CN185220

Overview
NameCN185220
Unique NameCN185220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.149e-11
Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = -3
Query:  204 QNDTPFRGVRKRRWGSYVSEIRLPGEK-TRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQVXXXXXXALVEMGDRIESE 500
            Q    +RGVR+R WG + +EIR P +   R+WLG++ + E AA AYD AAF L+G+ A LNFP   G      SC  + +++          + D++ SE
Sbjct:   87 QKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPHLIG------SCKYEPVRIRPRRRSPEPSVSDQLTSE 180          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF26_ARATH (Ethylene-responsive transcription factor ERF026 OS=Arabidopsis thaliana GN=ERF026 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.500e-11
Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = -3
Query:  261 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQ 485
            +RG+R R  G +VSEIR P + TR+WLG++ + E AA AYD AA  LKG    LNFP S G+ P P S S   I+
Sbjct:   90 YRGIRCRS-GKWVSEIREPKKTTRVWLGTYPTPEMAAAAYDVAALALKGGDTLLNFPDSLGSYPIPLSSSAAHIR 163          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.500e-11
Identity = 51/132 (38.64%), Postives = 66/132 (50.00%), Query Frame = -3
Query:  105 FRGVRKRRWGSYVSEIRLPGEK-TRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGAL-PRPE---SCSRKDIQVXXXXXXALVEMGDRIESECSGSGGEPDCGDWWERETTASDEVKVAPLLSPP 485
            +RGVR R WG + +EIR P  + TR+WLG+F +A +AARAYD  AF L+G+ A LNFP       PR E       K  +        +VE   + E     SGGE       E   TA D+  +   LS P
Sbjct:  137 YRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLEVDKWNPRAEDGRGLYNKRKRDGEEEEVTVVEKVLKTEESYDVSGGEN-----VESGLTAIDDWDLTEFLSMP 263          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: DRE1B_ORYSJ (Dehydration-responsive element-binding protein 1B OS=Oryza sativa subsp. japonica GN=DREB1B PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.500e-11
Identity = 56/155 (36.13%), Postives = 76/155 (49.03%), Query Frame = -3
Query:   42 FRGVRKRRW-----GSYVSEIRLPGEK-TRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPR-PESCSRKDIQVXXXXXXALVEMGDRIESECSGSGGEPDCGDWWERETTASDEVKVAPLLSPPRFDSDIGELYCWMDDDNFLLG 485
            +RGVR+R       G +V E+R+PG + +R+WLG+F +AE AARA+D+AA  L+G  A LNF  SA  +P  P S +    +         VE   R +S    S  E    D  E E    D   V P+ +   FD+   EL     DD F  G
Sbjct:   33 YRGVRRRGGRPGAAGRWVCEVRVPGARGSRLWLGTFATAEAAARAHDAAALALRGRAACLNFADSAWRMPPVPASAALAGARGVRDAVAVAVEAFQR-QSAAPSSPAETFANDGDEEE----DNKDVLPVAAAEVFDAGAFEL-----DDGFRFG 177          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF96_ARATH (Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana GN=ERF096 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.960e-11
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = -3
Query:  315 FRGVRKRRWGSYVSEIRLPGEK-TRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 485
            +RGVR+R WG Y +EIR   +   R+WLG+F +AE+AARAYD AA+ ++G  A LNFP
Sbjct:   15 YRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYDQAAYSMRGQAAILNFP 72          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.960e-11
Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = -3
Query:  285 FRGVRKRRWGSYVSEIRLPGEK-TRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPE 485
            +RGVR+R WG + +EIR P +   R+WLG++ +AE+AA AYD AA+ ++G+ A LNFP   G L  PE
Sbjct:   99 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIG-LNEPE 165          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.960e-11
Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = -3
Query:  285 FRGVRKRRWGSYVSEIRLPGEK-TRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPE 485
            +RGVR+R WG + +EIR P +   R+WLG++ +AE+AA AYD AA+ ++G+ A LNFP   G L  PE
Sbjct:  103 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIG-LNEPE 169          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: DRE1B_ORYSI (Dehydration-responsive element-binding protein 1B OS=Oryza sativa subsp. indica GN=DREB1B PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.960e-11
Identity = 56/155 (36.13%), Postives = 76/155 (49.03%), Query Frame = -3
Query:   42 FRGVRKRRW-----GSYVSEIRLPGEK-TRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPR-PESCSRKDIQVXXXXXXALVEMGDRIESECSGSGGEPDCGDWWERETTASDEVKVAPLLSPPRFDSDIGELYCWMDDDNFLLG 485
            +RGVR+R       G +V E+R+PG + +R+WLG+F +AE AARA+D+AA  L+G  A LNF  SA  +P  P S +    +         VE   R +S    S  E    D  E E    D   V P+ +   FD+   EL     DD F  G
Sbjct:   33 YRGVRRRGGRPGAAGRWVCEVRVPGARGSRLWLGTFATAEAAARAHDAAALALRGRAACLNFADSAWRMPPVPASAALAGARGVRDAVAVAVEAFQR-QSAAPSSPAETFADDGDEEE----DNKDVLPVAAAEVFDAGAFEL-----DDGFRFG 177          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.559e-11
Identity = 30/57 (52.63%), Postives = 44/57 (77.19%), Query Frame = -3
Query:  315 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 485
            +RG+R+R WG + +EIR P + +R WLG+F +AE+AARAYD+AA  ++G  A +NFP
Sbjct:  128 YRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFP 184          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.559e-11
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = -3
Query:  315 FRGVRKRRWGSYVSEIRLPGEK-TRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 485
            +RGVR+R WG + +EIR P +   R+WLG+F +AE AA AYD AAF ++G+ A LNFP
Sbjct:  148 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 205          
The following BLAST results are available for this feature:
BLAST of CN185220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
ERF99_ARATH1.149e-1138.00Ethylene-responsive transcription factor 13 OS=Ara... [more]
ERF26_ARATH1.500e-1150.67Ethylene-responsive transcription factor ERF026 OS... [more]
EF103_ARATH1.500e-1138.64Ethylene-responsive transcription factor 6 OS=Arab... [more]
DRE1B_ORYSJ1.500e-1136.13Dehydration-responsive element-binding protein 1B ... [more]
ERF96_ARATH1.960e-1155.17Ethylene-responsive transcription factor ERF096 OS... [more]
ERF2_TOBAC1.960e-1150.00Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF2_NICSY1.960e-1150.00Ethylene-responsive transcription factor 2 OS=Nico... [more]
DRE1B_ORYSI1.960e-1136.13Dehydration-responsive element-binding protein 1B ... [more]
RAP22_ARATH2.559e-1152.63Ethylene-responsive transcription factor RAP2-2 OS... [more]
EF100_ARATH2.559e-1155.17Ethylene-responsive transcription factor 1A OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P24_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185220 ID=CN185220; Name=CN185220; organism=Citrus sinensis; type=EST; length=574bp
GATTTTACACAAAAAAAAGTCCTTTACAATTCTAAACAAGACCCCAGTAG
AAAATTATCATCATCCATCCAACAATACAGCTCCCCAATGTCCGAGTCAA
ATCTGGGTGGACTCAGCAATGGCGCCACCTTCACTTCATCAGACGCCGTC
GTTTCCCTTTCCCACCAATCTCCACAGTCCGGTTCACCACCCGAACCGCT
GCATTCCGACTCAATCCGGTCGCCCATCTCTACAAGAGCCGCAGCTTTAG
CGGCTGCTACCTGTATGTCTTTCCTCGAACAAGACTCCGGTCGAGGAAGC
GCGCCGGCCGAGGCCGGAAAGTTAAGAGTCGCCAAGTTGCCTTTTAAATA
GAAAGCCGCAGAGTCATAAGCCCGAGCCGCCTTCTCGGCTGACCCAAATG
ACCCGAGCCATATCCGGGTCTTTTCACCTGGCAACCGTATCTCCGAAACG
TAGCTGCCCCACCTCCGTTTACGCACTCCCCGAAACGGCGTGTCGTTTTG
GCGTGTCCTTTTCTTTGAACCCGGTTTGGAGGTTGACGAACCGGGTTGAA
GTTGTGAAGGCTCTTGTGTTTGTG
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