DC887747

Overview
NameDC887747
Unique NameDC887747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A7_ARATH (Probable histone H2A.7 OS=Arabidopsis thaliana GN=At5g59870 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.532e-32
Identity = 78/128 (60.94%), Postives = 89/128 (69.53%), Query Frame = -3
Query:  195 SAGSTK---GGR---GKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRK 560
            S G  K   GGR   G PK TKS+S+S KAGLQFPVGRI RFLK G+YA R+G GAP                 AGNAARDNKK+RI+PRH+ LA+RNDEEL KLL  VTIA+GGVLPNI+  LLP+K
Sbjct:    3 STGKVKKAFGGRKPPGAPK-TKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVYMAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPKK 129          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_COCIM (Histone H2A OS=Coccidioides immitis GN=HTA1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.306e-32
Identity = 74/123 (60.16%), Postives = 83/123 (67.48%), Query Frame = -3
Query:  186 GSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 554
            G   GG+    S  S SRS KAGL FPVGR+ R L+ G YA RVGAGAP                 AGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGV+P IHQNLLP+K  K
Sbjct:    3 GGKSGGKASG-SKSSQSRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVMPYIHQNLLPKKTPK 124          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_SIPNU (Histone H2A OS=Sipunculus nudus PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 4.318e-32
Identity = 74/126 (58.73%), Postives = 86/126 (68.25%), Query Frame = -3
Query:  180 AGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGR 557
            +G  KGG+ K KS    SRS +AGLQFPVGRI R L+ G YA+R+GAGAP                 AGNAARDNKK RI+PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLP+K  K +
Sbjct:    2 SGRGKGGKAKGKSK---SRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQKSK 124          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSJ (Probable histone H2A.6 OS=Oryza sativa subsp. japonica GN=Os05g0113900 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 4.318e-32
Identity = 74/127 (58.27%), Postives = 87/127 (68.50%), Query Frame = -3
Query:  153 GKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 533
            G PK  K +SRS KAGLQFPVGRI R+LK G+YA RVG GAP                 AGNAARDNKKNRI+PRH+ LA+RNDEEL KLL  VTIA+GGVLPNI+  LLP+K  +  +    AS++
Sbjct:   19 GGPKK-KPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKADKPAKASKD 144          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSI (Probable histone H2A.6 OS=Oryza sativa subsp. indica GN=OsI_017523 PE=3 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 4.318e-32
Identity = 74/127 (58.27%), Postives = 87/127 (68.50%), Query Frame = -3
Query:  153 GKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 533
            G PK  K +SRS KAGLQFPVGRI R+LK G+YA RVG GAP                 AGNAARDNKKNRI+PRH+ LA+RNDEEL KLL  VTIA+GGVLPNI+  LLP+K  +  +    AS++
Sbjct:   19 GGPKK-KPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKADKPAKASKD 144          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A1_SOLLC (Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.318e-32
Identity = 75/127 (59.06%), Postives = 87/127 (68.50%), Query Frame = -3
Query:  177 AGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGRE 557
            AG  KGG  K    KS+++S KAGLQFPVGRI R+LK G+YA RVG+GAP                 AGNAARDNKK+RI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+  LLP+K     E
Sbjct:   10 AGGRKGGPRK----KSVTKSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPIYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDEELGKLLAGVTIASGGVLPNINPVLLPKKSAVAEE 132          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_STRPU (Histone H2A, embryonic OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 5.640e-32
Identity = 74/122 (60.66%), Postives = 86/122 (70.49%), Query Frame = -3
Query:  186 STKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 551
            S +G  GK + TK+ +RS +AGLQFPVGR+ RFL+ G YA RVG GAP                 AGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLP+K  K
Sbjct:    2 SGRGKSGKAR-TKAKTRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAK 122          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2AE_PSAMI (Histone H2A, embryonic OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 5.640e-32
Identity = 74/122 (60.66%), Postives = 86/122 (70.49%), Query Frame = -3
Query:  186 STKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 551
            S +G  GK + TK+ +RS +AGLQFPVGR+ RFL+ G YA RVG GAP                 AGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLP+K  K
Sbjct:    2 SGRGKSGKAR-TKAKTRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAK 122          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A2_MEDTR (Probable histone H2A.2 OS=Medicago truncatula GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.640e-32
Identity = 74/121 (61.16%), Postives = 85/121 (70.25%), Query Frame = -3
Query:  195 AGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRK 557
            AG  KGG  + KS   ++RS +AGLQFPVGRI R+LK G+YA RVG GAP                 AGNAARDNKKNRI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+  LLP+K
Sbjct:   11 AGGRKGGGPRKKS---VTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 128          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_PLADU (Histone H2A OS=Platynereis dumerilii PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 7.366e-32
Identity = 74/126 (58.73%), Postives = 86/126 (68.25%), Query Frame = -3
Query:  180 AGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGR 557
            +G  KGG+ K KS    +RS +AGLQFPVGRI R L+ G YA+RVGAGAP                 AGNAARDNKK RI+PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLP+K  K +
Sbjct:    2 SGRGKGGKAKGKSK---TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTTKAK 124          
The following BLAST results are available for this feature:
BLAST of DC887747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A7_ARATH2.532e-3260.94Probable histone H2A.7 OS=Arabidopsis thaliana GN=... [more]
H2A_COCIM3.306e-3260.16Histone H2A OS=Coccidioides immitis GN=HTA1 PE=3 S... [more]
H2A_SIPNU4.318e-3258.73Histone H2A OS=Sipunculus nudus PE=1 SV=2[more]
H2A6_ORYSJ4.318e-3258.27Probable histone H2A.6 OS=Oryza sativa subsp. japo... [more]
H2A6_ORYSI4.318e-3258.27Probable histone H2A.6 OS=Oryza sativa subsp. indi... [more]
H2A1_SOLLC4.318e-3259.06Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1[more]
H2A_STRPU5.640e-3260.66Histone H2A, embryonic OS=Strongylocentrotus purpu... [more]
H2AE_PSAMI5.640e-3260.66Histone H2A, embryonic OS=Psammechinus miliaris PE... [more]
H2A2_MEDTR5.640e-3261.16Probable histone H2A.2 OS=Medicago truncatula GN=M... [more]
H2A_PLADU7.366e-3258.73Histone H2A OS=Platynereis dumerilii PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionDC887747 EIC Citrus sinensis cDNA clone EIC0823 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887747 ID=DC887747; Name=DC887747; organism=Citrus sinensis; type=EST; length=565bp
TTTTGTTTCCTATATTCGGCCGGANCCCAAATCCCAGTTTACACGGAGAT
AAAAGGATCACAAATAAAGAAAAAAATTGCGTAAATCAATCAATCCTGCA
TTTTTTTTTTAAGTATTCAAATTCAACAAGCAGAGAAGTTTCAGCACTAA
AATTCTTGCGAAGCAGATCCAATATCCTCCCTTCCTTTGCCCATTTTCCT
TGGCAACAGGTTCTGATGAATGTTTGGCAGAACTCCTCCATTTGCAATAG
TAACTGTGCCCAAAAGCTTGCTTAATTCTTCATCATTCCTCACAGCTAGT
TGAATGTGCCTTGGAACGATACGGTTCTTTTTGTTATCCCTTGCAGCATT
TCCAGCAAGCTCCAAAACCTCAGCAGCAAGGTATTCAAGAACAGCCGATA
GGTAGACGGGGGCGCCGGCACCCACGCGATCGGCGTACTTTCCGGCTTTG
AGGAAGCGAGCAATACGGCCGACGGGGAACTGAAGGCCAGCCTTGTGAGA
TCTGGAAATTGATTTGGTCGACTTGGGCTTGCCTCTGCCGCCCTTCGTTG
ATCCTGCGGAGCTCA
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