DC887747
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A7_ARATH (Probable histone H2A.7 OS=Arabidopsis thaliana GN=At5g59870 PE=1 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 2.532e-32 Identity = 78/128 (60.94%), Postives = 89/128 (69.53%), Query Frame = -3 Query: 195 SAGSTK---GGR---GKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRK 560 S G K GGR G PK TKS+S+S KAGLQFPVGRI RFLK G+YA R+G GAP AGNAARDNKK+RI+PRH+ LA+RNDEEL KLL VTIA+GGVLPNI+ LLP+K Sbjct: 3 STGKVKKAFGGRKPPGAPK-TKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVYMAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPKK 129
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_COCIM (Histone H2A OS=Coccidioides immitis GN=HTA1 PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 3.306e-32 Identity = 74/123 (60.16%), Postives = 83/123 (67.48%), Query Frame = -3 Query: 186 GSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 554 G GG+ S S SRS KAGL FPVGR+ R L+ G YA RVGAGAP AGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGV+P IHQNLLP+K K Sbjct: 3 GGKSGGKASG-SKSSQSRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVMPYIHQNLLPKKTPK 124
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_SIPNU (Histone H2A OS=Sipunculus nudus PE=1 SV=2) HSP 1 Score: 137.502 bits (345), Expect = 4.318e-32 Identity = 74/126 (58.73%), Postives = 86/126 (68.25%), Query Frame = -3 Query: 180 AGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGR 557 +G KGG+ K KS SRS +AGLQFPVGRI R L+ G YA+R+GAGAP AGNAARDNKK RI+PRH+QLA+RNDEEL+KLL VTIA GGVLPNI LLP+K K + Sbjct: 2 SGRGKGGKAKGKSK---SRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQKSK 124
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSJ (Probable histone H2A.6 OS=Oryza sativa subsp. japonica GN=Os05g0113900 PE=2 SV=2) HSP 1 Score: 137.502 bits (345), Expect = 4.318e-32 Identity = 74/127 (58.27%), Postives = 87/127 (68.50%), Query Frame = -3 Query: 153 GKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 533 G PK K +SRS KAGLQFPVGRI R+LK G+YA RVG GAP AGNAARDNKKNRI+PRH+ LA+RNDEEL KLL VTIA+GGVLPNI+ LLP+K + + AS++ Sbjct: 19 GGPKK-KPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKADKPAKASKD 144
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSI (Probable histone H2A.6 OS=Oryza sativa subsp. indica GN=OsI_017523 PE=3 SV=2) HSP 1 Score: 137.502 bits (345), Expect = 4.318e-32 Identity = 74/127 (58.27%), Postives = 87/127 (68.50%), Query Frame = -3 Query: 153 GKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 533 G PK K +SRS KAGLQFPVGRI R+LK G+YA RVG GAP AGNAARDNKKNRI+PRH+ LA+RNDEEL KLL VTIA+GGVLPNI+ LLP+K + + AS++ Sbjct: 19 GGPKK-KPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKADKPAKASKD 144
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A1_SOLLC (Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 4.318e-32 Identity = 75/127 (59.06%), Postives = 87/127 (68.50%), Query Frame = -3 Query: 177 AGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGRE 557 AG KGG K KS+++S KAGLQFPVGRI R+LK G+YA RVG+GAP AGNAARDNKK+RI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+ LLP+K E Sbjct: 10 AGGRKGGPRK----KSVTKSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPIYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDEELGKLLAGVTIASGGVLPNINPVLLPKKSAVAEE 132
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_STRPU (Histone H2A, embryonic OS=Strongylocentrotus purpuratus PE=1 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 5.640e-32 Identity = 74/122 (60.66%), Postives = 86/122 (70.49%), Query Frame = -3 Query: 186 STKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 551 S +G GK + TK+ +RS +AGLQFPVGR+ RFL+ G YA RVG GAP AGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI LLP+K K Sbjct: 2 SGRGKSGKAR-TKAKTRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAK 122
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2AE_PSAMI (Histone H2A, embryonic OS=Psammechinus miliaris PE=3 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 5.640e-32 Identity = 74/122 (60.66%), Postives = 86/122 (70.49%), Query Frame = -3 Query: 186 STKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 551 S +G GK + TK+ +RS +AGLQFPVGR+ RFL+ G YA RVG GAP AGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI LLP+K K Sbjct: 2 SGRGKSGKAR-TKAKTRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAK 122
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A2_MEDTR (Probable histone H2A.2 OS=Medicago truncatula GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 5.640e-32 Identity = 74/121 (61.16%), Postives = 85/121 (70.25%), Query Frame = -3 Query: 195 AGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRK 557 AG KGG + KS ++RS +AGLQFPVGRI R+LK G+YA RVG GAP AGNAARDNKKNRI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+ LLP+K Sbjct: 11 AGGRKGGGPRKKS---VTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 128
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_PLADU (Histone H2A OS=Platynereis dumerilii PE=3 SV=2) HSP 1 Score: 136.732 bits (343), Expect = 7.366e-32 Identity = 74/126 (58.73%), Postives = 86/126 (68.25%), Query Frame = -3 Query: 180 AGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGR 557 +G KGG+ K KS +RS +AGLQFPVGRI R L+ G YA+RVGAGAP AGNAARDNKK RI+PRH+QLA+RNDEEL+KLL VTIA GGVLPNI LLP+K K + Sbjct: 2 SGRGKGGKAKGKSK---TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTTKAK 124 The following BLAST results are available for this feature:
BLAST of DC887747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 239
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887747 ID=DC887747; Name=DC887747; organism=Citrus sinensis; type=EST; length=565bpback to top |