CN185220

Overview
NameCN185220
Unique NameCN185220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = -3
Query:  306 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASA 485
            +RGVR+R WG + +EIR P +  R+WLG+F +AE AA AYD+AA   KG+ A LNFP  A
Sbjct:   92 YRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFPERA 151          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: CRF6_ARATH (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = -3
Query:  318 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNF 485
            +RGVR+R WG + +EIR P  +TRIWLG+F +AE+AA AYD AA +LKG  A  NF
Sbjct:  105 YRGVRQRPWGKFAAEIRDPSSRTRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNF 160          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.157e-12
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = -3
Query:  315 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 485
            +RG+RKR WG + +EIR P +  R+WLG+F +AE+AA AYD AA  ++G+ A LNFP
Sbjct:   79 YRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFP 135          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.157e-12
Identity = 30/57 (52.63%), Postives = 43/57 (75.44%), Query Frame = -3
Query:  315 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 485
            +RG+R+R WG + +EIR P +  R+WLG+F +A++AARAYD AA  ++G  A LNFP
Sbjct:   50 YRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFP 106          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF19_ARATH (Ethylene-responsive transcription factor ERF019 OS=Arabidopsis thaliana GN=ERF019 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.157e-12
Identity = 47/129 (36.43%), Postives = 70/129 (54.26%), Query Frame = -3
Query:  129 QNDTPFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYL--KGNLATLNFPASAGALPRPESCSR---KDIQVXXXXXXALVEMGDRIESECSGSGGEPDCGDWWERETTASDEVK 500
            ++ + ++G+R+R+WG +VSEIR+PG + R+WLGSF +AE AA A+D A F L    +L +LNFP     L  P   SR   + IQ         ++ G  + S    SG    CGD        +D+V+
Sbjct:    9 ESQSKYKGIRRRKWGKWVSEIRVPGTRDRLWLGSFSTAEGAAVAHDVAFFCLHQPDSLESLNFP----HLLNPSLVSRTSPRSIQQAASNAGMAIDAG-IVHSTSVNSG----CGDTTTYYENGADQVE 128          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.735e-12
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = -3
Query:  315 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 485
            +RGVR+R WG + +EIR P +  R+WLG+F +AE AA AYD AA   KG+ A LNFP
Sbjct:   90 YRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFP 146          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.735e-12
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = -3
Query:  267 QNDTPFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKD 500
            QN   +RGVR+R WG + +EIR P ++ RIWLG+F +AE+AA  YD+AA  L+G  A  NF       P PE    ++
Sbjct:  112 QNQKKYRGVRQRPWGKWAAEIRDPEQRRRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNFTVQ----PEPEPVQEQE 185          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.796e-12
Identity = 32/58 (55.17%), Postives = 45/58 (77.59%), Query Frame = -3
Query:  315 FRGVRKRRWGSYVSEIRLPGEK-TRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 485
            +RGVR+R WG + +EIR P  K TR+WLG+F +A +AA+AYD AA+ L+G+ A +NFP
Sbjct:  138 YRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNFP 195          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.796e-12
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = -3
Query:  315 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 485
            +RGVR+R WG + +EIR P +  R+WLG+F +AE+AA AYD AA   KG  A LNFP
Sbjct:   39 YRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFP 95          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: PZ02_LUPPO (Protein PPLZ02 OS=Lupinus polyphyllus GN=PPLZ02 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.149e-11
Identity = 36/62 (58.06%), Postives = 42/62 (67.74%), Query Frame = -3
Query:  300 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGA 485
            +RG R+R WGS+VSEIR    KTRIW G+F SAE AARAYD AA  + G  A  NFP +  A
Sbjct:    8 YRGFRQRHWGSWVSEIRHSILKTRIWQGTFESAEDAARAYDEAARLMCGTRARTNFPYNPNA 69          
The following BLAST results are available for this feature:
BLAST of CN185220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
EF115_ARATH3.949e-1255.00Ethylene-responsive transcription factor ERF115 OS... [more]
CRF6_ARATH3.949e-1258.93Ethylene-responsive transcription factor CRF6 OS=A... [more]
RAP23_ARATH5.157e-1254.39Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF71_ARATH5.157e-1252.63Ethylene-responsive transcription factor ERF071 OS... [more]
ERF19_ARATH5.157e-1236.43Ethylene-responsive transcription factor ERF019 OS... [more]
EF114_ARATH6.735e-1256.14Ethylene-responsive transcription factor ERF114 OS... [more]
CRF4_ARATH6.735e-1244.87Ethylene-responsive transcription factor CRF4 OS=A... [more]
ERF5_NICSY8.796e-1255.17Ethylene-responsive transcription factor 5 OS=Nico... [more]
EF113_ARATH8.796e-1256.14Ethylene-responsive transcription factor ERF113 OS... [more]
PZ02_LUPPO1.149e-1158.06Protein PPLZ02 OS=Lupinus polyphyllus GN=PPLZ02 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P24_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185220 ID=CN185220; Name=CN185220; organism=Citrus sinensis; type=EST; length=574bp
GATTTTACACAAAAAAAAGTCCTTTACAATTCTAAACAAGACCCCAGTAG
AAAATTATCATCATCCATCCAACAATACAGCTCCCCAATGTCCGAGTCAA
ATCTGGGTGGACTCAGCAATGGCGCCACCTTCACTTCATCAGACGCCGTC
GTTTCCCTTTCCCACCAATCTCCACAGTCCGGTTCACCACCCGAACCGCT
GCATTCCGACTCAATCCGGTCGCCCATCTCTACAAGAGCCGCAGCTTTAG
CGGCTGCTACCTGTATGTCTTTCCTCGAACAAGACTCCGGTCGAGGAAGC
GCGCCGGCCGAGGCCGGAAAGTTAAGAGTCGCCAAGTTGCCTTTTAAATA
GAAAGCCGCAGAGTCATAAGCCCGAGCCGCCTTCTCGGCTGACCCAAATG
ACCCGAGCCATATCCGGGTCTTTTCACCTGGCAACCGTATCTCCGAAACG
TAGCTGCCCCACCTCCGTTTACGCACTCCCCGAAACGGCGTGTCGTTTTG
GCGTGTCCTTTTCTTTGAACCCGGTTTGGAGGTTGACGAACCGGGTTGAA
GTTGTGAAGGCTCTTGTGTTTGTG
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