CN185246

Overview
NameCN185246
Unique NameCN185246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2470 contig Csv1_Contig2470:1..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH601_NITWN (60 kDa chaperonin 1 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=groL1 PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.446e-55
Identity = 110/196 (56.12%), Postives = 149/196 (76.02%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEV-EDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK++ F+ D  A +K+  GV+ LA+ V VTLGPKGRNVV+E  +GAP+I  DGVTVAKE+EL+D  EN+GA++VR+ A+KTNDLAGDGTTT+ VLAQ ++ EG K VAAG NP+ + RGI+   +A+V +L + +K++  +SE+A VA +SA  + E+G  +AEAM KVG +GV+T+EE KS E  L VVEGMQF
Sbjct:    2 AAKEVRFSSD--AREKMLRGVDTLANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELDDKFENMGAQMVREVASKTNDLAGDGTTTATVLAQAIVKEGAKAVAAGMNPMDLKRGIDLAVEAVVKDLTKNAKKITSNSEIAQVATISANGDTEIGRFLAEAMQKVGNEGVITVEEAKSLETELEVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_XANOR (60 kDa chaperonin OS=Xanthomonas oryzae pv. oryzae GN=groL PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.501e-55
Identity = 113/196 (57.65%), Postives = 144/196 (73.47%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSK-EVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F +D  A  ++  GVN LA+ V  TLGPKGRNVVLE  +GAP I  DGV+VAKE+EL D  EN+GA++V++ A+KTND AGDGTTT+ VLAQ LI EG K VAAG NP+ + RGI++  KA V ELK +SK   +D  +A V  +SA ++  +GN+IAEAM KVG++GV+T+EEG   EN L VVEGMQF
Sbjct:    2 AAKDIRFGED--ARTRMVRGVNVLANAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASKTNDNAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDQAVKAAVVELKNISKPTTDDKAIAQVGTISANSDESIGNIIAEAMKKVGKEGVITVEEGSGLENELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_XANOP (60 kDa chaperonin OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=groL PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.501e-55
Identity = 113/196 (57.65%), Postives = 144/196 (73.47%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSK-EVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F +D  A  ++  GVN LA+ V  TLGPKGRNVVLE  +GAP I  DGV+VAKE+EL D  EN+GA++V++ A+KTND AGDGTTT+ VLAQ LI EG K VAAG NP+ + RGI++  KA V ELK +SK   +D  +A V  +SA ++  +GN+IAEAM KVG++GV+T+EEG   EN L VVEGMQF
Sbjct:    2 AAKDIRFGED--ARTRMVRGVNVLANAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASKTNDNAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDQAVKAAVVELKNISKPTTDDKAIAQVGTISANSDESIGNIIAEAMKKVGKEGVITVEEGSGLENELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_XANOM (60 kDa chaperonin OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=groL PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.501e-55
Identity = 113/196 (57.65%), Postives = 144/196 (73.47%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSK-EVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F +D  A  ++  GVN LA+ V  TLGPKGRNVVLE  +GAP I  DGV+VAKE+EL D  EN+GA++V++ A+KTND AGDGTTT+ VLAQ LI EG K VAAG NP+ + RGI++  KA V ELK +SK   +D  +A V  +SA ++  +GN+IAEAM KVG++GV+T+EEG   EN L VVEGMQF
Sbjct:    2 AAKDIRFGED--ARTRMVRGVNVLANAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASKTNDNAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDQAVKAAVVELKNISKPTTDDKAIAQVGTISANSDESIGNIIAEAMKKVGKEGVITVEEGSGLENELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_XANCP (60 kDa chaperonin OS=Xanthomonas campestris pv. campestris GN=groL PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.501e-55
Identity = 113/196 (57.65%), Postives = 144/196 (73.47%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSK-EVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F +D  A  ++  GVN LA+ V  TLGPKGRNVVLE  +GAP I  DGV+VAKE+EL D  EN+GA++V++ A+KTND AGDGTTT+ VLAQ LI EG K VAAG NP+ + RGI++  KA V ELK +SK   +D  +A V  +SA ++  +GN+IAEAM KVG++GV+T+EEG   EN L VVEGMQF
Sbjct:    2 AAKDIRFGED--ARTRMVRGVNVLANAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASKTNDNAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDQAVKAAVIELKNISKPTTDDKAIAQVGTISANSDESIGNIIAEAMQKVGKEGVITVEEGSGLENELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_XANCH (60 kDa chaperonin OS=Xanthomonas campestris pv. phaseoli GN=groL PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.501e-55
Identity = 113/196 (57.65%), Postives = 144/196 (73.47%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSK-EVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F +D  A  ++  GVN LA+ V  TLGPKGRNVVLE  +GAP I  DGV+VAKE+EL D  EN+GA++V++ A+KTND AGDGTTT+ VLAQ LI EG K VAAG NP+ + RGI++  KA V ELK +SK   +D  +A V  +SA ++  +GN+IAEAM KVG++GV+T+EEG   EN L VVEGMQF
Sbjct:    2 AAKDIRFGED--ARTRMVRGVNVLANAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASKTNDNAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDQAVKAAVVELKNISKPTTDDKAIAQVGTISANSDESIGNIIAEAMQKVGKEGVITVEEGSGLENELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_XANC8 (60 kDa chaperonin OS=Xanthomonas campestris pv. campestris (strain 8004) GN=groL PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.501e-55
Identity = 113/196 (57.65%), Postives = 144/196 (73.47%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSK-EVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F +D  A  ++  GVN LA+ V  TLGPKGRNVVLE  +GAP I  DGV+VAKE+EL D  EN+GA++V++ A+KTND AGDGTTT+ VLAQ LI EG K VAAG NP+ + RGI++  KA V ELK +SK   +D  +A V  +SA ++  +GN+IAEAM KVG++GV+T+EEG   EN L VVEGMQF
Sbjct:    2 AAKDIRFGED--ARTRMVRGVNVLANAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASKTNDNAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDQAVKAAVIELKNISKPTTDDKAIAQVGTISANSDESIGNIIAEAMQKVGKEGVITVEEGSGLENELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_XANC5 (60 kDa chaperonin OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=groL PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.501e-55
Identity = 113/196 (57.65%), Postives = 144/196 (73.47%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSK-EVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F +D  A  ++  GVN LA+ V  TLGPKGRNVVLE  +GAP I  DGV+VAKE+EL D  EN+GA++V++ A+KTND AGDGTTT+ VLAQ LI EG K VAAG NP+ + RGI++  KA V ELK +SK   +D  +A V  +SA ++  +GN+IAEAM KVG++GV+T+EEG   EN L VVEGMQF
Sbjct:    2 AAKDIRFGED--ARTRMVRGVNVLANAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASKTNDNAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDQAVKAAVVELKNISKPTTDDKAIAQVGTISANSDESIGNIIAEAMKKVGKEGVITVEEGSGLENELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_XANAC (60 kDa chaperonin OS=Xanthomonas axonopodis pv. citri GN=groL PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.501e-55
Identity = 113/196 (57.65%), Postives = 144/196 (73.47%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSK-EVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F +D  A  ++  GVN LA+ V  TLGPKGRNVVLE  +GAP I  DGV+VAKE+EL D  EN+GA++V++ A+KTND AGDGTTT+ VLAQ LI EG K VAAG NP+ + RGI++  KA V ELK +SK   +D  +A V  +SA ++  +GN+IAEAM KVG++GV+T+EEG   EN L VVEGMQF
Sbjct:    2 AAKDIRFGED--ARTRMVRGVNVLANAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASKTNDNAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDQAVKAAVVELKNISKPTTDDKAIAQVGTISANSDESIGNIIAEAMKKVGKEGVITVEEGSGLENELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_GUITH (60 kDa chaperonin, chloroplastic OS=Guillardia theta GN=groL PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.501e-55
Identity = 106/184 (57.61%), Postives = 146/184 (79.35%), Query Frame = 3
Query:  303 AMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            A + L+ G++ LA+ V VTLGPKGRNVVLE KYGAP+IVNDGVT+AKE+ELED +EN G  L+RQAA+KTND+AGDGTTT+ VLA  ++ +G+K VAAGAN + + RGIEK ++ +V+++ + ++ VED+  ++ VA++SAGN+ E G MIA+A+ KVGR+GV++LEEGKS    L + EGM F
Sbjct:   11 ARRALERGMDILAEAVSVTLGPKGRNVVLERKYGAPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDVAGDGTTTATVLAHAMVKQGMKNVAAGANAIALKRGIEKATQFIVTQIAEYARPVEDTRAISQVASISAGNDIETGKMIADAIDKVGREGVISLEEGKSTITELEMTEGMCF 194          
The following BLAST results are available for this feature:
BLAST of CN185246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_NITWN3.446e-5556.1260 kDa chaperonin 1 OS=Nitrobacter winogradskyi (s... [more]
CH60_XANOR4.501e-5557.6560 kDa chaperonin OS=Xanthomonas oryzae pv. oryzae... [more]
CH60_XANOP4.501e-5557.6560 kDa chaperonin OS=Xanthomonas oryzae pv. oryzae... [more]
CH60_XANOM4.501e-5557.6560 kDa chaperonin OS=Xanthomonas oryzae pv. oryzae... [more]
CH60_XANCP4.501e-5557.6560 kDa chaperonin OS=Xanthomonas campestris pv. ca... [more]
CH60_XANCH4.501e-5557.6560 kDa chaperonin OS=Xanthomonas campestris pv. ph... [more]
CH60_XANC84.501e-5557.6560 kDa chaperonin OS=Xanthomonas campestris pv. ca... [more]
CH60_XANC54.501e-5557.6560 kDa chaperonin OS=Xanthomonas campestris pv. ve... [more]
CH60_XANAC4.501e-5557.6560 kDa chaperonin OS=Xanthomonas axonopodis pv. ci... [more]
CH60_GUITH4.501e-5557.6160 kDa chaperonin, chloroplastic OS=Guillardia the... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185246 ID=CN185246; Name=CN185246; organism=Citrus sinensis; type=EST; length=851bp
CTCCTCTCTGCCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCG
CACTTTCTGCCGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCAC
TGCCATGTCTTCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTG
ATAAGAAGCTTGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATT
TCTTCAAGTTCATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCG
CACACCTAAGATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGAT
ATGCCATGAAGAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTT
GGAGTTACCCTTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTA
CGGTGCCCCAAAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTG
AGTTAGAGGACCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
GCTGCCAAGACTAATGACTTGGCTGGTGATGGAACAACAACATCTGTTGT
TCTTGCGCAAGGGCTTATAGCTGAAGGTGTTAAGGTCGTGGCAGCTGGTG
CAAATCCTGTTCTTATCACAAGAGGCATTGAGAAGACATCTAAGGCTCTT
GTTTCTGAGCTCAAGCAGATGTCAAAAGAGGTTGAAGATAGTGAACTTGC
CGATGTAGCAGCTGTTAGTGCAGGGAACAACTATGAAGTTGGGAATATGA
TTGCAGAAGCCATGAGTAAAGTGGGACGTAAGGGTGTGGTGACCCTTGAA
GAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAATT
T
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