CN185246

Overview
NameCN185246
Unique NameCN185246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_SHEPW (60 kDa chaperonin OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=groL PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.601e-52
Identity = 107/196 (54.59%), Postives = 147/196 (75.00%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            +AK++ F  D  A  K+  GVN LA+ V VTLGPKGRNVVL+  +GAP I  DGV+VAKE+ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A V+ELK +S+E  D++ +A V  +SA ++  +G +IA AM +VG++GV+T+EEG++ EN L VVEGMQF
Sbjct:    2 SAKEVLFGND--ARVKMLAGVNVLANAVKVTLGPKGRNVVLDKSFGAPLITKDGVSVAKEIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIVTEGLKAVAAGMNPMDLKRGIDKAVIAAVAELKNLSQECSDTKAIAQVGTISANSDETIGEIIATAMERVGKEGVITVEEGQALENELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_RHOCS (60 kDa chaperonin OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=groL PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.601e-52
Identity = 106/196 (54.08%), Postives = 141/196 (71.94%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEV-EDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK++ F  D  A  K+  GV+ LAD V VTLGPKGRNVV+E  +GAP+I  DGVTVAKE+EL D  EN+GA++V++ A KT DLAGDGTTT+ VLAQ ++ EG K +AAG NP+ + RG++   + +V ++K  S++V  + E+A V  +SA    E+G MIAEAM KVG +GV+T+EE K+ E  L VVEGMQF
Sbjct:    2 AAKEVKFGSDARA--KMLRGVDILADAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELSDKFENMGAQMVKEVAQKTADLAGDGTTTATVLAQAIVREGAKAIAAGMNPMDVKRGVDVAVQTVVDDIKSRSRKVTTNDEIAQVGTISANGEAEIGKMIAEAMQKVGNEGVITVEEAKALETELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_OCHA4 (60 kDa chaperonin OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=groL PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.601e-52
Identity = 107/196 (54.59%), Postives = 143/196 (72.96%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F +   A +K+  GV+ LAD V VTLGPKGRNVV++  +GAP+I  DGV+VAKE+ELED  EN+GA+++R+ A+KTND AGDGTTT+ VL Q ++ EG K VAAG NP+ + RGI+     +V+EL   +K++  S E+A V  +SA    E+G MIA+AM KVG +GV+T+EE K+AE  L VVEGMQF
Sbjct:    2 AAKDVKFGRS--AREKMLRGVDILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELEDKFENMGAQMLREVASKTNDTAGDGTTTATVLGQAIVQEGAKAVAAGMNPMDLKRGIDLAVTEVVAELLGKAKKINTSEEVAQVGTISANGEAEIGKMIADAMQKVGNEGVITVEEAKTAETELEVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_EUBE2 (60 kDa chaperonin OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=groL PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.601e-52
Identity = 107/195 (54.87%), Postives = 148/195 (75.90%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK++ +  +  A K L+ GVNKLA+ V VT+GPKGRNVVL+  YGAP I NDGVT+AK++ELED  EN+GA+LV++ AAKTND+AGDGTTT+ VLAQ +I EG+K +AAGANP+++ +G++K +   V  +  MS++V    ++A VAA+SAG+  EVG M+A+AM KV   GV+T+EE K+ +  L +VEGMQF
Sbjct:    2 AKEIKYGIE--ARKALEEGVNKLANTVRVTIGPKGRNVVLDKSYGAPLITNDGVTIAKDIELEDAFENMGAQLVKEVAAKTNDVAGDGTTTATVLAQAMINEGMKNLAAGANPIVLRKGMKKATDCAVEAIAGMSEKVTGKDQIAKVAAISAGDE-EVGQMVADAMEKVSNDGVITIEESKTMKTELDLVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_EDWI9 (60 kDa chaperonin OS=Edwardsiella ictaluri (strain 93-146) GN=groL PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.601e-52
Identity = 109/196 (55.61%), Postives = 142/196 (72.45%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +G+P I  DGV+VA+E+ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A V ELK +S    DS+ +A V  +SA  +  VG +IAEAM KVG++GV+T+EEG   ++ L VVEGMQF
Sbjct:    2 AAKDVKFGND--ARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGSPAITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVSAAVEELKALSVPCSDSKAIAQVGTISANADDTVGQLIAEAMEKVGKEGVITVEEGTGLQDELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_CLOPH (60 kDa chaperonin OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=groL PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.601e-52
Identity = 106/195 (54.36%), Postives = 146/195 (74.87%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AKD+ ++ D  A   ++ GVNKLA+ V VTLGPKGRNVVL+  +GAP I NDGVT+AKE+ELED  EN+GA+LV++ A KTND+AGDGTTT+ VLAQ +I EG+K +AAGANP+++ RG++K +   V  +  MS  +    ++A VAA+SAG++  VG M+A+AM KV + GV+T+EE K+ +  L +VEGMQF
Sbjct:    2 AKDIKYSAD--ARVAMEAGVNKLANTVRVTLGPKGRNVVLDKSFGAPLITNDGVTIAKEIELEDSFENMGAQLVKEVATKTNDVAGDGTTTATVLAQAMINEGMKNLAAGANPIILRRGMKKATDCAVEAISSMSSAINGKDQIAKVAAISAGDD-SVGEMVADAMDKVSKDGVITIEESKTMQTELDLVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_CHLPD (60 kDa chaperonin OS=Chlorobium phaeobacteroides (strain DSM 266) GN=groL PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.601e-52
Identity = 107/195 (54.87%), Postives = 145/195 (74.36%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AKD+ F+ D  A  KL+ GV+KLA+ V VTLGP GRNV+++ K+GAP    DGVTVAKE+EL D VEN+GA++VR+ A+KT+D+AGDGTTT+ VLAQ +  EG+K VAAGA P+ + RGI++  K +V EL+ +S+ +    E+A V  +SA N+ E+G +IAEAM KVG+ GV+T+EE K  +  L VVEGMQF
Sbjct:    3 AKDIIFDSDARA--KLKVGVDKLANAVKVTLGPAGRNVLIDKKFGAPTSTKDGVTVAKEIELADAVENMGAQMVREVASKTSDVAGDGTTTATVLAQAIYREGLKNVAAGARPIDLKRGIDRAVKEVVLELRNISRSISGKKEIAQVGTISANNDPEIGELIAEAMDKVGKDGVITVEEAKGMDTELKVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_BUCTT (60 kDa chaperonin OS=Buchnera aphidicola subsp. Tuberolachnus salignus GN=groL PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.601e-52
Identity = 108/196 (55.10%), Postives = 143/196 (72.96%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK++ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  EN+G ++V++ A+K ND AGDGTTT+ VLAQ +I EG+K VAAG NP+ + RGI+K   A V EL+++S    DS+ +A V  +SA ++  VG +IAEAM KVG++GV+T+EEG   ++ L VVEGMQF
Sbjct:    2 AAKEVKFGNDARA--KMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGTQMVKEVASKANDAAGDGTTTATVLAQSIITEGLKAVAAGMNPMDLKRGIDKAVIAAVEELRKLSVPCSDSKAIAQVGTISANSDLTVGKLIAEAMGKVGKEGVITVEEGTGLQDELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_BORPD (60 kDa chaperonin OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=groL PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.601e-52
Identity = 109/196 (55.61%), Postives = 145/196 (73.98%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK + F  D  A  ++  GVN LA+ V  TLGPKGRNVVLE  +GAP +  DGV+VAKE+EL+D  ENIGA+LV+  A+KT+D AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A V+EL + SK V  S E+A V ++SA ++  +G +IA+AM KVG++GV+T+E+GKS +N L VVEGMQF
Sbjct:    2 AAKQVLFGDD--ARVRIVRGVNVLANAVKTTLGPKGRNVVLERSFGAPTVTKDGVSVAKEIELKDKFENIGAQLVKDVASKTSDNAGDGTTTATVLAQAIVQEGLKYVAAGFNPIDLKRGIDKAVSAAVAELAKQSKPVTTSKEIAQVGSISANSDESIGKIIADAMDKVGKEGVITVEDGKSLDNELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH603_RHILO (60 kDa chaperonin 3 OS=Rhizobium loti GN=groL3 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.601e-52
Identity = 108/196 (55.10%), Postives = 143/196 (72.96%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIE-KTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F++D  A +++  GVN LAD V VTLGPKGRNVV++  +GAP+I  DGVTVAKE+ELED  EN+GA++VR+ A+KTND+AGDGTTT+ VLAQ ++ EG K VAAG NP+ + RGI+   S  + + +K  +K     E+A V  ++   +  VG MIAEAM KVG +GV+T+EE K+AE  L VVEGMQF
Sbjct:    2 AAKDVKFSRD--ARERMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDIAGDGTTTATVLAQSIVQEGHKAVAAGMNPMDLKRGIDLAVSDVVWTLIKNATKIKTSEEVAQVGTIAGNGDESVGKMIAEAMQKVGNEGVITVEEAKTAETELEVVEGMQF 195          
The following BLAST results are available for this feature:
BLAST of CN185246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_SHEPW1.601e-5254.5960 kDa chaperonin OS=Shewanella piezotolerans (str... [more]
CH60_RHOCS1.601e-5254.0860 kDa chaperonin OS=Rhodospirillum centenum (stra... [more]
CH60_OCHA41.601e-5254.5960 kDa chaperonin OS=Ochrobactrum anthropi (strain... [more]
CH60_EUBE21.601e-5254.8760 kDa chaperonin OS=Eubacterium eligens (strain A... [more]
CH60_EDWI91.601e-5255.6160 kDa chaperonin OS=Edwardsiella ictaluri (strain... [more]
CH60_CLOPH1.601e-5254.3660 kDa chaperonin OS=Clostridium phytofermentans (... [more]
CH60_CHLPD1.601e-5254.8760 kDa chaperonin OS=Chlorobium phaeobacteroides (... [more]
CH60_BUCTT1.601e-5255.1060 kDa chaperonin OS=Buchnera aphidicola subsp. Tu... [more]
CH60_BORPD1.601e-5255.6160 kDa chaperonin OS=Bordetella petrii (strain ATC... [more]
CH603_RHILO1.601e-5255.1060 kDa chaperonin 3 OS=Rhizobium loti GN=groL3 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185246 ID=CN185246; Name=CN185246; organism=Citrus sinensis; type=EST; length=851bp
CTCCTCTCTGCCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCG
CACTTTCTGCCGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCAC
TGCCATGTCTTCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTG
ATAAGAAGCTTGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATT
TCTTCAAGTTCATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCG
CACACCTAAGATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGAT
ATGCCATGAAGAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTT
GGAGTTACCCTTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTA
CGGTGCCCCAAAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTG
AGTTAGAGGACCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
GCTGCCAAGACTAATGACTTGGCTGGTGATGGAACAACAACATCTGTTGT
TCTTGCGCAAGGGCTTATAGCTGAAGGTGTTAAGGTCGTGGCAGCTGGTG
CAAATCCTGTTCTTATCACAAGAGGCATTGAGAAGACATCTAAGGCTCTT
GTTTCTGAGCTCAAGCAGATGTCAAAAGAGGTTGAAGATAGTGAACTTGC
CGATGTAGCAGCTGTTAGTGCAGGGAACAACTATGAAGTTGGGAATATGA
TTGCAGAAGCCATGAGTAAAGTGGGACGTAAGGGTGTGGTGACCCTTGAA
GAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAATT
T
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