CN185220

Overview
NameCN185220
Unique NameCN185220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF12_ARATH (Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana GN=ERF012 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.688e-16
Identity = 39/62 (62.90%), Postives = 47/62 (75.81%), Query Frame = -3
Query:  300 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGA 485
            ++GVR R WGS+VSEIR P +KTRIWLGS+ +AE AARAYD A   LKG  A LNFP S+ +
Sbjct:   50 YKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDVALLCLKGPQANLNFPTSSSS 111          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF55_ARATH (Ethylene-responsive transcription factor ERF055 OS=Arabidopsis thaliana GN=ERF055 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.311e-15
Identity = 37/58 (63.79%), Postives = 48/58 (82.76%), Query Frame = -3
Query:  312 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPA 485
            +RGVR+R WG +V+EIRLP  +TR+WLG+F +AE+AA AYD AAF L+G+ A LNFPA
Sbjct:  143 YRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDRAAFKLRGDSARLNFPA 200          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF62_ARATH (Ethylene-responsive transcription factor ERF062 OS=Arabidopsis thaliana GN=ERF062 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.713e-15
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = -3
Query:  315 QNDTP---FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 500
            Q  TP   +RGVR+R WG +V+EIRLP  +TR+WLG+F +AE+AA AYD+AA+ L+G  A LNFP
Sbjct:  224 QTTTPTKLYRGVRQRHWGKWVAEIRLPRNRTRVWLGTFETAEQAAMAYDTAAYILRGEFAHLNFP 288          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: DRE1A_ARATH (Dehydration-responsive element-binding protein 1A OS=Arabidopsis thaliana GN=DREB1A PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.713e-15
Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = -3
Query:  261 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQ 485
            +RGVR+R  G +V E+R P +KTRIWLG+F +AE AARA+D AA  L+G  A LNF  SA  L  PES   KDIQ
Sbjct:   51 YRGVRRRNSGKWVCEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSACLNFADSAWRLRIPESTCAKDIQ 125          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.237e-15
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = -3
Query:  315 QNDTPFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 500
            + +  FRGVRKR WG Y +EIR PG+KTR+WLG+F +AE+AARAYD+AA   +G+ A  NFP
Sbjct:   28 RKEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFP 89          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF18_ARATH (Ethylene-responsive transcription factor ERF018 OS=Arabidopsis thaliana GN=ERF018 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.237e-15
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = -3
Query:  261 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQ 485
            ++GVRKR+WG +VSEIRLP  + RIWLGS+ + EKAARA+D+A F L+G  A  NFP +  ++   +S +  +IQ
Sbjct:   21 YKGVRKRKWGKWVSEIRLPHSRERIWLGSYDTPEKAARAFDAAQFCLRGGDANFNFPNNPPSISVEKSLTPPEIQ 95          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF08_ARATH (Ethylene-responsive transcription factor ERF008 OS=Arabidopsis thaliana GN=ERF008 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.237e-15
Identity = 34/58 (58.62%), Postives = 47/58 (81.03%), Query Frame = -3
Query:  315 PFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 488
            P++G+R R+WG +V+EIR P +++RIWLGS+ + E AARAYD+A FYL+G  A LNFP
Sbjct:   27 PYKGIRMRKWGKWVAEIREPNKRSRIWLGSYATPEAAARAYDTAVFYLRGPSARLNFP 84          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.921e-15
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = -3
Query:  288 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRP 485
            FRGVRKR WG + +EIR P +K R+WLG+F SAE+AARAYDSAA  L+G  A  NFP  + + P P
Sbjct:   28 FRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFPIDSSSPPPP 93          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF27_ARATH (Ethylene-responsive transcription factor ERF027 OS=Arabidopsis thaliana GN=ERF027 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.921e-15
Identity = 44/80 (55.00%), Postives = 53/80 (66.25%), Query Frame = -3
Query:  261 QNDTPFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQ 500
            + D  +RG+R R  G +VSEIR P + TRIWLG++  AE AA AYD AA  LKG  A LNFP S G+ P PES S  DI+
Sbjct:   14 RKDPVYRGIRCRS-GKWVSEIREPRKTTRIWLGTYPMAEMAAAAYDVAAMALKGREAVLNFPGSVGSYPVPESTSAADIR 92          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: RAP24_ARATH (Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 35/57 (61.40%), Postives = 47/57 (82.46%), Query Frame = -3
Query:  315 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 485
            +RGVR+R WG +V+EIRLP  +TR+WLG+F +AE+AA AYD AA+ L+G+ A LNFP
Sbjct:  152 YRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFP 208          
The following BLAST results are available for this feature:
BLAST of CN185220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
ERF12_ARATH7.688e-1662.90Ethylene-responsive transcription factor ERF012 OS... [more]
ERF55_ARATH1.311e-1563.79Ethylene-responsive transcription factor ERF055 OS... [more]
ERF62_ARATH1.713e-1558.46Ethylene-responsive transcription factor ERF062 OS... [more]
DRE1A_ARATH1.713e-1557.33Dehydration-responsive element-binding protein 1A ... [more]
ERF80_ARATH2.237e-1559.68Ethylene-responsive transcription factor 9 OS=Arab... [more]
ERF18_ARATH2.237e-1550.67Ethylene-responsive transcription factor ERF018 OS... [more]
ERF08_ARATH2.237e-1558.62Ethylene-responsive transcription factor ERF008 OS... [more]
ERF82_ARATH2.921e-1559.09Ethylene-responsive transcription factor 3 OS=Arab... [more]
ERF27_ARATH2.921e-1555.00Ethylene-responsive transcription factor ERF027 OS... [more]
RAP24_ARATH3.816e-1561.40Ethylene-responsive transcription factor RAP2-4 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P24_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185220 ID=CN185220; Name=CN185220; organism=Citrus sinensis; type=EST; length=574bp
GATTTTACACAAAAAAAAGTCCTTTACAATTCTAAACAAGACCCCAGTAG
AAAATTATCATCATCCATCCAACAATACAGCTCCCCAATGTCCGAGTCAA
ATCTGGGTGGACTCAGCAATGGCGCCACCTTCACTTCATCAGACGCCGTC
GTTTCCCTTTCCCACCAATCTCCACAGTCCGGTTCACCACCCGAACCGCT
GCATTCCGACTCAATCCGGTCGCCCATCTCTACAAGAGCCGCAGCTTTAG
CGGCTGCTACCTGTATGTCTTTCCTCGAACAAGACTCCGGTCGAGGAAGC
GCGCCGGCCGAGGCCGGAAAGTTAAGAGTCGCCAAGTTGCCTTTTAAATA
GAAAGCCGCAGAGTCATAAGCCCGAGCCGCCTTCTCGGCTGACCCAAATG
ACCCGAGCCATATCCGGGTCTTTTCACCTGGCAACCGTATCTCCGAAACG
TAGCTGCCCCACCTCCGTTTACGCACTCCCCGAAACGGCGTGTCGTTTTG
GCGTGTCCTTTTCTTTGAACCCGGTTTGGAGGTTGACGAACCGGGTTGAA
GTTGTGAAGGCTCTTGTGTTTGTG
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