DC887740

Overview
NameDC887740
Unique NameDC887740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:976..1781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887740 vs. ExPASy Swiss-Prot
Match: METK_POPDE (S-adenosylmethionine synthetase OS=Populus deltoides GN=METK PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.051e-66
Identity = 124/146 (84.93%), Postives = 132/146 (90.41%), Query Frame = -2
Query:  368 HGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWE 805
            HG++GLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKSIVA+GLARRCIVQVSYAIGVPEPLSVFVD+YGTGKIPDKEIL+IVKE FDFRPGM++INLDLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKPLKW+
Sbjct:  245 HGESGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILQIVKERFDFRPGMISINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKPLKWD 390          
BLAST of DC887740 vs. ExPASy Swiss-Prot
Match: METK4_ARATH (S-adenosylmethionine synthetase 4 OS=Arabidopsis thaliana GN=METK4 PE=1 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.372e-66
Identity = 129/150 (86.00%), Postives = 133/150 (88.67%), Query Frame = -2
Query:  356 HGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 805
            HGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKSIVA+GLARR IVQVSYAIGVPEPLSVFVDSYGTGKIPDKEIL+IVKESFDFRPGM++INLDLKRGGNGRFLKTAAYGHFGRDD DFTWEVVKPLK  K QA
Sbjct:  244 HGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRVIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILEIVKESFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDADFTWEVVKPLKSNKVQA 393          
BLAST of DC887740 vs. ExPASy Swiss-Prot
Match: METK2_PETCR (S-adenosylmethionine synthetase 2 (Fragment) OS=Petroselinum crispum GN=SMS-2 PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.372e-66
Identity = 125/144 (86.81%), Postives = 132/144 (91.67%), Query Frame = -2
Query:  365 AGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 796
            AGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKSIVA+GLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPD+EIL+IVKE+FDFRPGM++INLDLKRGGNGRFLKTAAYGHFGR+DPDFTWEVVKPLKWEK
Sbjct:    1 AGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDREILQIVKETFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGREDPDFTWEVVKPLKWEK 144          
BLAST of DC887740 vs. ExPASy Swiss-Prot
Match: METK_WHEAT (S-adenosylmethionine synthetase OS=Triticum aestivum GN=SAMS PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.341e-66
Identity = 123/150 (82.00%), Postives = 132/150 (88.00%), Query Frame = -2
Query:  356 HGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 805
            HGDAGLTGRKIIIDTY            GKDPTKVDRSGAY+ RQAAKSIVA+G+ARRCIVQVSYAIGVPEPLSVFVD+YGTGKIPDKEIL+IVKE+FDFRPGM+ INLDLKRGG GR+LKTAAYGHFGR+  DFTWEVVKPLKWEKP A
Sbjct:  247 HGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYVARQAAKSIVASGIARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILEIVKENFDFRPGMIIINLDLKRGGKGRYLKTAAYGHFGREGADFTWEVVKPLKWEKPSA 396          
BLAST of DC887740 vs. ExPASy Swiss-Prot
Match: METK_CARPA (S-adenosylmethionine synthetase OS=Carica papaya GN=SAMS PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.341e-66
Identity = 125/142 (88.03%), Postives = 129/142 (90.85%), Query Frame = -2
Query:  380 HGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKP 805
            HGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSV+VD+YGTGKIPDKEILKIVKE+FDFRPGM+TINLDLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKP
Sbjct:  244 HGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVYVDTYGTGKIPDKEILKIVKENFDFRPGMITINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKP 385          
BLAST of DC887740 vs. ExPASy Swiss-Prot
Match: METK_MEDFA (S-adenosylmethionine synthetase OS=Medicago falcata GN=SAMS PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 3.057e-66
Identity = 127/147 (86.39%), Postives = 130/147 (88.44%), Query Frame = -2
Query:  365 HGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 805
            HGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEIL IVKE+FDFRPGM++INLDLKRGGN RFLKTAAYGHFGRDD DFTWEVVKPLK  K
Sbjct:  246 HGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILNIVKETFDFRPGMISINLDLKRGGNNRFLKTAAYGHFGRDDADFTWEVVKPLKGGK 392          
BLAST of DC887740 vs. ExPASy Swiss-Prot
Match: METK1_BETVU (S-adenosylmethionine synthetase 1 OS=Beta vulgaris GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 3.993e-66
Identity = 124/150 (82.67%), Postives = 134/150 (89.33%), Query Frame = -2
Query:  356 HGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 805
            HGDAGLTGRKIIIDTY            GKDPTKVDRSGAYI RQAAKSIVA+GLARRCIVQ+SYAIGVPEPLSVFVD+YGTGKIPDK+ILKIVKE+FDFRPGM+ INLDL +GG+ R+LKTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:  248 HGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIARQAAKSIVASGLARRCIVQISYAIGVPEPLSVFVDTYGTGKIPDKDILKIVKETFDFRPGMIAINLDLLKGGS-RYLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 396          
BLAST of DC887740 vs. ExPASy Swiss-Prot
Match: METK2_PINCO (S-adenosylmethionine synthetase 2 OS=Pinus contorta GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.517e-65
Identity = 124/150 (82.67%), Postives = 129/150 (86.00%), Query Frame = -2
Query:  356 HGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 805
            HGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKSIVA GLARRC+VQVSYAIGV   LS+FVDSYGTG IPDKEIL+I+KE FDFRPGM+TINLDLKRGGNGRF KTAAYGHFGRDDPDFTWE VKPLKWEK QA
Sbjct:  244 HGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVAAGLARRCLVQVSYAIGVRGALSIFVDSYGTGSIPDKEILEIIKEHFDFRPGMITINLDLKRGGNGRFQKTAAYGHFGRDDPDFTWETVKPLKWEKAQA 393          
BLAST of DC887740 vs. ExPASy Swiss-Prot
Match: METK3_ATRNU (S-adenosylmethionine synthetase 3 OS=Atriplex nummularia GN=SAMS3 PE=1 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.982e-65
Identity = 125/150 (83.33%), Postives = 131/150 (87.33%), Query Frame = -2
Query:  356 HGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 805
            HGDAGLTGRKIIIDTY            GKDPTKVDRSGAYI RQAAKSIVA GLARRCIVQ+SYAIGVPEPLSVFVD+YGTGKIPDKEILKIVKESFDFRPGM+ INLDL +GG+ R+LKTAAYGHFGRDD DFTWE VKPLKWEKPQA
Sbjct:  248 HGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIARQAAKSIVAAGLARRCIVQISYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKESFDFRPGMIAINLDLLKGGS-RYLKTAAYGHFGRDDADFTWETVKPLKWEKPQA 396          
BLAST of DC887740 vs. ExPASy Swiss-Prot
Match: METK4_ATRNU (S-adenosylmethionine synthetase 4 OS=Atriplex nummularia GN=SAMS4 PE=1 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 4.414e-65
Identity = 124/150 (82.67%), Postives = 131/150 (87.33%), Query Frame = -2
Query:  356 HGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 805
            HGDAGLTGRKIIIDTY            GKDPTKVDRSGAYI RQAAKSIVA GLARRCIVQ+SYAIGVPEPLSVFVD+YGTGKIPDKEILKIVKE+FDFRPGM+ INLDL +GG+ R+LKTAAYGHFGRDD DFTWE VKPLKWEKPQA
Sbjct:  248 HGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIARQAAKSIVAAGLARRCIVQISYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKETFDFRPGMIAINLDLLKGGS-RYLKTAAYGHFGRDDADFTWETVKPLKWEKPQA 396          
The following BLAST results are available for this feature:
BLAST of DC887740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_POPDE1.051e-6684.93S-adenosylmethionine synthetase OS=Populus deltoid... [more]
METK4_ARATH1.372e-6686.00S-adenosylmethionine synthetase 4 OS=Arabidopsis t... [more]
METK2_PETCR1.372e-6686.81S-adenosylmethionine synthetase 2 (Fragment) OS=Pe... [more]
METK_WHEAT2.341e-6682.00S-adenosylmethionine synthetase OS=Triticum aestiv... [more]
METK_CARPA2.341e-6688.03S-adenosylmethionine synthetase OS=Carica papaya G... [more]
METK_MEDFA3.057e-6686.39S-adenosylmethionine synthetase OS=Medicago falcat... [more]
METK1_BETVU3.993e-6682.67S-adenosylmethionine synthetase 1 OS=Beta vulgaris... [more]
METK2_PINCO1.517e-6582.67S-adenosylmethionine synthetase 2 OS=Pinus contort... [more]
METK3_ATRNU1.982e-6583.33S-adenosylmethionine synthetase 3 OS=Atriplex numm... [more]
METK4_ATRNU4.414e-6582.67S-adenosylmethionine synthetase 4 OS=Atriplex numm... [more]

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Properties
Property NameValue
Genbank descriptionDC887740 EIC Citrus sinensis cDNA clone EIC0815 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887740 ID=DC887740; Name=DC887740; organism=Citrus sinensis; type=EST; length=806bp
GGCTTTAGCCAAAGTTACAAATTAATACAACTCGCTGCTGCCTTCATTCT
ACATTCCAAAAATAGTCGTAAGCAAAAGGAAGAATTTTACTAATTCCAGG
CACCAGTTGAGCAAAATTCTCAATCGATATCACTACACAACAGTGGTGAC
ATGGTACATTAAACCAAAACCAAAAAAGAAGTGGGGAAAGAAGAAAAAGA
AAGGAATTGAATGGGGAACATGTATGAGTTCTGAACACAGGAGATTTGCT
TAGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTCATCCACTAC
CAATAGAAGCAAACTTGAACAGCAGGGATAGTTTTCACTTTTCAACTCAA
ATTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAACTTCCCAAGT
GAAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAGTCTTCAAGA
ACCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTCATCATTCCT
GGCCTGAAATCAAAGCTTTCCTTCACAATTTTGAGGATCTCCTTGTCAGG
AATCTTGCCGGTTCCATATGAGTCCACAAAAACAGACAATGGCTCAGGCA
CACCAATGGCATAGGAGACTTGGACAATGCACCTGCGAGCAAGCCCGTTT
GCAACAATGCTCTTAGCAGCCTGCCTAACAATGTATGCACCACTCCTATC
CACCTTAGTAGGGTCTTTTCCAGAGAAAGCACCGCCACCATGGGCTCCCC
AGCCACCATAAGTGTCGATGATGATCTTACGTCCAGTGAGACCAGCATCA
CCATGA
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