CN185220

Overview
NameCN185220
Unique NameCN185220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF58_ARATH (Ethylene-responsive transcription factor ERF058 OS=Arabidopsis thaliana GN=ERF058 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 35/57 (61.40%), Postives = 47/57 (82.46%), Query Frame = -3
Query:  315 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 485
            +RGVR+R WG +V+EIRLP  +TR+WLG+F +AE+AA AYD AA+ L+G+ A LNFP
Sbjct:   83 YRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFP 139          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF13_ARATH (Ethylene-responsive transcription factor ERF013 OS=Arabidopsis thaliana GN=ERF013 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = -3
Query:  315 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 485
            ++GVR R WGS+V+EIR P +KTRIWLGS+ +AE AARAYD+A   LKG  A LNFP
Sbjct:   43 YKGVRMRSWGSWVTEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGPKANLNFP 99          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF60_ARATH (Ethylene-responsive transcription factor ERF060 OS=Arabidopsis thaliana GN=ERF060 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.508e-15
Identity = 35/57 (61.40%), Postives = 46/57 (80.70%), Query Frame = -3
Query:  315 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 485
            +RGVR+R WG +V+EIRLP  +TR+WLG+F +AE+AA AYD AA+ L+G  A LNFP
Sbjct:   93 YRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAAMAYDLAAYKLRGEFARLNFP 149          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF03_ARATH (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF003 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.508e-15
Identity = 41/68 (60.29%), Postives = 48/68 (70.59%), Query Frame = -3
Query:  282 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPES 485
            FRGVR+R WGS+VSEIR P  KTRIWLG+F +AE AARAYD AA  + G  A  NFP +  A+P   S
Sbjct:    8 FRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNAIPTSSS 75          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: DRE1C_ARATH (Dehydration-responsive element-binding protein 1C OS=Arabidopsis thaliana GN=DREB1C PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15
Identity = 42/75 (56.00%), Postives = 52/75 (69.33%), Query Frame = -3
Query:  261 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQ 485
            +RGVR+R  G +V E+R P +KTRIWLG+F +AE AARA+D AA  L+G  A LNF  SA  L  PES   K+IQ
Sbjct:   51 YRGVRQRNSGKWVCELREPNKKTRIWLGTFQTAEMAARAHDVAAIALRGRSACLNFADSAWRLRIPESTCAKEIQ 125          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: RAP29_ARATH (Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana GN=RAP2-9 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.110e-14
Identity = 34/61 (55.74%), Postives = 48/61 (78.69%), Query Frame = -3
Query:  315 NDTPFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 497
            N+  ++G+R R+WG +V+EIR P +++RIWLGS+ +A  AARAYD+A FYL+G  A LNFP
Sbjct:   32 NEKRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYKTAVAAARAYDTAVFYLRGPSARLNFP 92          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF14_ARATH (Ethylene-responsive transcription factor ERF014 OS=Arabidopsis thaliana GN=ERF014 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.450e-14
Identity = 39/64 (60.94%), Postives = 49/64 (76.56%), Query Frame = -3
Query:  297 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLA-TLNFPASAGAL 485
            ++GVR R WGS+VSEIR P +KTRIWLGS+ +AE AARAYD+A   LKG+ A  LNFP  + +L
Sbjct:   35 YKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANNLNFPEISTSL 98          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.450e-14
Identity = 40/73 (54.79%), Postives = 49/73 (67.12%), Query Frame = -3
Query:  270 FRGVRKRRWGSYVSEIRLPGEK-TRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRK 485
            +RGVR+R WG + +EIR P +K +RIWLG+F S   AARAYD AAF L+G  A LNFP  AG    P +  RK
Sbjct:  110 YRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPANSGRK 182          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.894e-14
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = -3
Query:  315 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 485
            +RGVRKR WG Y +EIR PG+KTR+WLG+F +AE+AARAYD+AA   +G  A  NFP
Sbjct:   25 YRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFP 81          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF57_ARATH (Ethylene-responsive transcription factor ERF057 OS=Arabidopsis thaliana GN=ERF057 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.473e-14
Identity = 56/163 (34.36%), Postives = 85/163 (52.15%), Query Frame = -3
Query:   42 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP-----------ASAGALPRPES-CSRKDIQVXXXXXXALVEMGDRIESECSGSG---GEPDCGDWWERETTASDEVKVAPLLSPPRFDSDIGELYCWMDDDNFLLG 485
            +RGVR+R+WG +V+EIRLP  +TR+WLG+F +A++AA AYD AA  ++G+ A LNFP            S     + ES C+  D+ +        +E  ++ E   SG      EP+ G+ +    + S       LL    F SD     C  +D++FL+G
Sbjct:  111 YRGVRQRQWGKWVAEIRLPKNRTRLWLGTFETAQEAALAYDQAAHKIRGDNARLNFPDIVRQGHYKQILSPSINAKIESICNSSDLPLPQ------IEKQNKTEEVLSGFSKPEKEPEFGEIYGCGYSGSSPESDITLLD---FSSD-----CVKEDESFLMG 259          
The following BLAST results are available for this feature:
BLAST of CN185220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
ERF58_ARATH3.816e-1561.40Ethylene-responsive transcription factor ERF058 OS... [more]
ERF13_ARATH3.816e-1564.91Ethylene-responsive transcription factor ERF013 OS... [more]
ERF60_ARATH6.508e-1561.40Ethylene-responsive transcription factor ERF060 OS... [more]
ERF03_ARATH6.508e-1560.29Ethylene-responsive transcription factor ERF003 OS... [more]
DRE1C_ARATH8.500e-1556.00Dehydration-responsive element-binding protein 1C ... [more]
RAP29_ARATH1.110e-1455.74Ethylene-responsive transcription factor RAP2-9 OS... [more]
ERF14_ARATH1.450e-1460.94Ethylene-responsive transcription factor ERF014 OS... [more]
EF106_ARATH1.450e-1454.79Ethylene-responsive transcription factor ERF106 OS... [more]
ERF78_ARATH1.894e-1463.16Ethylene-responsive transcription factor 4 OS=Arab... [more]
ERF57_ARATH2.473e-1434.36Ethylene-responsive transcription factor ERF057 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P24_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185220 ID=CN185220; Name=CN185220; organism=Citrus sinensis; type=EST; length=574bp
GATTTTACACAAAAAAAAGTCCTTTACAATTCTAAACAAGACCCCAGTAG
AAAATTATCATCATCCATCCAACAATACAGCTCCCCAATGTCCGAGTCAA
ATCTGGGTGGACTCAGCAATGGCGCCACCTTCACTTCATCAGACGCCGTC
GTTTCCCTTTCCCACCAATCTCCACAGTCCGGTTCACCACCCGAACCGCT
GCATTCCGACTCAATCCGGTCGCCCATCTCTACAAGAGCCGCAGCTTTAG
CGGCTGCTACCTGTATGTCTTTCCTCGAACAAGACTCCGGTCGAGGAAGC
GCGCCGGCCGAGGCCGGAAAGTTAAGAGTCGCCAAGTTGCCTTTTAAATA
GAAAGCCGCAGAGTCATAAGCCCGAGCCGCCTTCTCGGCTGACCCAAATG
ACCCGAGCCATATCCGGGTCTTTTCACCTGGCAACCGTATCTCCGAAACG
TAGCTGCCCCACCTCCGTTTACGCACTCCCCGAAACGGCGTGTCGTTTTG
GCGTGTCCTTTTCTTTGAACCCGGTTTGGAGGTTGACGAACCGGGTTGAA
GTTGTGAAGGCTCTTGTGTTTGTG
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