DC887747

Overview
NameDC887747
Unique NameDC887747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_MYTGA (Histone H2A OS=Mytilus galloprovincialis PE=3 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 7.366e-32
Identity = 74/124 (59.68%), Postives = 86/124 (69.35%), Query Frame = -3
Query:  186 AGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 557
            +G  KGG+ K K+    SRS +AGLQFPVGRI R L+ G YA+RVGAGAP                 AGNAARDNKK+RI+PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLP+K  K
Sbjct:    2 SGRGKGGKAKAKAK---SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQK 122          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_MYTED (Histone H2A OS=Mytilus edulis PE=3 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 7.366e-32
Identity = 74/124 (59.68%), Postives = 86/124 (69.35%), Query Frame = -3
Query:  186 AGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 557
            +G  KGG+ K K+    SRS +AGLQFPVGRI R L+ G YA+RVGAGAP                 AGNAARDNKK+RI+PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLP+K  K
Sbjct:    2 SGRGKGGKAKAKAK---SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQK 122          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_MYTCH (Histone H2A OS=Mytilus chilensis PE=3 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 7.366e-32
Identity = 74/124 (59.68%), Postives = 86/124 (69.35%), Query Frame = -3
Query:  186 AGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 557
            +G  KGG+ K K+    SRS +AGLQFPVGRI R L+ G YA+RVGAGAP                 AGNAARDNKK+RI+PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLP+K  K
Sbjct:    2 SGRGKGGKAKAKAK---SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQK 122          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_MYTCA (Histone H2A OS=Mytilus californianus PE=3 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 7.366e-32
Identity = 74/124 (59.68%), Postives = 86/124 (69.35%), Query Frame = -3
Query:  186 AGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 557
            +G  KGG+ K K+    SRS +AGLQFPVGRI R L+ G YA+RVGAGAP                 AGNAARDNKK+RI+PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLP+K  K
Sbjct:    2 SGRGKGGKAKAKAK---SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQK 122          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2AX_XENLA (Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 7.366e-32
Identity = 76/132 (57.58%), Postives = 87/132 (65.91%), Query Frame = -3
Query:  153 GRGKPKS---TKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 539
            GRGK  S    K+ +RS +AGLQFPVGR+ R L+ G YA RVGAGAP                 AGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLP+K   G    G  S +
Sbjct:    3 GRGKAVSKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAHRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKSSGGVSTSGKKSSQ 134          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A3_MEDTR (Probable histone H2A.3 OS=Medicago truncatula PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.366e-32
Identity = 74/121 (61.16%), Postives = 85/121 (70.25%), Query Frame = -3
Query:  195 AGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRK 557
            AG  KGG  + KS   ++RS +AGLQFPVGRI R+LK G+YA RVG GAP                 AGNAARDNKKNRI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+  LLP+K
Sbjct:   12 AGGRKGGGPRKKS---VTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKK 129          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A2_SCHPO (Histone H2A-beta OS=Schizosaccharomyces pombe GN=hta2 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 7.366e-32
Identity = 73/127 (57.48%), Postives = 87/127 (68.50%), Query Frame = -3
Query:  180 SAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGR 560
            S G + G     KS +S  RS KAGL FPVGR+ R L+ G YA RVGAGAP                 AGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI+ +LLP++ GKG+
Sbjct:    2 SGGKSGGKAAVAKSAQS--RSAKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKQSGKGK 126          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_LITVA (Histone H2A OS=Litopenaeus vannamei PE=1 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 9.620e-32
Identity = 76/124 (61.29%), Postives = 85/124 (68.55%), Query Frame = -3
Query:  186 AGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 557
            +G  KGG+ K KS    SRS +AGLQFPVGRI R L+ G YA+RVGAGAP                 AGNAARDNKK RIVPRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLP+K  K
Sbjct:    2 SGRGKGGKVKGKSK---SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIVPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSJ (Probable histone H2A.5 OS=Oryza sativa subsp. japonica GN=Os01g0502700 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.620e-32
Identity = 73/122 (59.84%), Postives = 85/122 (69.67%), Query Frame = -3
Query:  195 SAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRK 560
            +AG   GG  K    K++SRS KAGLQFPVGRI R+LK G+YA R+G GAP                 AGNAARDNKKNRI+PRH+ LA+RNDEEL KLL  VTIA+GGVLPNI+  LLP+K
Sbjct:   16 AAGRKAGGPRK----KAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 133          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSI (Probable histone H2A.5 OS=Oryza sativa subsp. indica GN=OsI_002060 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.620e-32
Identity = 73/122 (59.84%), Postives = 85/122 (69.67%), Query Frame = -3
Query:  195 SAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRK 560
            +AG   GG  K    K++SRS KAGLQFPVGRI R+LK G+YA R+G GAP                 AGNAARDNKKNRI+PRH+ LA+RNDEEL KLL  VTIA+GGVLPNI+  LLP+K
Sbjct:   16 AAGRKAGGPRK----KAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 133          
The following BLAST results are available for this feature:
BLAST of DC887747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A_MYTGA7.366e-3259.68Histone H2A OS=Mytilus galloprovincialis PE=3 SV=3[more]
H2A_MYTED7.366e-3259.68Histone H2A OS=Mytilus edulis PE=3 SV=3[more]
H2A_MYTCH7.366e-3259.68Histone H2A OS=Mytilus chilensis PE=3 SV=3[more]
H2A_MYTCA7.366e-3259.68Histone H2A OS=Mytilus californianus PE=3 SV=3[more]
H2AX_XENLA7.366e-3257.58Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3[more]
H2A3_MEDTR7.366e-3261.16Probable histone H2A.3 OS=Medicago truncatula PE=3... [more]
H2A2_SCHPO7.366e-3257.48Histone H2A-beta OS=Schizosaccharomyces pombe GN=h... [more]
H2A_LITVA9.620e-3261.29Histone H2A OS=Litopenaeus vannamei PE=1 SV=3[more]
H2A5_ORYSJ9.620e-3259.84Probable histone H2A.5 OS=Oryza sativa subsp. japo... [more]
H2A5_ORYSI9.620e-3259.84Probable histone H2A.5 OS=Oryza sativa subsp. indi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887747 EIC Citrus sinensis cDNA clone EIC0823 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887747 ID=DC887747; Name=DC887747; organism=Citrus sinensis; type=EST; length=565bp
TTTTGTTTCCTATATTCGGCCGGANCCCAAATCCCAGTTTACACGGAGAT
AAAAGGATCACAAATAAAGAAAAAAATTGCGTAAATCAATCAATCCTGCA
TTTTTTTTTTAAGTATTCAAATTCAACAAGCAGAGAAGTTTCAGCACTAA
AATTCTTGCGAAGCAGATCCAATATCCTCCCTTCCTTTGCCCATTTTCCT
TGGCAACAGGTTCTGATGAATGTTTGGCAGAACTCCTCCATTTGCAATAG
TAACTGTGCCCAAAAGCTTGCTTAATTCTTCATCATTCCTCACAGCTAGT
TGAATGTGCCTTGGAACGATACGGTTCTTTTTGTTATCCCTTGCAGCATT
TCCAGCAAGCTCCAAAACCTCAGCAGCAAGGTATTCAAGAACAGCCGATA
GGTAGACGGGGGCGCCGGCACCCACGCGATCGGCGTACTTTCCGGCTTTG
AGGAAGCGAGCAATACGGCCGACGGGGAACTGAAGGCCAGCCTTGTGAGA
TCTGGAAATTGATTTGGTCGACTTGGGCTTGCCTCTGCCGCCCTTCGTTG
ATCCTGCGGAGCTCA
back to top