DC887747

Overview
NameDC887747
Unique NameDC887747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A4_VOLCA (Histone H2A-IV OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.087e-38
Identity = 83/123 (67.48%), Postives = 92/123 (74.80%), Query Frame = -3 
Query:  177 GRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKM--GKGRE 539
            G+GK    K++SRS KAGLQFPVGRIAR+LK GKYA+R+GAGAP                 AGNAARDNKKNRIVPRHIQLA+RNDEEL KLLG VTIA+GGVLPNIH  LLP+K   GKG E
Sbjct:    5 GKGKTAGKKAVSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSKGGKGEE 127
[Close]
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A3_VOLCA (Histone H2A-III OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.032e-38
Identity = 83/123 (67.48%), Postives = 92/123 (74.80%), Query Frame = -3 
Query:  177 GRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKM--GKGRE 539
            G+GK    K++SRS KAGLQFPVGRIAR+LK GKYA+R+GAGAP                 AGNAARDNKKNRIVPRHIQLA+RNDEEL KLLG VTIA+GGVLPNIH  LLP+K   GKG E
Sbjct:    5 GKGKTAGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSKGGKGEE 127
[Close]
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A3_ARATH (Probable histone H2A.3 OS=Arabidopsis thaliana GN=At4g27230 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.032e-38
Identity = 86/124 (69.35%), Postives = 91/124 (73.39%), Query Frame = -3 
Query:  180 GRGKPKST----KSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGR 539
            GRGK   +    KS SRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP                 AGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLP+K G  +
Sbjct:    3 GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGSSK 126
[Close]
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A2_ORYSJ (Probable histone H2A.2 OS=Oryza sativa subsp. japonica GN=Os07g0545400 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.532e-37
Identity = 84/121 (69.42%), Postives = 92/121 (76.03%), Query Frame = -3 
Query:  189 GRGKP----KSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMG 539
            GRGK      + K++SRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP                 AGNAARDNKK RIVPRHIQLAVRNDEELS+LLGTVTIA+GGV+PNIH  LLP+K G
Sbjct:    3 GRGKAIGSGAAKKAMSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPKKAG 123
[Close]
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A2_ORYSI (Probable histone H2A.2 OS=Oryza sativa subsp. indica GN=OsI_025469 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.532e-37
Identity = 84/121 (69.42%), Postives = 92/121 (76.03%), Query Frame = -3 
Query:  189 GRGKP----KSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMG 539
            GRGK      + K++SRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP                 AGNAARDNKK RIVPRHIQLAVRNDEELS+LLGTVTIA+GGV+PNIH  LLP+K G
Sbjct:    3 GRGKAIGSGAAKKAMSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPKKAG 123
[Close]
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A7_ORYSJ (Probable histone H2A.7 OS=Oryza sativa subsp. japonica GN=Os12g0438000 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.614e-37
Identity = 83/124 (66.94%), Postives = 92/124 (74.19%), Query Frame = -3 
Query:  180 GRGKP----KSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGR 539
            GRGK      + K+ SRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP                 AGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG  TIA+GGV+PNIHQ+LLP+K G  +
Sbjct:    3 GRGKAIGAGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSK 126
[Close]
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A7_ORYSI (Probable histone H2A.7 OS=Oryza sativa subsp. indica GN=OsI_036922 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.614e-37
Identity = 83/124 (66.94%), Postives = 92/124 (74.19%), Query Frame = -3 
Query:  180 GRGKP----KSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGR 539
            GRGK      + K+ SRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP                 AGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG  TIA+GGV+PNIHQ+LLP+K G  +
Sbjct:    3 GRGKAIGAGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSK 126
[Close]
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A3_ORYSJ (Probable histone H2A.3 OS=Oryza sativa subsp. japonica GN=Os08g0427700 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.614e-37
Identity = 84/121 (69.42%), Postives = 90/121 (74.38%), Query Frame = -3 
Query:  189 GRGKP----KSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMG 539
            GRGK      + K+ SRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP                 AGNAARDNKK RIVPRHIQLAVRNDEELS+LLG VTIANGGV+PNIH  LLP+K G
Sbjct:    3 GRGKAIGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPKKAG 123
[Close]
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A3_ORYSI (Probable histone H2A.3 OS=Oryza sativa subsp. indica GN=OsI_028288 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.614e-37
Identity = 84/121 (69.42%), Postives = 90/121 (74.38%), Query Frame = -3 
Query:  189 GRGKP----KSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMG 539
            GRGK      + K+ SRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP                 AGNAARDNKK RIVPRHIQLAVRNDEELS+LLG VTIANGGV+PNIH  LLP+K G
Sbjct:    3 GRGKAIGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPKKAG 123
[Close]
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A1_ORYSJ (Probable histone H2A.1 OS=Oryza sativa subsp. japonica GN=Os07g0545300 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.614e-37
Identity = 83/124 (66.94%), Postives = 92/124 (74.19%), Query Frame = -3 
Query:  180 GRGKP----KSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGR 539
            GRGK      + K+ SRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP                 AGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG  TIA+GGV+PNIHQ+LLP+K G  +
Sbjct:    3 GRGKAIGAGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSK 126
The following BLAST results are available for this feature:
BLAST of DC887747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A4_VOLCA3.087e-3867.48Histone H2A-IV OS=Volvox carteri PE=3 SV=1[more]
H2A3_VOLCA4.032e-3867.48Histone H2A-III OS=Volvox carteri PE=3 SV=1[more]
H2A3_ARATH4.032e-3869.35Probable histone H2A.3 OS=Arabidopsis thaliana GN=... [more]
H2A2_ORYSJ1.532e-3769.42Probable histone H2A.2 OS=Oryza sativa subsp. japo... [more]
H2A2_ORYSI1.532e-3769.42Probable histone H2A.2 OS=Oryza sativa subsp. indi... [more]
H2A7_ORYSJ2.614e-3766.94Probable histone H2A.7 OS=Oryza sativa subsp. japo... [more]
H2A7_ORYSI2.614e-3766.94Probable histone H2A.7 OS=Oryza sativa subsp. indi... [more]
H2A3_ORYSJ2.614e-3769.42Probable histone H2A.3 OS=Oryza sativa subsp. japo... [more]
H2A3_ORYSI2.614e-3769.42Probable histone H2A.3 OS=Oryza sativa subsp. indi... [more]
H2A1_ORYSJ2.614e-3766.94Probable histone H2A.1 OS=Oryza sativa subsp. japo... [more]

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Properties
Property NameValue
Genbank descriptionDC887747 EIC Citrus sinensis cDNA clone EIC0823 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887747 ID=DC887747; Name=DC887747; organism=Citrus sinensis; type=EST; length=565bp
TTTTGTTTCCTATATTCGGCCGGANCCCAAATCCCAGTTTACACGGAGAT
AAAAGGATCACAAATAAAGAAAAAAATTGCGTAAATCAATCAATCCTGCA
TTTTTTTTTTAAGTATTCAAATTCAACAAGCAGAGAAGTTTCAGCACTAA
AATTCTTGCGAAGCAGATCCAATATCCTCCCTTCCTTTGCCCATTTTCCT
TGGCAACAGGTTCTGATGAATGTTTGGCAGAACTCCTCCATTTGCAATAG
TAACTGTGCCCAAAAGCTTGCTTAATTCTTCATCATTCCTCACAGCTAGT
TGAATGTGCCTTGGAACGATACGGTTCTTTTTGTTATCCCTTGCAGCATT
TCCAGCAAGCTCCAAAACCTCAGCAGCAAGGTATTCAAGAACAGCCGATA
GGTAGACGGGGGCGCCGGCACCCACGCGATCGGCGTACTTTCCGGCTTTG
AGGAAGCGAGCAATACGGCCGACGGGGAACTGAAGGCCAGCCTTGTGAGA
TCTGGAAATTGATTTGGTCGACTTGGGCTTGCCTCTGCCGCCCTTCGTTG
ATCCTGCGGAGCTCA
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