CN185220

Overview
NameCN185220
Unique NameCN185220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.772e-12
Identity = 32/57 (56.14%), Postives = 45/57 (78.95%), Query Frame = -3
Query:  315 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 485
            +RG+R+R WG + +EIR P E  RIWLG+F +AE+AARAYD+AA  ++G+ A +NFP
Sbjct:  125 YRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFP 181          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.772e-12
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = -3
Query:  315 NDTPFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 497
            N   +RGVRKR WG Y +EIR P +K+R+WLG+F + E+AARAYD  A   +G  A  NFP
Sbjct:   16 NGVRYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP 76          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: DRE2A_ARATH (Dehydration-responsive element-binding protein 2A OS=Arabidopsis thaliana GN=DREB2A PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.315e-12
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = -3
Query:  309 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPAS 485
            FRGVR+R WG +V+EIR P   +R+WLG+F +A++AA AYD AA  + G LA LNFP S
Sbjct:   79 FRGVRQRIWGKWVAEIREPNRGSRLWLGTFPTAQEAASAYDEAAKAMYGPLARLNFPRS 137          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: DRE1F_ARATH (Dehydration-responsive element-binding protein 1F OS=Arabidopsis thaliana GN=DREB1F PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.315e-12
Identity = 55/155 (35.48%), Postives = 72/155 (46.45%), Query Frame = -3
Query:  102 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQVXXXXXXALVEM----------------GDRIE-----SECSGSGGEP------DCGDWWERETTASDEVKVAPLLSPPR 485
            +RG+R+R    +V E+R P  + RIWLG++ +A+ AARA+D A   L+G  A LNF  SA  LP PES    D  V         EM                GD ++        SGSG E         GD+ E  TT    +   PL+SPPR
Sbjct:   30 YRGIRRRNGDKWVCEVREPTHQRRIWLGTYPTADMAARAHDVAVLALRGRSACLNFADSAWRLPVPES---NDPDVIRRVAAEAAEMFRPVDLESGITVLPCAGDDVDLGFGSGSGSGSGSEERNSSSYGFGDYEEVSTTMM-RLAEGPLMSPPR 180          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.023e-12
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = -3
Query:  315 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 485
            +RGVRKR WG + +EIR P +K+R+WLG+F SA  AARAYD+AA  L+G  A  NFP
Sbjct:   27 YRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFP 83          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: DRE2F_ARATH (Dehydration-responsive element-binding protein 2F OS=Arabidopsis thaliana GN=DREB2F PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.023e-12
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = -3
Query:  315 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 485
            +RGVR+R WG +V+EIR P ++ R+WLGSF +AE+AA AYD AA  L G+ A LN P
Sbjct:   28 YRGVRQRTWGKWVAEIREPKKRARLWLGSFATAEEAAMAYDEAALKLYGHDAYLNLP 84          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.023e-12
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = -3
Query:  315 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 485
            FRGVR+R WG + +EIR P  + R+WLG+F +AE+AA  YD+AA  L+G  A LNFP
Sbjct:   87 FRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFP 143          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF93_ARATH (Ethylene-responsive transcription factor 15 OS=Arabidopsis thaliana GN=ERF15 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = -3
Query:  315 FRGVRKRRWGSYVSEIRLPGEK-TRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 485
            +RGVRKR WG + +EIR       R+WLG+F  AE+AA AYD AAF  KG+LATLNFP
Sbjct:   86 YRGVRKRPWGKFAAEIRDSTRNGIRVWLGTFDKAEEAALAYDQAAFATKGSLATLNFP 143          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 33/58 (56.90%), Postives = 45/58 (77.59%), Query Frame = -3
Query:  315 FRGVRKRRWGSYVSEIRLPGEK-TRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 485
            +RGVR+R WG + +EIR P  K TR+WLG+F +A +AA+AYD AAF L+G+ A +NFP
Sbjct:  145 YRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNFP 202          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = -3
Query:  315 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 485
            FRG+R+R WG + +EIR P +  R+WLG+F SAE+AARAYD+ A  ++G  A +NFP
Sbjct:  120 FRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFP 176          
The following BLAST results are available for this feature:
BLAST of CN185220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
RA212_ARATH1.772e-1256.14Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF76_ARATH1.772e-1254.10Ethylene-responsive transcription factor 11 OS=Ara... [more]
DRE2A_ARATH2.315e-1257.63Dehydration-responsive element-binding protein 2A ... [more]
DRE1F_ARATH2.315e-1235.48Dehydration-responsive element-binding protein 1F ... [more]
ERF83_ARATH3.023e-1259.65Ethylene-responsive transcription factor 7 OS=Arab... [more]
DRE2F_ARATH3.023e-1257.89Dehydration-responsive element-binding protein 2F ... [more]
CRF1_ARATH3.023e-1256.14Ethylene-responsive transcription factor CRF1 OS=A... [more]
ERF93_ARATH3.949e-1260.34Ethylene-responsive transcription factor 15 OS=Ara... [more]
ERF5_TOBAC3.949e-1256.90Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF1_ORYSJ3.949e-1254.39Ethylene-responsive transcription factor 1 OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P24_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185220 ID=CN185220; Name=CN185220; organism=Citrus sinensis; type=EST; length=574bp
GATTTTACACAAAAAAAAGTCCTTTACAATTCTAAACAAGACCCCAGTAG
AAAATTATCATCATCCATCCAACAATACAGCTCCCCAATGTCCGAGTCAA
ATCTGGGTGGACTCAGCAATGGCGCCACCTTCACTTCATCAGACGCCGTC
GTTTCCCTTTCCCACCAATCTCCACAGTCCGGTTCACCACCCGAACCGCT
GCATTCCGACTCAATCCGGTCGCCCATCTCTACAAGAGCCGCAGCTTTAG
CGGCTGCTACCTGTATGTCTTTCCTCGAACAAGACTCCGGTCGAGGAAGC
GCGCCGGCCGAGGCCGGAAAGTTAAGAGTCGCCAAGTTGCCTTTTAAATA
GAAAGCCGCAGAGTCATAAGCCCGAGCCGCCTTCTCGGCTGACCCAAATG
ACCCGAGCCATATCCGGGTCTTTTCACCTGGCAACCGTATCTCCGAAACG
TAGCTGCCCCACCTCCGTTTACGCACTCCCCGAAACGGCGTGTCGTTTTG
GCGTGTCCTTTTCTTTGAACCCGGTTTGGAGGTTGACGAACCGGGTTGAA
GTTGTGAAGGCTCTTGTGTTTGTG
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