CN185217

Overview
NameCN185217
Unique NameCN185217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length268
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185217 vs. ExPASy Swiss-Prot
Match: YAHK_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein yahK OS=Escherichia coli (strain K12) GN=yahK PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.539e-14
Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 3
Query:   75 ETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKSLEINVSKFKEGDKVGV 266
            E G +DV I+I +CG+CHSDLH  R+EW  T YP VPGHEIVG V  ++   V K+  GD VGV
Sbjct:   24 EPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVV-AVGDQVEKYAPGDLVGV 86          
BLAST of CN185217 vs. ExPASy Swiss-Prot
Match: CADH_EUCGL (Probable cinnamyl alcohol dehydrogenase OS=Eucalyptus globulus GN=CAD PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.246e-13
Identity = 32/62 (51.61%), Postives = 49/62 (79.03%), Query Frame = 3
Query:   78 TGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKSLEINVSKFKEGDKVG 263
            TG +D+ IK+L CGICHSD+H  +N+ G+++YP+VPGHE+VG V + +   V+K++ GD+VG
Sbjct:   32 TGPEDLYIKVLSCGICHSDIHQIKNDLGMSHYPMVPGHEVVGEVLE-VGSEVTKYRVGDRVG 92          
BLAST of CN185217 vs. ExPASy Swiss-Prot
Match: CADH_EUCBO (Probable cinnamyl alcohol dehydrogenase OS=Eucalyptus botryoides GN=CAD1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.246e-13
Identity = 32/62 (51.61%), Postives = 49/62 (79.03%), Query Frame = 3
Query:   78 TGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKSLEINVSKFKEGDKVG 263
            TG +D+ IK+L CGICHSD+H  +N+ G+++YP+VPGHE+VG V + +   V+K++ GD+VG
Sbjct:   32 TGPEDLYIKVLSCGICHSDIHQIKNDLGMSHYPMVPGHEVVGEVLE-VGSEVTKYRVGDRVG 92          
BLAST of CN185217 vs. ExPASy Swiss-Prot
Match: CADH1_OCIBA (Cinnamyl alcohol dehydrogenase 1 OS=Ocimum basilicum GN=CAD1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.246e-13
Identity = 32/63 (50.79%), Postives = 48/63 (76.19%), Query Frame = 3
Query:   78 TGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKSLEINVSKFKEGDKVGV 266
            TG  DV ++++ CGICH+D+H  +N+ G++NYP+VPGHE+VG V + +   V+KF+ GD VGV
Sbjct:   32 TGPQDVYVEVMCCGICHTDVHQIKNDLGMSNYPMVPGHEVVGEVVE-VGSEVTKFRAGDVVGV 93          
BLAST of CN185217 vs. ExPASy Swiss-Prot
Match: CADH1_EUCGU (Probable cinnamyl alcohol dehydrogenase 1 OS=Eucalyptus gunnii GN=CAD1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.246e-13
Identity = 32/62 (51.61%), Postives = 49/62 (79.03%), Query Frame = 3
Query:   78 TGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKSLEINVSKFKEGDKVG 263
            TG +D+ IK+L CGICHSD+H  +N+ G+++YP+VPGHE+VG V + +   V+K++ GD+VG
Sbjct:   32 TGPEDLYIKVLSCGICHSDIHQIKNDLGMSHYPMVPGHEVVGEVLE-VGSEVTKYRVGDRVG 92          
BLAST of CN185217 vs. ExPASy Swiss-Prot
Match: CADH2_EUCGU (Probable cinnamyl alcohol dehydrogenase 2 OS=Eucalyptus gunnii GN=CAD2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.627e-13
Identity = 31/62 (50.00%), Postives = 49/62 (79.03%), Query Frame = 3
Query:   78 TGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKSLEINVSKFKEGDKVG 263
            TG +D+ IK+L CG+CHSD+H  +N+ G+++YP+VPGHE+VG V + +   V+K++ GD+VG
Sbjct:   32 TGPEDLYIKVLSCGVCHSDIHQIKNDLGMSHYPMVPGHEVVGEVLE-VGSEVTKYRVGDRVG 92          
BLAST of CN185217 vs. ExPASy Swiss-Prot
Match: CADH1_ARATH (Probable cinnamyl alcohol dehydrogenase 1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.928e-12
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 3
Query:   87 DDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKSLEINVSKFKEGDKVGV 266
            DDV++ I  CG+C++D+  +RN+ G + YP+VPGHEI G VTK +  NV +FK GD VGV
Sbjct:   36 DDVSLTITHCGVCYADVIWSRNQHGDSKYPLVPGHEIAGIVTK-VGPNVQRFKVGDHVGV 94          
BLAST of CN185217 vs. ExPASy Swiss-Prot
Match: ADHA_BACSU (Probable formaldehyde dehydrogenase adhA OS=Bacillus subtilis GN=adhA PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.598e-11
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 3
Query:   90 DVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKSLEINVSKFKEGDKVGV 266
            DV I I F GICHSD+H A +EWG   +P+VPGHEI G VT ++   V+K   GD+VGV
Sbjct:   33 DVLIDIKFSGICHSDIHSAFDEWGGGIFPMVPGHEIAGVVT-AVGTKVTKLAVGDRVGV 90          
The following BLAST results are available for this feature:
BLAST of CN185217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
YAHK_ECOLI9.539e-1456.25Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
CADH_EUCGL1.246e-1351.61Probable cinnamyl alcohol dehydrogenase OS=Eucalyp... [more]
CADH_EUCBO1.246e-1351.61Probable cinnamyl alcohol dehydrogenase OS=Eucalyp... [more]
CADH1_OCIBA1.246e-1350.79Cinnamyl alcohol dehydrogenase 1 OS=Ocimum basilic... [more]
CADH1_EUCGU1.246e-1351.61Probable cinnamyl alcohol dehydrogenase 1 OS=Eucal... [more]
CADH2_EUCGU1.627e-1350.00Probable cinnamyl alcohol dehydrogenase 2 OS=Eucal... [more]
CADH1_ARATH8.928e-1253.33Probable cinnamyl alcohol dehydrogenase 1 OS=Arabi... [more]
ADHA_BACSU2.598e-1155.93Probable formaldehyde dehydrogenase adhA OS=Bacill... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P23_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185217 ID=CN185217; Name=CN185217; organism=Citrus sinensis; type=EST; length=268bp
ATTCGTATTATTTTATTTGTTTATGTACTTTTTGTCACTCTGCTTGGTTG
AACTGGCGAAACTTATATGTTTGAGAAACTGGTGCTGATGATGTAACTAT
TAAGATCCTCTTTTGTGGGATTTGCCACTCGGACTTGCATTGTGCCAGAA
ATGAATGGGGTGTCACCAATTACCCAATTGTTCCCGGGCATGAAATTGTT
GGTACTGTGACAAAAAGTTTGGAAATAAACGTGTCAAAATTCAAAGAGGG
TGACAAGGTTGGAGTTGG
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