DC887747
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_MYTGA (Histone H2A OS=Mytilus galloprovincialis PE=3 SV=3) HSP 1 Score: 136.732 bits (343), Expect = 7.366e-32 Identity = 74/124 (59.68%), Postives = 86/124 (69.35%), Query Frame = -3 Query: 186 AGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 557 +G KGG+ K K+ SRS +AGLQFPVGRI R L+ G YA+RVGAGAP AGNAARDNKK+RI+PRH+QLA+RNDEEL+KLL VTIA GGVLPNI LLP+K K Sbjct: 2 SGRGKGGKAKAKAK---SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQK 122
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_MYTED (Histone H2A OS=Mytilus edulis PE=3 SV=3) HSP 1 Score: 136.732 bits (343), Expect = 7.366e-32 Identity = 74/124 (59.68%), Postives = 86/124 (69.35%), Query Frame = -3 Query: 186 AGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 557 +G KGG+ K K+ SRS +AGLQFPVGRI R L+ G YA+RVGAGAP AGNAARDNKK+RI+PRH+QLA+RNDEEL+KLL VTIA GGVLPNI LLP+K K Sbjct: 2 SGRGKGGKAKAKAK---SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQK 122
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_MYTCH (Histone H2A OS=Mytilus chilensis PE=3 SV=3) HSP 1 Score: 136.732 bits (343), Expect = 7.366e-32 Identity = 74/124 (59.68%), Postives = 86/124 (69.35%), Query Frame = -3 Query: 186 AGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 557 +G KGG+ K K+ SRS +AGLQFPVGRI R L+ G YA+RVGAGAP AGNAARDNKK+RI+PRH+QLA+RNDEEL+KLL VTIA GGVLPNI LLP+K K Sbjct: 2 SGRGKGGKAKAKAK---SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQK 122
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_MYTCA (Histone H2A OS=Mytilus californianus PE=3 SV=3) HSP 1 Score: 136.732 bits (343), Expect = 7.366e-32 Identity = 74/124 (59.68%), Postives = 86/124 (69.35%), Query Frame = -3 Query: 186 AGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 557 +G KGG+ K K+ SRS +AGLQFPVGRI R L+ G YA+RVGAGAP AGNAARDNKK+RI+PRH+QLA+RNDEEL+KLL VTIA GGVLPNI LLP+K K Sbjct: 2 SGRGKGGKAKAKAK---SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQK 122
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2AX_XENLA (Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3) HSP 1 Score: 136.732 bits (343), Expect = 7.366e-32 Identity = 76/132 (57.58%), Postives = 87/132 (65.91%), Query Frame = -3 Query: 153 GRGKPKS---TKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 539 GRGK S K+ +RS +AGLQFPVGR+ R L+ G YA RVGAGAP AGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI LLP+K G G S + Sbjct: 3 GRGKAVSKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAHRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKSSGGVSTSGKKSSQ 134
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A3_MEDTR (Probable histone H2A.3 OS=Medicago truncatula PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 7.366e-32 Identity = 74/121 (61.16%), Postives = 85/121 (70.25%), Query Frame = -3 Query: 195 AGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRK 557 AG KGG + KS ++RS +AGLQFPVGRI R+LK G+YA RVG GAP AGNAARDNKKNRI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+ LLP+K Sbjct: 12 AGGRKGGGPRKKS---VTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKK 129
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A2_SCHPO (Histone H2A-beta OS=Schizosaccharomyces pombe GN=hta2 PE=1 SV=2) HSP 1 Score: 136.732 bits (343), Expect = 7.366e-32 Identity = 73/127 (57.48%), Postives = 87/127 (68.50%), Query Frame = -3 Query: 180 SAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGR 560 S G + G KS +S RS KAGL FPVGR+ R L+ G YA RVGAGAP AGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI+ +LLP++ GKG+ Sbjct: 2 SGGKSGGKAAVAKSAQS--RSAKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKQSGKGK 126
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_LITVA (Histone H2A OS=Litopenaeus vannamei PE=1 SV=3) HSP 1 Score: 136.346 bits (342), Expect = 9.620e-32 Identity = 76/124 (61.29%), Postives = 85/124 (68.55%), Query Frame = -3 Query: 186 AGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 557 +G KGG+ K KS SRS +AGLQFPVGRI R L+ G YA+RVGAGAP AGNAARDNKK RIVPRH+QLA+RNDEEL+KLL VTIA GGVLPNI LLP+K K Sbjct: 2 SGRGKGGKVKGKSK---SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIVPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSJ (Probable histone H2A.5 OS=Oryza sativa subsp. japonica GN=Os01g0502700 PE=2 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 9.620e-32 Identity = 73/122 (59.84%), Postives = 85/122 (69.67%), Query Frame = -3 Query: 195 SAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRK 560 +AG GG K K++SRS KAGLQFPVGRI R+LK G+YA R+G GAP AGNAARDNKKNRI+PRH+ LA+RNDEEL KLL VTIA+GGVLPNI+ LLP+K Sbjct: 16 AAGRKAGGPRK----KAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 133
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSI (Probable histone H2A.5 OS=Oryza sativa subsp. indica GN=OsI_002060 PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 9.620e-32 Identity = 73/122 (59.84%), Postives = 85/122 (69.67%), Query Frame = -3 Query: 195 SAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRK 560 +AG GG K K++SRS KAGLQFPVGRI R+LK G+YA R+G GAP AGNAARDNKKNRI+PRH+ LA+RNDEEL KLL VTIA+GGVLPNI+ LLP+K Sbjct: 16 AAGRKAGGPRK----KAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 133 The following BLAST results are available for this feature:
BLAST of DC887747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 239
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887747 ID=DC887747; Name=DC887747; organism=Citrus sinensis; type=EST; length=565bpback to top |