CN185217

Overview
NameCN185217
Unique NameCN185217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length268
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185217 vs. ExPASy Swiss-Prot
Match: CADH7_ORYSJ (Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa subsp. japonica GN=CAD7 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.218e-17
Identity = 39/64 (60.94%), Postives = 49/64 (76.56%), Query Frame = 3
Query:   75 ETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKSLEINVSKFKEGDKVGV 266
            +TG DDV IK+L+CGICHSDLH  +NEW    YP+V GHEI G VT+ +  NV++FK GD+VGV
Sbjct:   44 KTGDDDVAIKVLYCGICHSDLHTIKNEWRNAVYPVVAGHEITGVVTE-VGKNVARFKAGDEVGV 106          
BLAST of CN185217 vs. ExPASy Swiss-Prot
Match: MTDH_APIGR (Mannitol dehydrogenase OS=Apium graveolens GN=MTD PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.682e-16
Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = 3
Query:   78 TGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKSLEINVSKFKEGDKVGV 266
            TG  DV +K+LFCG+CHSD H   N WG T YPIVPGHEIVG VT+ +   V K K GD VG+
Sbjct:   35 TGEKDVRLKVLFCGVCHSDHHMIHNNWGFTTYPIVPGHEIVGVVTE-VGSKVEKVKVGDNVGI 96          
BLAST of CN185217 vs. ExPASy Swiss-Prot
Match: CADH1_TOBAC (Probable cinnamyl alcohol dehydrogenase 1 OS=Nicotiana tabacum GN=CAD14 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.682e-16
Identity = 36/63 (57.14%), Postives = 51/63 (80.95%), Query Frame = 3
Query:   78 TGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKSLEINVSKFKEGDKVGV 266
            TG +DV +K+L+CG+CH+DLH  +N+ G++NYP+VPGHE+VG V + +  +VSKFK GD VGV
Sbjct:   32 TGPEDVEVKVLYCGLCHTDLHQVKNDLGMSNYPLVPGHEVVGEVVE-VGPDVSKFKVGDTVGV 93          
BLAST of CN185217 vs. ExPASy Swiss-Prot
Match: CADH9_ORYSJ (Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza sativa subsp. japonica GN=CAD9 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.331e-15
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 3
Query:   81 GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKSLEINVSKFKEGDKVGV 266
            G +DV +KILFCGICHSDL   +NEWG   YP+VPGHEIVG V + +  +V++F  GD VGV
Sbjct:   31 GDEDVVVKILFCGICHSDLSTIKNEWGNAKYPVVPGHEIVGVVAE-VGSSVARFAAGDTVGV 91          
BLAST of CN185217 vs. ExPASy Swiss-Prot
Match: CADH_MEDSA (Probable cinnamyl alcohol dehydrogenase OS=Medicago sativa GN=CAD2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.738e-15
Identity = 37/63 (58.73%), Postives = 50/63 (79.37%), Query Frame = 3
Query:   78 TGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKSLEINVSKFKEGDKVGV 266
            TG DDV IKI +CG+CHSDLH  +N+ G++NYP+VPGHE+VG V + +  NV++FK G+ VGV
Sbjct:   33 TGPDDVYIKIHYCGVCHSDLHQIKNDLGMSNYPMVPGHEVVGEVLE-VGSNVTRFKVGEIVGV 94          
BLAST of CN185217 vs. ExPASy Swiss-Prot
Match: CADH4_ARATH (Cinnamyl alcohol dehydrogenase 4 OS=Arabidopsis thaliana GN=CAD4 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.738e-15
Identity = 37/63 (58.73%), Postives = 50/63 (79.37%), Query Frame = 3
Query:   78 TGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKSLEINVSKFKEGDKVGV 266
            TGADDV IK++ CGICH+D+H  +N+ G++NYP+VPGHE+VG V + +  +VSKF  GD VGV
Sbjct:   33 TGADDVYIKVICCGICHTDIHQIKNDLGMSNYPMVPGHEVVGEVLE-VGSDVSKFTVGDVVGV 94          
BLAST of CN185217 vs. ExPASy Swiss-Prot
Match: CADH1_ARACO (Probable cinnamyl alcohol dehydrogenase 1 OS=Aralia cordata GN=CAD1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.738e-15
Identity = 36/63 (57.14%), Postives = 50/63 (79.37%), Query Frame = 3
Query:   75 ETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKSLEINVSKFKEGDKVG 263
            ETG +DV IKI++CGICH+D+H  +N+ G +NYP+VPGHE+VG V + +  +V+KFK GD VG
Sbjct:   31 ETGPEDVFIKIIYCGICHTDIHQIKNDLGASNYPMVPGHEVVGEVVE-VGSDVTKFKVGDCVG 92          
BLAST of CN185217 vs. ExPASy Swiss-Prot
Match: CADH5_ARATH (Cinnamyl alcohol dehydrogenase 5 OS=Arabidopsis thaliana GN=CAD5 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.270e-15
Identity = 37/64 (57.81%), Postives = 50/64 (78.12%), Query Frame = 3
Query:   75 ETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKSLEINVSKFKEGDKVGV 266
            ETG +DV I+I+ CGICH+DLH  +N+ G++NYP+VPGHE+VG V + +  +VSKF  GD VGV
Sbjct:   31 ETGPEDVNIRIICCGICHTDLHQTKNDLGMSNYPMVPGHEVVGEVVE-VGSDVSKFTVGDIVGV 93          
BLAST of CN185217 vs. ExPASy Swiss-Prot
Match: ADHC_MYCTU (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium tuberculosis GN=adhC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.606e-15
Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = 3
Query:   75 ETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKSLEINVSKFKEGDKVGV 266
            + G  DV I I F GICHSD+H  + EWG  NYP+VPGHEI G VT ++   V+K+++GD+VGV
Sbjct:   25 DPGPHDVAIDIKFAGICHSDIHTVKAEWGQPNYPVVPGHEIAGVVT-AVGSEVTKYRQGDRVGV 87          
BLAST of CN185217 vs. ExPASy Swiss-Prot
Match: ADHC_MYCBO (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium bovis GN=adhC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.606e-15
Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = 3
Query:   75 ETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKSLEINVSKFKEGDKVGV 266
            + G  DV I I F GICHSD+H  + EWG  NYP+VPGHEI G VT ++   V+K+++GD+VGV
Sbjct:   25 DPGPHDVAIDIKFAGICHSDIHTVKAEWGQPNYPVVPGHEIAGVVT-AVGSEVTKYRQGDRVGV 87          
The following BLAST results are available for this feature:
BLAST of CN185217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CADH7_ORYSJ9.218e-1760.94Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa s... [more]
MTDH_APIGR2.682e-1660.32Mannitol dehydrogenase OS=Apium graveolens GN=MTD ... [more]
CADH1_TOBAC2.682e-1657.14Probable cinnamyl alcohol dehydrogenase 1 OS=Nicot... [more]
CADH9_ORYSJ1.331e-1559.68Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza... [more]
CADH_MEDSA1.738e-1558.73Probable cinnamyl alcohol dehydrogenase OS=Medicag... [more]
CADH4_ARATH1.738e-1558.73Cinnamyl alcohol dehydrogenase 4 OS=Arabidopsis th... [more]
CADH1_ARACO1.738e-1557.14Probable cinnamyl alcohol dehydrogenase 1 OS=Arali... [more]
CADH5_ARATH2.270e-1557.81Cinnamyl alcohol dehydrogenase 5 OS=Arabidopsis th... [more]
ADHC_MYCTU6.606e-1554.69NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]
ADHC_MYCBO6.606e-1554.69NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P23_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185217 ID=CN185217; Name=CN185217; organism=Citrus sinensis; type=EST; length=268bp
ATTCGTATTATTTTATTTGTTTATGTACTTTTTGTCACTCTGCTTGGTTG
AACTGGCGAAACTTATATGTTTGAGAAACTGGTGCTGATGATGTAACTAT
TAAGATCCTCTTTTGTGGGATTTGCCACTCGGACTTGCATTGTGCCAGAA
ATGAATGGGGTGTCACCAATTACCCAATTGTTCCCGGGCATGAAATTGTT
GGTACTGTGACAAAAAGTTTGGAAATAAACGTGTCAAAATTCAAAGAGGG
TGACAAGGTTGGAGTTGG
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