CN185246

Overview
NameCN185246
Unique NameCN185246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH602_VIBCH (60 kDa chaperonin 2 OS=Vibrio cholerae GN=groL2 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.601e-52
Identity = 108/196 (55.10%), Postives = 146/196 (74.49%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK + F+ D  A +K+ +GVN LA+ V VTLGPKGR+VVL   YGAP I  DGV+VAKE+EL D  EN+GA++++Q A+K ND AGDGTTT+ VLAQ LI EG+K VAAG NP+ + RGI+K   A V +L Q++K   D++ +  V A+SA +++ +G +IA+AM KVGR GV+T+EEG++ +N L VVEGMQF
Sbjct:    2 AAKHVLFSTD--ARQKMLSGVNLLANAVKVTLGPKGRHVVLNKSYGAPTITKDGVSVAKEIELADKFENMGAQMLKQVASKANDEAGDGTTTATVLAQALINEGMKAVAAGMNPMDLKRGIDKAVSAAVEKLHQLAKPCSDTQSITQVGAISANSDHAIGEIIAQAMEKVGRNGVITVEEGQALQNELSVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH602_ROSDO (60 kDa chaperonin 2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=groL2 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.601e-52
Identity = 107/196 (54.59%), Postives = 143/196 (72.96%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F+ D  A  ++  GVN LAD V VTLGPKGRNVVL+  +GAP+I  DGV+VAKE+ELED  EN+GA++V++ A++TND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+  +  +V+ +K  ++EV DS E+A V  +SA    E+G  IA+AM KVG +GV+T+EE K  E    VVEGMQF
Sbjct:    2 AAKDVKFDTD--ARNRMLKGVNILADAVKVTLGPKGRNVVLDKSFGAPRITKDGVSVAKEIELEDKFENMGAQMVKEVASRTNDEAGDGTTTATVLAQAIVKEGLKSVAAGMNPMDLKRGIDLATVKVVAAIKDAAREVSDSAEVAQVGTISANGEAEIGQQIADAMQKVGNEGVITVEENKGLETETDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH601_VIBC3 (60 kDa chaperonin 1 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=groL1 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.601e-52
Identity = 108/196 (55.10%), Postives = 146/196 (74.49%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK + F+ D  A +K+ +GVN LA+ V VTLGPKGR+VVL   YGAP I  DGV+VAKE+EL D  EN+GA++++Q A+K ND AGDGTTT+ VLAQ LI EG+K VAAG NP+ + RGI+K   A V +L Q++K   D++ +  V A+SA +++ +G +IA+AM KVGR GV+T+EEG++ +N L VVEGMQF
Sbjct:    2 AAKHVLFSTD--ARQKMLSGVNLLANAVKVTLGPKGRHVVLNKSYGAPTITKDGVSVAKEIELADKFENMGAQMLKQVASKANDEAGDGTTTATVLAQALINEGMKAVAAGMNPMDLKRGIDKAVSAAVEKLHQLAKPCSDTQSITQVGAISANSDHAIGEIIAQAMEKVGRNGVITVEEGQALQNELSVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_XYLFT (60 kDa chaperonin OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=groL PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.091e-52
Identity = 108/196 (55.10%), Postives = 148/196 (75.51%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEV-EDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK++ F++   A  ++ +GVN LA+ V  TLGPKGR+VVL+  +G+P I  DGV+VAKE+EL D  EN+GA+++++ A+KTND AGDGTTT+ VLAQ LI EG K VAAG NP+ + RGI+K   A V+ELK++SK   +D  +A VA +SA ++  +GN+IAEAM KVG++GV+T+EEG + EN L VVEGMQF
Sbjct:    2 AAKEIIFSEK--ARSRMVHGVNLLANAVKATLGPKGRHVVLDKSFGSPIITKDGVSVAKEIELADKFENMGAQMLKEVASKTNDHAGDGTTTATVLAQALIREGCKAVAAGMNPMDLKRGIDKAVIAAVTELKKISKPTSDDKAIAQVATISANSDESIGNIIAEAMKKVGKEGVITIEEGTTLENELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_XYLFA (60 kDa chaperonin OS=Xylella fastidiosa GN=groL PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.091e-52
Identity = 108/196 (55.10%), Postives = 148/196 (75.51%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEV-EDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK++ F++   A  ++ +GVN LA+ V  TLGPKGR+VVL+  +G+P I  DGV+VAKE+EL D  EN+GA+++++ A+KTND AGDGTTT+ VLAQ LI EG K VAAG NP+ + RGI+K   A V+ELK++SK   +D  +A VA +SA ++  +GN+IAEAM KVG++GV+T+EEG + EN L VVEGMQF
Sbjct:    2 AAKEIIFSEK--ARSRMVHGVNLLANAVKATLGPKGRHVVLDKSFGSPIITKDGVSVAKEIELADKFENMGAQMLKEVASKTNDHAGDGTTTATVLAQALIREGCKAVAAGMNPMDLKRGIDKAVIAAVTELKKISKPTSDDKAIAQVATISANSDESIGNIIAEAMKKVGKEGVITIEEGTTLENELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_XYLF2 (60 kDa chaperonin OS=Xylella fastidiosa (strain M23) GN=groL PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.091e-52
Identity = 108/196 (55.10%), Postives = 148/196 (75.51%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEV-EDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK++ F++   A  ++ +GVN LA+ V  TLGPKGR+VVL+  +G+P I  DGV+VAKE+EL D  EN+GA+++++ A+KTND AGDGTTT+ VLAQ LI EG K VAAG NP+ + RGI+K   A V+ELK++SK   +D  +A VA +SA ++  +GN+IAEAM KVG++GV+T+EEG + EN L VVEGMQF
Sbjct:    2 AAKEIIFSEK--ARSRMVHGVNLLANAVKATLGPKGRHVVLDKSFGSPIITKDGVSVAKEIELADKFENMGAQMLKEVASKTNDHAGDGTTTATVLAQALIREGCKAVAAGMNPMDLKRGIDKAVIAAVTELKKISKPTSDDKAIAQVATISANSDESIGNIIAEAMKKVGKEGVITIEEGTTLENELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_TETHA (60 kDa chaperonin OS=Tetragenococcus halophilus GN=groL PE=3 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 2.091e-52
Identity = 108/195 (55.38%), Postives = 146/195 (74.87%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AKD+ F++D  A + + NGV+KLAD V VTLGP+GRNVVLE  YG+P I NDGVT+AKE+ELE+  EN+GA+LV + A+KTND+AGDGTTT+ VLAQ +++EG+K V +GANP+ I RGIE+ ++  V EL+ +S  VE  E +  V  VS+G+  +VG  IA+AM KVG  GV+T+E+ +  +  L VVEGMQF
Sbjct:    2 AKDIKFSED--ARRSMLNGVSKLADTVKVTLGPRGRNVVLEKSYGSPLITNDGVTIAKEIELENRFENMGAQLVSEVASKTNDIAGDGTTTATVLAQSIVSEGLKNVTSGANPLGIRRGIEQATQKAVEELQNISTPVESKEAIVQVGEVSSGSK-QVGQYIADAMDKVGNDGVITIEDSQGIDTELDVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_STRM5 (60 kDa chaperonin OS=Stenotrophomonas maltophilia (strain R551-3) GN=groL PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.091e-52
Identity = 107/196 (54.59%), Postives = 143/196 (72.96%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSK-EVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F +D  A  ++  GVN LA+ V  TLGPKGRNVVLE  +GAP I  DGV+VAKE+EL D  EN+GA++V++ A++TND AGDGTTT+ VLAQ LI EG K VAAG NP+ + RGI+K   A V+ELK +SK   +D  +A V  +SA ++  +G +IA+AM +VG++GV+T+EEG   +N L VV+GMQF
Sbjct:    2 AAKDIRFGED--ARSRMVRGVNVLANAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASRTNDDAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDKAVVAAVNELKSISKPTADDKAIAQVGTISANSDESIGQIIADAMKEVGKEGVITVEEGSGLDNELDVVKGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_SHEB8 (60 kDa chaperonin OS=Shewanella baltica (strain OS185) GN=groL PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.091e-52
Identity = 108/196 (55.10%), Postives = 147/196 (75.00%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK++ F  D  A  ++  GVN LA+ V VTLGPKGRNVVL+  +G+P I  DGV+VAKE+ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A V+ELK +S+   DS+ +A VA +SA ++  +G +IA AM KVG++GV+T+EEG++ EN L VVEGMQF
Sbjct:    2 AAKEVVFGND--ARVRMLAGVNILANAVKVTLGPKGRNVVLDKSFGSPLITKDGVSVAKEIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVVEGLKAVAAGMNPMDLKRGIDKAVIAAVAELKALSQPCADSKAIAQVATISANSDESIGEIIATAMEKVGKEGVITVEEGQALENELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_SHEB5 (60 kDa chaperonin OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=groL PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.091e-52
Identity = 108/196 (55.10%), Postives = 147/196 (75.00%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK++ F  D  A  ++  GVN LA+ V VTLGPKGRNVVL+  +G+P I  DGV+VAKE+ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A V+ELK +S+   DS+ +A VA +SA ++  +G +IA AM KVG++GV+T+EEG++ EN L VVEGMQF
Sbjct:    2 AAKEVVFGND--ARVRMLAGVNILANAVKVTLGPKGRNVVLDKSFGSPLITKDGVSVAKEIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVVEGLKAVAAGMNPMDLKRGIDKAVIAAVAELKALSQPCADSKAIAQVATISANSDESIGEIIATAMEKVGKEGVITVEEGQALENELDVVEGMQF 195          
The following BLAST results are available for this feature:
BLAST of CN185246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_VIBCH1.601e-5255.1060 kDa chaperonin 2 OS=Vibrio cholerae GN=groL2 PE... [more]
CH602_ROSDO1.601e-5254.5960 kDa chaperonin 2 OS=Roseobacter denitrificans (... [more]
CH601_VIBC31.601e-5255.1060 kDa chaperonin 1 OS=Vibrio cholerae serotype O1... [more]
CH60_XYLFT2.091e-5255.1060 kDa chaperonin OS=Xylella fastidiosa (strain Te... [more]
CH60_XYLFA2.091e-5255.1060 kDa chaperonin OS=Xylella fastidiosa GN=groL PE... [more]
CH60_XYLF22.091e-5255.1060 kDa chaperonin OS=Xylella fastidiosa (strain M2... [more]
CH60_TETHA2.091e-5255.3860 kDa chaperonin OS=Tetragenococcus halophilus GN... [more]
CH60_STRM52.091e-5254.5960 kDa chaperonin OS=Stenotrophomonas maltophilia ... [more]
CH60_SHEB82.091e-5255.1060 kDa chaperonin OS=Shewanella baltica (strain OS... [more]
CH60_SHEB52.091e-5255.1060 kDa chaperonin OS=Shewanella baltica (strain OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185246 ID=CN185246; Name=CN185246; organism=Citrus sinensis; type=EST; length=851bp
CTCCTCTCTGCCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCG
CACTTTCTGCCGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCAC
TGCCATGTCTTCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTG
ATAAGAAGCTTGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATT
TCTTCAAGTTCATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCG
CACACCTAAGATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGAT
ATGCCATGAAGAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTT
GGAGTTACCCTTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTA
CGGTGCCCCAAAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTG
AGTTAGAGGACCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
GCTGCCAAGACTAATGACTTGGCTGGTGATGGAACAACAACATCTGTTGT
TCTTGCGCAAGGGCTTATAGCTGAAGGTGTTAAGGTCGTGGCAGCTGGTG
CAAATCCTGTTCTTATCACAAGAGGCATTGAGAAGACATCTAAGGCTCTT
GTTTCTGAGCTCAAGCAGATGTCAAAAGAGGTTGAAGATAGTGAACTTGC
CGATGTAGCAGCTGTTAGTGCAGGGAACAACTATGAAGTTGGGAATATGA
TTGCAGAAGCCATGAGTAAAGTGGGACGTAAGGGTGTGGTGACCCTTGAA
GAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAATT
T
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