CN185220

Overview
NameCN185220
Unique NameCN185220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: WIN1_ARATH (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.734e-13
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = -3
Query:  315 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 485
            FRGVR+R WGS+V+EIR P  K RIWLG+F +AE+AARAYD AA  + G  A  NFP
Sbjct:    7 FRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFP 63          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.734e-13
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = -3
Query:  312 QNDTPFRGVRKRRWGSYVSEIRLPGEK-TRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPA 500
            + +  +RGVRKR WG + +EIR    K  R+WLG+F +AE AA AYD AAF LKG+LA LNFPA
Sbjct:   77 EEEKSYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFPA 140          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.734e-13
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = -3
Query:  282 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPES 485
            +RGVRKR WG Y +EIR P +KTR+WLG+F +A++AARAYD+AA   +G  A  NF    G+ P   S
Sbjct:   31 YRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNFGVIVGSSPTQSS 98          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.571e-13
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = -3
Query:  312 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPA 485
            +RGVRKR WG Y +EIR P +KTR+WLG+F + E+AA AYD AA +L+G  A  NFP+
Sbjct:   12 YRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFPS 69          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.664e-13
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = -3
Query:  270 FRGVRKRRWGSYVSEIRLPGEK-TRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGA-LPRPESCSRK 485
            +RGVR+R WG + +EIR P ++ +R+WLG+F +A +AARAYD AAF L+G+ A LNFP   G   PR +   +K
Sbjct:  156 YRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLEVGKWKPRADEGEKK 229          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ABI4_ARATH (Ethylene-responsive transcription factor ABI4 OS=Arabidopsis thaliana GN=ABI4 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 4.664e-13
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = -3
Query:  306 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASA 485
            +RGVR+R WG +V+EIR P ++TR WLG+F +AE AARAYD AA YL G+ A LN   S+
Sbjct:   55 YRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAVYLYGSRAQLNLTPSS 114          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.956e-13
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = -3
Query:  165 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQVXXXXXXALVEMGDRIESE-CSGSGGEPDCGDW 485
            +RGVR+R WG + +EIR P   TR+WLG+F +AE AARAYD AA   +G  A LNFP            +  DI        + V   D +E+E  +G GG+ +  +W
Sbjct:  136 YRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFPFVDYTSSVSSPVAADDIGAKASASAS-VSATDSVEAEQWNGGGGDCNMEEW 242          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = -3
Query:  315 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 485
            +RGVR+R WG + +EIR P +  R+WLG+F +AE+AA AYD AAF  +G+ A LNFP
Sbjct:   70 YRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFP 126          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12
Identity = 37/80 (46.25%), Postives = 51/80 (63.75%), Query Frame = -3
Query:  264 QNDTPFRGVRKRRWGSYVSEIRLPGEK-TRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDI 500
            + +  +RGVR+R WG Y +EIR P +K  RIWLG++ +A +A RAYD AAF L+G  A LNFP         E+CS + +
Sbjct:   83 EEERHYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFPLDVRV--TSETCSGEGV 160          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF95_ARATH (Ethylene-responsive transcription factor ERF095 OS=Arabidopsis thaliana GN=ERF095 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 35/62 (56.45%), Postives = 43/62 (69.35%), Query Frame = -3
Query:  315 NDTPFRGVRKRRWGSYVSEIRLPGEK-TRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 497
            N+  +RGVRKR WG Y +EIR       R+WLG+F +AE AARAYD AAF ++G  A LNFP
Sbjct:   10 NEMKYRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRAILNFP 71          
The following BLAST results are available for this feature:
BLAST of CN185220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
WIN1_ARATH2.734e-1363.16Ethylene-responsive transcription factor WIN1 OS=A... [more]
ERF94_ARATH2.734e-1357.81Ethylene-responsive transcription factor ERF094 OS... [more]
ERF79_ARATH2.734e-1352.94Ethylene-responsive transcription factor 8 OS=Arab... [more]
ERF81_ARATH3.571e-1358.62Ethylene-responsive transcription factor 12 OS=Ara... [more]
EF102_ARATH4.664e-1350.00Ethylene-responsive transcription factor 5 OS=Arab... [more]
ABI4_ARATH4.664e-1358.33Ethylene-responsive transcription factor ABI4 OS=A... [more]
EF109_ARATH7.956e-1339.81Ethylene-responsive transcription factor ERF109 OS... [more]
EF112_ARATH1.039e-1256.14Ethylene-responsive transcription factor ERF112 OS... [more]
EF104_ARATH1.039e-1246.25Ethylene-responsive transcription factor ERF104 OS... [more]
ERF95_ARATH1.357e-1256.45Ethylene-responsive transcription factor ERF095 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P24_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185220 ID=CN185220; Name=CN185220; organism=Citrus sinensis; type=EST; length=574bp
GATTTTACACAAAAAAAAGTCCTTTACAATTCTAAACAAGACCCCAGTAG
AAAATTATCATCATCCATCCAACAATACAGCTCCCCAATGTCCGAGTCAA
ATCTGGGTGGACTCAGCAATGGCGCCACCTTCACTTCATCAGACGCCGTC
GTTTCCCTTTCCCACCAATCTCCACAGTCCGGTTCACCACCCGAACCGCT
GCATTCCGACTCAATCCGGTCGCCCATCTCTACAAGAGCCGCAGCTTTAG
CGGCTGCTACCTGTATGTCTTTCCTCGAACAAGACTCCGGTCGAGGAAGC
GCGCCGGCCGAGGCCGGAAAGTTAAGAGTCGCCAAGTTGCCTTTTAAATA
GAAAGCCGCAGAGTCATAAGCCCGAGCCGCCTTCTCGGCTGACCCAAATG
ACCCGAGCCATATCCGGGTCTTTTCACCTGGCAACCGTATCTCCGAAACG
TAGCTGCCCCACCTCCGTTTACGCACTCCCCGAAACGGCGTGTCGTTTTG
GCGTGTCCTTTTCTTTGAACCCGGTTTGGAGGTTGACGAACCGGGTTGAA
GTTGTGAAGGCTCTTGTGTTTGTG
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