKKEIAQVATISANSDENIGSLIAEAMEKVGKDGVITVEEAKGINDELNVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_THELT (60 kDa chaperonin OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=groL PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.226e-52
Identity = 103/187 (55.08%), Postives = 143/187 (76.47%), Query Frame = 3
Query:  294 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            D  A + L+ GVNK+AD V +TLGPKGRNVV+E  +G+P I NDGV++AKE+ELED  EN+GA+LV++ A+KTND+AGDGTTT+ VLAQ +I EG+K VAAG+NP+L+ RGI+K ++     +K  +K++   E +A VAA+SA N+ E+G++IAEAM KVG  GV+T+E+ K+ E  +   EGMQF
Sbjct:    8 DEEARRSLEKGVNKVADAVRITLGPKGRNVVIEKSWGSPTITNDGVSIAKEIELEDKFENLGAQLVKEVASKTNDVAGDGTTTATVLAQSMIREGLKNVAAGSNPILLKRGIDKATEKAAKYIKDKAKKLSGREDIAHVAAISA-NSSEIGDLIAEAMDKVGEDGVITVEDSKTLETYVEFTEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_STRMK (60 kDa chaperonin OS=Stenotrophomonas maltophilia (strain K279a) GN=groL PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.226e-52
Identity = 107/196 (54.59%), Postives = 143/196 (72.96%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSK-EVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F +D  A  ++  GVN LA+ V  TLGPKGRNVVLE  +GAP I  DGV+VAKE+EL D  EN+GA++V++ A++TND AGDGTTT+ VLAQ LI EG K VAAG NP+ + RGI+K   A V+ELK +SK   +D  +A V  +SA ++  +G +IA+AM +VG++GV+T+EEG   +N L VV+GMQF
Sbjct:    2 AAKDIRFGED--ARSRMVRGVNVLANAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASRTNDDAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDKAVSAAVAELKNISKPTADDKAIAQVGTISANSDESIGQIIADAMKEVGKEGVITVEEGSGLDNELDVVKGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_SHESR (60 kDa chaperonin OS=Shewanella sp. (strain MR-7) GN=groL PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.226e-52
Identity = 108/196 (55.10%), Postives = 146/196 (74.49%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK++ F  D  A  K+  GVN LA+ V VTLGPKGRNVVL+  +G+P I  DGV+VAKE+ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A V ELK +S++  DS+ +A V  +SA ++  +G +IA AM KVG++GV+T+EEG++ EN L VVEGMQF
Sbjct:    2 AAKEVVFGND--ARVKMLAGVNILANAVKVTLGPKGRNVVLDKSFGSPLITKDGVSVAKEIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVTEGLKAVAAGMNPMDLKRGIDKAVAAAVIELKNLSQDCADSKAIAQVGTISANSDESIGEIIATAMEKVGKEGVITVEEGQALENELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_SHESM (60 kDa chaperonin OS=Shewanella sp. (strain MR-4) GN=groL PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.226e-52
Identity = 108/196 (55.10%), Postives = 146/196 (74.49%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK++ F  D  A  K+  GVN LA+ V VTLGPKGRNVVL+  +G+P I  DGV+VAKE+ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A V ELK +S++  DS+ +A V  +SA ++  +G +IA AM KVG++GV+T+EEG++ EN L VVEGMQF
Sbjct:    2 AAKEVVFGND--ARVKMLAGVNILANAVKVTLGPKGRNVVLDKSFGSPLITKDGVSVAKEIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVTEGLKAVAAGMNPMDLKRGIDKAVAAAVIELKNLSQDCADSKAIAQVGTISANSDESIGEIIATAMEKVGKEGVITVEEGQALENELDVVEGMQF 195          
The following BLAST results are available for this feature:
BLAST of CN185246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_SORC59.386e-5353.5760 kDa chaperonin 2 OS=Sorangium cellulosum (strai... [more]
CH601_VIBHA9.386e-5355.6160 kDa chaperonin 1 OS=Vibrio harveyi GN=groL1 PE=... [more]
CH601_RHOPA9.386e-5355.1060 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH601_AZOSB9.386e-5353.5760 kDa chaperonin 1 OS=Azoarcus sp. (strain BH72) ... [more]
CH60_XYLFM1.226e-5255.6160 kDa chaperonin OS=Xylella fastidiosa (strain M1... [more]
CH60_WOLSU1.226e-5251.5360 kDa chaperonin OS=Wolinella succinogenes GN=gro... [more]
CH60_THELT1.226e-5255.0860 kDa chaperonin OS=Thermotoga lettingae (strain ... [more]
CH60_STRMK1.226e-5254.5960 kDa chaperonin OS=Stenotrophomonas maltophilia ... [more]
CH60_SHESR1.226e-5255.1060 kDa chaperonin OS=Shewanella sp. (strain MR-7) ... [more]
CH60_SHESM1.226e-5255.1060 kDa chaperonin OS=Shewanella sp. (strain MR-4) ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185246 ID=CN185246; Name=CN185246; organism=Citrus sinensis; type=EST; length=851bp
CTCCTCTCTGCCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCG
CACTTTCTGCCGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCAC
TGCCATGTCTTCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTG
ATAAGAAGCTTGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATT
TCTTCAAGTTCATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCG
CACACCTAAGATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGAT
ATGCCATGAAGAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTT
GGAGTTACCCTTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTA
CGGTGCCCCAAAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTG
AGTTAGAGGACCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
GCTGCCAAGACTAATGACTTGGCTGGTGATGGAACAACAACATCTGTTGT
TCTTGCGCAAGGGCTTATAGCTGAAGGTGTTAAGGTCGTGGCAGCTGGTG
CAAATCCTGTTCTTATCACAAGAGGCATTGAGAAGACATCTAAGGCTCTT
GTTTCTGAGCTCAAGCAGATGTCAAAAGAGGTTGAAGATAGTGAACTTGC
CGATGTAGCAGCTGTTAGTGCAGGGAACAACTATGAAGTTGGGAATATGA
TTGCAGAAGCCATGAGTAAAGTGGGACGTAAGGGTGTGGTGACCCTTGAA
GAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAATT
T
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