DC887747
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_ASPNG (Histone H2A OS=Aspergillus niger GN=httA PE=2 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.342e-33 Identity = 77/130 (59.23%), Postives = 87/130 (66.92%), Query Frame = -3 Query: 165 GSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGS 554 G GG+ S + SRS KAGL FPVGR+ R L+ G YA RVGAGAP AGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQNLLP+K K + GS Sbjct: 3 GGKSGGKASG-SKNAQSRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKGPGS 131
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_ASPNC (Histone H2A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=httA PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.342e-33 Identity = 77/130 (59.23%), Postives = 87/130 (66.92%), Query Frame = -3 Query: 165 GSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGS 554 G GG+ S + SRS KAGL FPVGR+ R L+ G YA RVGAGAP AGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQNLLP+K K + GS Sbjct: 3 GGKSGGKASG-SKNAQSRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKGPGS 131
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2AX_TETTH (Histone H2A.X OS=Tetrahymena thermophila GN=HTA1 PE=1 SV=2) HSP 1 Score: 142.51 bits (358), Expect = 1.342e-33 Identity = 77/137 (56.20%), Postives = 93/137 (67.88%), Query Frame = -3 Query: 153 SSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 563 S+ G +GK S+K +SRS +AGLQFPVGRI+RFLK G+Y++RVG GAP AGNAA+DNKK RIVPRHI LA+RNDEEL+KL+ TIA+GGVLPNI+ LLP K K E G ASQ+ Sbjct: 2 STTGKGGKAKGKTASSKQVSRSARAGLQFPVGRISRFLKHGRYSERVGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSK-SKKTESRGQASQD 137
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A2_PSAMI (Late histone H2A.2.1 OS=Psammechinus miliaris PE=2 SV=2) HSP 1 Score: 142.51 bits (358), Expect = 1.342e-33 Identity = 74/118 (62.71%), Postives = 85/118 (72.03%), Query Frame = -3 Query: 186 GRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 539 G+G +K+ SRS +AGLQFPVGR+ RFLK G Y +RVGAGAP AGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI LLP+K GK Sbjct: 5 GKGAKAKSKAKSRSSRAGLQFPVGRVHRFLKKGNYGNRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQTVLLPKKTGK 122
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2AX_TETPY (Histone H2A.X OS=Tetrahymena pyriformis GN=HTA1 PE=1 SV=2) HSP 1 Score: 142.124 bits (357), Expect = 1.753e-33 Identity = 76/137 (55.47%), Postives = 93/137 (67.88%), Query Frame = -3 Query: 153 SSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 563 S+ G +GK S+K +SRS +AGLQFPVGRI+RFLK G+Y++R+G GAP AGNAA+DNKK RIVPRHI LA+RNDEEL+KL+ TIA+GGVLPNI+ LLP K K E G ASQ+ Sbjct: 2 STTGKGGKAKGKTASSKQVSRSARAGLQFPVGRISRFLKHGRYSERIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSK-SKKTESRGQASQD 137
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A2_CANGA (Histone H2A.2 OS=Candida glabrata GN=HTA2 PE=3 SV=3) HSP 1 Score: 142.124 bits (357), Expect = 1.753e-33 Identity = 76/131 (58.02%), Postives = 90/131 (68.70%), Query Frame = -3 Query: 153 KGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 545 KGG+ + S +RS KAGL FPVGR+ R L+ G YA R+G+GAP AGNAARDNKK+RI+PRH+QLA+RND+EL+KLLG VTIA GGVLPNIHQNLLP+K K SASQE Sbjct: 5 KGGKVGSAAKASQTRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAK-----PSASQE 130
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A2_ASHGO (Histone H2A.2 OS=Ashbya gossypii GN=HTA2 PE=3 SV=3) HSP 1 Score: 142.124 bits (357), Expect = 1.753e-33 Identity = 76/133 (57.14%), Postives = 89/133 (66.92%), Query Frame = -3 Query: 153 STKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 551 S KGG+ + S SRS KAGL FPVGR+ R L+ G YA R+G+GAP AGNAARDNKK RI+PRH+QLA+RND+EL+KLLG VTIA GGVLPNIH NLLP+K K + ASQE Sbjct: 2 SGKGGKAGSAAKASQSRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHANLLPKKSAKATK----ASQE 130
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A1_PICGU (Histone H2A.1 OS=Pichia guilliermondii GN=HTA1 PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 1.753e-33 Identity = 80/132 (60.61%), Postives = 92/132 (69.70%), Query Frame = -3 Query: 153 GGRGKPKSTK--SISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 542 GG+GK S++ S SRS KAGL FPVGRI R L+ G YA RVG+GAP AGNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ+LLP K + I ASQE Sbjct: 3 GGKGKVGSSEKASTSRSAKAGLTFPVGRIHRLLRKGNYAQRVGSGAPVYLTSVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQSLLPSK-----KSIKGASQE 129
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A1_ASHGO (Histone H2A.1 OS=Ashbya gossypii GN=HTA1 PE=3 SV=3) HSP 1 Score: 142.124 bits (357), Expect = 1.753e-33 Identity = 76/133 (57.14%), Postives = 89/133 (66.92%), Query Frame = -3 Query: 153 STKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 551 S KGG+ + S SRS KAGL FPVGR+ R L+ G YA R+G+GAP AGNAARDNKK RI+PRH+QLA+RND+EL+KLLG VTIA GGVLPNIH NLLP+K K + ASQE Sbjct: 2 SGKGGKAGSAAKASQSRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGAPVYMTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHANLLPKKSAKATK----ASQE 130
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_ACRFO (Histone H2A OS=Acropora formosa PE=3 SV=2) HSP 1 Score: 141.739 bits (356), Expect = 2.290e-33 Identity = 75/118 (63.56%), Postives = 85/118 (72.03%), Query Frame = -3 Query: 186 GRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 539 G+GK + TKS SRS +AGLQFPVGRI R L+ G YA+RVGAGAP AGNAARDNKK+RI+PRH+QLAVRNDEEL+KLL VTIA GGVLPNI LLP+K K Sbjct: 5 GKGKAQGTKSKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKTEK 122 The following BLAST results are available for this feature:
BLAST of DC887747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 239
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887747 ID=DC887747; Name=DC887747; organism=Citrus sinensis; type=EST; length=565bpback to top |