DC887740

Overview
NameDC887740
Unique NameDC887740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:976..1781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC887740 vs. ExPASy Swiss-Prot
Match: METK1_ORYSJ (S-adenosylmethionine synthetase 1 OS=Oryza sativa subsp. japonica GN=SAM1 PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.954e-69
Identity = 127/150 (84.67%), Postives = 135/150 (90.00%), Query Frame = -2 
Query:  356 HGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 805
            HGDAGLTGRKIIIDTY            GKDPTKVDRSGAY+ RQAAKSIVA+GLARRCIVQVSYAIGVPEPLSVFVD+YGTG+IPDKEILKIVKE+FDFRPGM+ INLDLK+GGNGR+LKTAAYGHFGRDDPDFTWEVVKPLKWEKP A
Sbjct:  247 HGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYVARQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGRIPDKEILKIVKENFDFRPGMIIINLDLKKGGNGRYLKTAAYGHFGRDDPDFTWEVVKPLKWEKPSA 396
[Close]
BLAST of DC887740 vs. ExPASy Swiss-Prot
Match: METK1_ORYSI (S-adenosylmethionine synthetase 1 OS=Oryza sativa subsp. indica GN=SAM1 PE=2 SV=2)

HSP 1 Score: 261.922 bits (668), Expect = 2.954e-69
Identity = 127/150 (84.67%), Postives = 135/150 (90.00%), Query Frame = -2 
Query:  356 HGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 805
            HGDAGLTGRKIIIDTY            GKDPTKVDRSGAY+ RQAAKSIVA+GLARRCIVQVSYAIGVPEPLSVFVD+YGTG+IPDKEILKIVKE+FDFRPGM+ INLDLK+GGNGR+LKTAAYGHFGRDDPDFTWEVVKPLKWEKP A
Sbjct:  247 HGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYVARQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGRIPDKEILKIVKENFDFRPGMIIINLDLKKGGNGRYLKTAAYGHFGRDDPDFTWEVVKPLKWEKPSA 396
[Close]
BLAST of DC887740 vs. ExPASy Swiss-Prot
Match: METK2_BETVU (S-adenosylmethionine synthetase 2 OS=Beta vulgaris GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 3.858e-69
Identity = 130/147 (88.44%), Postives = 133/147 (90.48%), Query Frame = -2 
Query:  365 HGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 805
            HGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKSIVANGLARR IVQVSYAIGVPEPLSVFVD+YGTGKIPDKEILKIVKE+FDFRPGMM+INLDLKRGGNGRF KTAAYGHFGRDDPDFTWEVVKPLKWEK
Sbjct:  244 HGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRAIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKETFDFRPGMMSINLDLKRGGNGRFQKTAAYGHFGRDDPDFTWEVVKPLKWEK 390
[Close]
BLAST of DC887740 vs. ExPASy Swiss-Prot
Match: METK1_PETCR (S-adenosylmethionine synthetase 1 (Fragment) OS=Petroselinum crispum GN=SMS-1 PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 5.039e-69
Identity = 128/147 (87.07%), Postives = 135/147 (91.84%), Query Frame = -2 
Query:  365 HGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 805
            HGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKSIVA+GLARRCIVQVSYAIGVPEPLSVFVD+YGTGKIPD+EILKIVKE+FDFRPGM++INLDLKRGGNGRFLKTAAYGHFGR+DPDFTWEVVKPLKWEK
Sbjct:   87 HGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDREILKIVKETFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGREDPDFTWEVVKPLKWEK 233
[Close]
BLAST of DC887740 vs. ExPASy Swiss-Prot
Match: METK1_BRAJU (S-adenosylmethionine synthetase 1 OS=Brassica juncea GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 5.039e-69
Identity = 128/149 (85.91%), Postives = 134/149 (89.93%), Query Frame = -2 
Query:  356 GDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 802
            GDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQ+AKS+VANG+ARR +VQVSYAIGVPEP SVFVD+YGTG IPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:  245 GDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQSAKSVVANGMARRALVQVSYAIGVPEPFSVFVDTYGTGLIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393
[Close]
BLAST of DC887740 vs. ExPASy Swiss-Prot
Match: METK_GOSHI (S-adenosylmethionine synthetase OS=Gossypium hirsutum GN=SAMS PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.915e-68
Identity = 128/150 (85.33%), Postives = 133/150 (88.67%), Query Frame = -2 
Query:  356 HGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 805
            HGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKSIVANGLARRC+VQVSYAIGVPEPLSVFVD+YGTGKIPDKEILKIVKE+FDFRPGM+ INLDLKRGGN RFLKTAAYGHFGRDD DFTWEVVKPLKW+K  A
Sbjct:  244 HGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCVVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKETFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGRDDTDFTWEVVKPLKWDKVHA 393
[Close]
BLAST of DC887740 vs. ExPASy Swiss-Prot
Match: METK4_VITVI (S-adenosylmethionine synthetase 4 OS=Vitis vinifera GN=METK4 PE=3 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 3.266e-68
Identity = 130/149 (87.25%), Postives = 133/149 (89.26%), Query Frame = -2 
Query:  359 HGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 805
            HGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKSIVA+GLARRCIVQVSYAIGVPEPLSVFVD+Y TGKIPDKEILKIVKESFDFRPGM+ INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK EK Q
Sbjct:  244 HGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYATGKIPDKEILKIVKESFDFRPGMIAINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKAEKAQ 392
[Close]
BLAST of DC887740 vs. ExPASy Swiss-Prot
Match: METK2_POPTR (S-adenosylmethionine synthetase 2 OS=Populus trichocarpa GN=METK2 PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 3.266e-68
Identity = 129/149 (86.58%), Postives = 133/149 (89.26%), Query Frame = -2 
Query:  359 HGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 805
            HGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKSIVA+GLARRCIVQVSYAIGVPEPLSVFVD+YGTGKIPDKEIL IVKE FDFRPGM+ I+LDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK EKPQ
Sbjct:  244 HGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILNIVKEKFDFRPGMIAISLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKSEKPQ 392
[Close]
BLAST of DC887740 vs. ExPASy Swiss-Prot
Match: METK5_POPTR (S-adenosylmethionine synthetase 5 OS=Populus trichocarpa GN=METK5 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 4.266e-68
Identity = 127/146 (86.99%), Postives = 133/146 (91.10%), Query Frame = -2 
Query:  368 HGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWE 805
            HGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKSIVA+GLARRCIVQVSYAIGVPEPLSVFVD+YGTGKIPDKEIL+IVKESFDFRPGM++INLDLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKPLKW+
Sbjct:  245 HGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILQIVKESFDFRPGMISINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKPLKWD 390
[Close]
BLAST of DC887740 vs. ExPASy Swiss-Prot
Match: METK3_POPTR (S-adenosylmethionine synthetase 3 OS=Populus trichocarpa GN=METK3 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 4.266e-68
Identity = 127/146 (86.99%), Postives = 133/146 (91.10%), Query Frame = -2 
Query:  368 HGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWE 805
            HGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKSIVA+GLARRCIVQVSYAIGVPEPLSVFVD+YGTGKIPDKEIL+IVKESFDFRPGM++INLDLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKPLKW+
Sbjct:  245 HGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILQIVKESFDFRPGMISINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKPLKWD 390
The following BLAST results are available for this feature:
BLAST of DC887740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK1_ORYSJ2.954e-6984.67S-adenosylmethionine synthetase 1 OS=Oryza sativa ... [more]
METK1_ORYSI2.954e-6984.67S-adenosylmethionine synthetase 1 OS=Oryza sativa ... [more]
METK2_BETVU3.858e-6988.44S-adenosylmethionine synthetase 2 OS=Beta vulgaris... [more]
METK1_PETCR5.039e-6987.07S-adenosylmethionine synthetase 1 (Fragment) OS=Pe... [more]
METK1_BRAJU5.039e-6985.91S-adenosylmethionine synthetase 1 OS=Brassica junc... [more]
METK_GOSHI1.915e-6885.33S-adenosylmethionine synthetase OS=Gossypium hirsu... [more]
METK4_VITVI3.266e-6887.25S-adenosylmethionine synthetase 4 OS=Vitis vinifer... [more]
METK2_POPTR3.266e-6886.58S-adenosylmethionine synthetase 2 OS=Populus trich... [more]
METK5_POPTR4.266e-6886.99S-adenosylmethionine synthetase 5 OS=Populus trich... [more]
METK3_POPTR4.266e-6886.99S-adenosylmethionine synthetase 3 OS=Populus trich... [more]

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Properties
Property NameValue
Genbank descriptionDC887740 EIC Citrus sinensis cDNA clone EIC0815 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887740 ID=DC887740; Name=DC887740; organism=Citrus sinensis; type=EST; length=806bp
GGCTTTAGCCAAAGTTACAAATTAATACAACTCGCTGCTGCCTTCATTCT
ACATTCCAAAAATAGTCGTAAGCAAAAGGAAGAATTTTACTAATTCCAGG
CACCAGTTGAGCAAAATTCTCAATCGATATCACTACACAACAGTGGTGAC
ATGGTACATTAAACCAAAACCAAAAAAGAAGTGGGGAAAGAAGAAAAAGA
AAGGAATTGAATGGGGAACATGTATGAGTTCTGAACACAGGAGATTTGCT
TAGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTCATCCACTAC
CAATAGAAGCAAACTTGAACAGCAGGGATAGTTTTCACTTTTCAACTCAA
ATTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAACTTCCCAAGT
GAAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAGTCTTCAAGA
ACCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTCATCATTCCT
GGCCTGAAATCAAAGCTTTCCTTCACAATTTTGAGGATCTCCTTGTCAGG
AATCTTGCCGGTTCCATATGAGTCCACAAAAACAGACAATGGCTCAGGCA
CACCAATGGCATAGGAGACTTGGACAATGCACCTGCGAGCAAGCCCGTTT
GCAACAATGCTCTTAGCAGCCTGCCTAACAATGTATGCACCACTCCTATC
CACCTTAGTAGGGTCTTTTCCAGAGAAAGCACCGCCACCATGGGCTCCCC
AGCCACCATAAGTGTCGATGATGATCTTACGTCCAGTGAGACCAGCATCA
CCATGA
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