CN185220

Overview
NameCN185220
Unique NameCN185220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: CRF5_ARATH (Ethylene-responsive transcription factor CRF5 OS=Arabidopsis thaliana GN=CRF5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.559e-11
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = -3
Query:  318 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNF 485
            +RGVR+R WG + +EIR P  +TR+WLG+F +AE+AA  YD AA  +KG+ A  NF
Sbjct:   99 YRGVRQRPWGKFAAEIRDPSSRTRLWLGTFATAEEAAIGYDRAAIRIKGHNAQTNF 154          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.343e-11
Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = -3
Query:  285 FRGVRKRRWGSYVSEIRLPGEK-TRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPE 485
            +RGVR+R WG + +EIR P +   R+WLG++ SAE+AA AY  AAF ++G  A LNFP   G L  PE
Sbjct:  107 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFPHRIG-LNEPE 173          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.343e-11
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = -3
Query:  315 FRGVRKRRWGSYVSEIRLPGEK-TRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 485
            +RGVR+R WG + +EIR P +   R+WLG+F +AE AA AYD AAF ++G+ A LNFP
Sbjct:  117 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFP 174          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: DRE2D_ARATH (Dehydration-responsive element-binding protein 2D OS=Arabidopsis thaliana GN=DREB2D PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.343e-11
Identity = 33/68 (48.53%), Postives = 45/68 (66.18%), Query Frame = -3
Query:  282 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPES 485
            ++GVR+R WG +V+EIR P    R+WLG+F ++ +AA AYDSAA  L G  A LN P S  + P+  S
Sbjct:   42 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSREAALAYDSAARKLYGPEAHLNLPESLRSYPKTAS 109          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF97_ARATH (Ethylene-responsive transcription factor 14 OS=Arabidopsis thaliana GN=ERF14 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.366e-11
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = -3
Query:  315 FRGVRKRRWGSYVSEIRLPGEK-TRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 485
            +RGVR+R WG Y +EIR   +   R+WLG+F +AE AARAYD AA+ ++G  A LNFP
Sbjct:   20 YRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAYDRAAYSMRGKAAILNFP 77          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ESR1_ARATH (Ethylene-responsive transcription factor ESR1 OS=Arabidopsis thaliana GN=ESR1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.702e-11
Identity = 36/69 (52.17%), Postives = 45/69 (65.22%), Query Frame = -3
Query:  288 TPFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP-ASAGALPRP 491
            T +RGVR+R WG Y +EIR P  K R WLG+F +AE+AA AYDSAA   +G  A  NF   +A  +P P
Sbjct:   55 TRYRGVRRRPWGRYAAEIRDPMSKERRWLGTFDTAEQAACAYDSAARAFRGAKARTNFTYPTAVIMPEP 123          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF25_ARATH (Ethylene-responsive transcription factor ERF025 OS=Arabidopsis thaliana GN=ERF025 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.702e-11
Identity = 40/75 (53.33%), Postives = 46/75 (61.33%), Query Frame = -3
Query:  261 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQ 485
            FRG+R R  G +VSEIR P + TRIWLG++   E AA AYD AA  LKG  A LNFP  A     P S S  DI+
Sbjct:   65 FRGIRLRN-GKWVSEIREPRKTTRIWLGTYPVPEMAAAAYDVAALALKGPDAVLNFPGLALTYVAPVSNSAADIR 138          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: DRE1F_ORYSJ (Dehydration-responsive element-binding protein 1F OS=Oryza sativa subsp. japonica GN=DREB1F PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.702e-11
Identity = 38/78 (48.72%), Postives = 51/78 (65.38%), Query Frame = -3
Query:  258 FRGVRKRRWGS-YVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNL-ATLNFPASAGALPRPESCSRKDIQV 485
            +RGVR R  GS +V E+R P  + RIWLG++ + E AARA+D AA  L+G   A LNFP S   LPR  + S +DI++
Sbjct:   47 YRGVRARAGGSRWVCEVREPQAQARIWLGTYPTPEMAARAHDVAAIALRGERGAELNFPDSPSTLPRARTASPEDIRL 124          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: DRE1F_ORYSI (Dehydration-responsive element-binding protein 1F OS=Oryza sativa subsp. indica GN=DREB1F PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.702e-11
Identity = 38/78 (48.72%), Postives = 51/78 (65.38%), Query Frame = -3
Query:  258 FRGVRKRRWGS-YVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNL-ATLNFPASAGALPRPESCSRKDIQV 485
            +RGVR R  GS +V E+R P  + RIWLG++ + E AARA+D AA  L+G   A LNFP S   LPR  + S +DI++
Sbjct:   47 YRGVRARAGGSRWVCEVREPQAQARIWLGTYPTPEMAARAHDVAAIALRGERGAELNFPDSPSTLPRARTASPEDIRL 124          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = -3
Query:  312 FRGVRKRRWGSYVSEIRLPGEK-TRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPA 485
            +RGVR+R WG Y +EIR       R+WLG+F +AE+AA AYD AAF ++G  A LNFP+
Sbjct:   59 YRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFPS 117          
The following BLAST results are available for this feature:
BLAST of CN185220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
CRF5_ARATH2.559e-1153.57Ethylene-responsive transcription factor CRF5 OS=A... [more]
ERF1_SOLLC3.343e-1151.47Ethylene-responsive transcription factor 1 OS=Sola... [more]
EF101_ARATH3.343e-1155.17Ethylene-responsive transcription factor 2 OS=Arab... [more]
DRE2D_ARATH3.343e-1148.53Dehydration-responsive element-binding protein 2D ... [more]
ERF97_ARATH4.366e-1155.17Ethylene-responsive transcription factor 14 OS=Ara... [more]
ESR1_ARATH5.702e-1152.17Ethylene-responsive transcription factor ESR1 OS=A... [more]
ERF25_ARATH5.702e-1153.33Ethylene-responsive transcription factor ERF025 OS... [more]
DRE1F_ORYSJ5.702e-1148.72Dehydration-responsive element-binding protein 1F ... [more]
DRE1F_ORYSI5.702e-1148.72Dehydration-responsive element-binding protein 1F ... [more]
PTI5_SOLLC9.726e-1154.24Pathogenesis-related genes transcriptional activat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P24_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185220 ID=CN185220; Name=CN185220; organism=Citrus sinensis; type=EST; length=574bp
GATTTTACACAAAAAAAAGTCCTTTACAATTCTAAACAAGACCCCAGTAG
AAAATTATCATCATCCATCCAACAATACAGCTCCCCAATGTCCGAGTCAA
ATCTGGGTGGACTCAGCAATGGCGCCACCTTCACTTCATCAGACGCCGTC
GTTTCCCTTTCCCACCAATCTCCACAGTCCGGTTCACCACCCGAACCGCT
GCATTCCGACTCAATCCGGTCGCCCATCTCTACAAGAGCCGCAGCTTTAG
CGGCTGCTACCTGTATGTCTTTCCTCGAACAAGACTCCGGTCGAGGAAGC
GCGCCGGCCGAGGCCGGAAAGTTAAGAGTCGCCAAGTTGCCTTTTAAATA
GAAAGCCGCAGAGTCATAAGCCCGAGCCGCCTTCTCGGCTGACCCAAATG
ACCCGAGCCATATCCGGGTCTTTTCACCTGGCAACCGTATCTCCGAAACG
TAGCTGCCCCACCTCCGTTTACGCACTCCCCGAAACGGCGTGTCGTTTTG
GCGTGTCCTTTTCTTTGAACCCGGTTTGGAGGTTGACGAACCGGGTTGAA
GTTGTGAAGGCTCTTGTGTTTGTG
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