DC887747

Overview
NameDC887747
Unique NameDC887747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC887747_ssr84 microsatellite DC887747_ssr84:84..95. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3592 contig Csv1_Contig3592:85..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_ASPNG (Histone H2A OS=Aspergillus niger GN=httA PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.342e-33
Identity = 77/130 (59.23%), Postives = 87/130 (66.92%), Query Frame = -3
Query:  165 GSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGS 554
            G   GG+    S  + SRS KAGL FPVGR+ R L+ G YA RVGAGAP                 AGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQNLLP+K  K  +  GS
Sbjct:    3 GGKSGGKASG-SKNAQSRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKGPGS 131          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_ASPNC (Histone H2A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=httA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.342e-33
Identity = 77/130 (59.23%), Postives = 87/130 (66.92%), Query Frame = -3
Query:  165 GSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGS 554
            G   GG+    S  + SRS KAGL FPVGR+ R L+ G YA RVGAGAP                 AGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQNLLP+K  K  +  GS
Sbjct:    3 GGKSGGKASG-SKNAQSRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKGPGS 131          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2AX_TETTH (Histone H2A.X OS=Tetrahymena thermophila GN=HTA1 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.342e-33
Identity = 77/137 (56.20%), Postives = 93/137 (67.88%), Query Frame = -3
Query:  153 SSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 563
            S+ G     +GK  S+K +SRS +AGLQFPVGRI+RFLK G+Y++RVG GAP                 AGNAA+DNKK RIVPRHI LA+RNDEEL+KL+   TIA+GGVLPNI+  LLP K  K  E  G ASQ+
Sbjct:    2 STTGKGGKAKGKTASSKQVSRSARAGLQFPVGRISRFLKHGRYSERVGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSK-SKKTESRGQASQD 137          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A2_PSAMI (Late histone H2A.2.1 OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.342e-33
Identity = 74/118 (62.71%), Postives = 85/118 (72.03%), Query Frame = -3
Query:  186 GRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 539
            G+G    +K+ SRS +AGLQFPVGR+ RFLK G Y +RVGAGAP                 AGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLP+K GK
Sbjct:    5 GKGAKAKSKAKSRSSRAGLQFPVGRVHRFLKKGNYGNRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQTVLLPKKTGK 122          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2AX_TETPY (Histone H2A.X OS=Tetrahymena pyriformis GN=HTA1 PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.753e-33
Identity = 76/137 (55.47%), Postives = 93/137 (67.88%), Query Frame = -3
Query:  153 SSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 563
            S+ G     +GK  S+K +SRS +AGLQFPVGRI+RFLK G+Y++R+G GAP                 AGNAA+DNKK RIVPRHI LA+RNDEEL+KL+   TIA+GGVLPNI+  LLP K  K  E  G ASQ+
Sbjct:    2 STTGKGGKAKGKTASSKQVSRSARAGLQFPVGRISRFLKHGRYSERIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSK-SKKTESRGQASQD 137          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A2_CANGA (Histone H2A.2 OS=Candida glabrata GN=HTA2 PE=3 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 1.753e-33
Identity = 76/131 (58.02%), Postives = 90/131 (68.70%), Query Frame = -3
Query:  153 KGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 545
            KGG+    +  S +RS KAGL FPVGR+ R L+ G YA R+G+GAP                 AGNAARDNKK+RI+PRH+QLA+RND+EL+KLLG VTIA GGVLPNIHQNLLP+K  K      SASQE
Sbjct:    5 KGGKVGSAAKASQTRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAK-----PSASQE 130          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A2_ASHGO (Histone H2A.2 OS=Ashbya gossypii GN=HTA2 PE=3 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 1.753e-33
Identity = 76/133 (57.14%), Postives = 89/133 (66.92%), Query Frame = -3
Query:  153 STKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 551
            S KGG+    +  S SRS KAGL FPVGR+ R L+ G YA R+G+GAP                 AGNAARDNKK RI+PRH+QLA+RND+EL+KLLG VTIA GGVLPNIH NLLP+K  K  +    ASQE
Sbjct:    2 SGKGGKAGSAAKASQSRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHANLLPKKSAKATK----ASQE 130          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A1_PICGU (Histone H2A.1 OS=Pichia guilliermondii GN=HTA1 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.753e-33
Identity = 80/132 (60.61%), Postives = 92/132 (69.70%), Query Frame = -3
Query:  153 GGRGKPKSTK--SISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 542
            GG+GK  S++  S SRS KAGL FPVGRI R L+ G YA RVG+GAP                 AGNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ+LLP K     + I  ASQE
Sbjct:    3 GGKGKVGSSEKASTSRSAKAGLTFPVGRIHRLLRKGNYAQRVGSGAPVYLTSVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQSLLPSK-----KSIKGASQE 129          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A1_ASHGO (Histone H2A.1 OS=Ashbya gossypii GN=HTA1 PE=3 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 1.753e-33
Identity = 76/133 (57.14%), Postives = 89/133 (66.92%), Query Frame = -3
Query:  153 STKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 551
            S KGG+    +  S SRS KAGL FPVGR+ R L+ G YA R+G+GAP                 AGNAARDNKK RI+PRH+QLA+RND+EL+KLLG VTIA GGVLPNIH NLLP+K  K  +    ASQE
Sbjct:    2 SGKGGKAGSAAKASQSRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGAPVYMTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHANLLPKKSAKATK----ASQE 130          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_ACRFO (Histone H2A OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 2.290e-33
Identity = 75/118 (63.56%), Postives = 85/118 (72.03%), Query Frame = -3
Query:  186 GRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 539
            G+GK + TKS SRS +AGLQFPVGRI R L+ G YA+RVGAGAP                 AGNAARDNKK+RI+PRH+QLAVRNDEEL+KLL  VTIA GGVLPNI   LLP+K  K
Sbjct:    5 GKGKAQGTKSKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKTEK 122          
The following BLAST results are available for this feature:
BLAST of DC887747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A_ASPNG1.342e-3359.23Histone H2A OS=Aspergillus niger GN=httA PE=2 SV=1[more]
H2A_ASPNC1.342e-3359.23Histone H2A OS=Aspergillus niger (strain CBS 513.8... [more]
H2AX_TETTH1.342e-3356.20Histone H2A.X OS=Tetrahymena thermophila GN=HTA1 P... [more]
H2A2_PSAMI1.342e-3362.71Late histone H2A.2.1 OS=Psammechinus miliaris PE=2... [more]
H2AX_TETPY1.753e-3355.47Histone H2A.X OS=Tetrahymena pyriformis GN=HTA1 PE... [more]
H2A2_CANGA1.753e-3358.02Histone H2A.2 OS=Candida glabrata GN=HTA2 PE=3 SV=... [more]
H2A2_ASHGO1.753e-3357.14Histone H2A.2 OS=Ashbya gossypii GN=HTA2 PE=3 SV=3[more]
H2A1_PICGU1.753e-3360.61Histone H2A.1 OS=Pichia guilliermondii GN=HTA1 PE=... [more]
H2A1_ASHGO1.753e-3357.14Histone H2A.1 OS=Ashbya gossypii GN=HTA1 PE=3 SV=3[more]
H2A_ACRFO2.290e-3363.56Histone H2A OS=Acropora formosa PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionDC887747 EIC Citrus sinensis cDNA clone EIC0823 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887747 ID=DC887747; Name=DC887747; organism=Citrus sinensis; type=EST; length=565bp
TTTTGTTTCCTATATTCGGCCGGANCCCAAATCCCAGTTTACACGGAGAT
AAAAGGATCACAAATAAAGAAAAAAATTGCGTAAATCAATCAATCCTGCA
TTTTTTTTTTAAGTATTCAAATTCAACAAGCAGAGAAGTTTCAGCACTAA
AATTCTTGCGAAGCAGATCCAATATCCTCCCTTCCTTTGCCCATTTTCCT
TGGCAACAGGTTCTGATGAATGTTTGGCAGAACTCCTCCATTTGCAATAG
TAACTGTGCCCAAAAGCTTGCTTAATTCTTCATCATTCCTCACAGCTAGT
TGAATGTGCCTTGGAACGATACGGTTCTTTTTGTTATCCCTTGCAGCATT
TCCAGCAAGCTCCAAAACCTCAGCAGCAAGGTATTCAAGAACAGCCGATA
GGTAGACGGGGGCGCCGGCACCCACGCGATCGGCGTACTTTCCGGCTTTG
AGGAAGCGAGCAATACGGCCGACGGGGAACTGAAGGCCAGCCTTGTGAGA
TCTGGAAATTGATTTGGTCGACTTGGGCTTGCCTCTGCCGCCCTTCGTTG
ATCCTGCGGAGCTCA
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