CN185203

Overview
NameCN185203
Unique NameCN185203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_GEOLS (50S ribosomal protein L27 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rpmA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.765e-27
Identity = 55/82 (67.07%), Postives = 68/82 (82.93%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GS++NGRDS GQRLG K FG ++ K G II RQRGT+ HPG NVG GKD+T+F+LI+G+VKFE+ G DRK++SVYP
Sbjct:    2 AHKKGVGSSRNGRDSDGQRLGCKKFGGELVKAGNIIYRQRGTQIHPGNNVGCGKDYTLFALIEGVVKFERLGRDRKKVSVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_GEOSL (50S ribosomal protein L27 OS=Geobacter sulfurreducens GN=rpmA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.127e-27
Identity = 55/82 (67.07%), Postives = 66/82 (80.49%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GST+NGRDS  +RLG K FG +  K G II RQRGT+ HPG NVG GKD+T+F+LIDG+VKFE+ G DRK++SVYP
Sbjct:    2 AHKKGVGSTRNGRDSESKRLGCKKFGGETVKAGNIIYRQRGTQIHPGTNVGCGKDYTLFALIDGVVKFERLGRDRKKVSVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_TRIEI (50S ribosomal protein L27 OS=Trichodesmium erythraeum (strain IMS101) GN=rpmA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.061e-26
Identity = 54/82 (65.85%), Postives = 68/82 (82.93%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GST+NGRDS  QRLGVK +G QV K G I+VRQRG+KFH G NVG+GKD+T+F+L++G+V FE+ G  RK++SVYP
Sbjct:    2 AHKKGTGSTRNGRDSNSQRLGVKRYGGQVVKAGNILVRQRGSKFHAGNNVGVGKDYTLFALVEGMVTFERKGKSRKKVSVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_WOLSU (50S ribosomal protein L27 OS=Wolinella succinogenes GN=rpmA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.386e-26
Identity = 54/82 (65.85%), Postives = 67/82 (81.71%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GST+N RDS G+RLGVK FG +  + G II+RQRGTK HPG NVG+G DHTIF+LIDG+VKFE+   +RK++S+YP
Sbjct:    2 AHKKGQGSTQNNRDSAGRRLGVKKFGGEFVRAGNIIIRQRGTKVHPGSNVGMGTDHTIFALIDGIVKFERKDKERKKVSIYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_NOSP7 (50S ribosomal protein L27 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rpmA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.811e-26
Identity = 55/81 (67.90%), Postives = 66/81 (81.48%), Query Frame = -3
Query:  267 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVY 509
            AHKKG GST+NGRDS  QRLGVK +G QV + G I+VRQRGTKFHPG NVG+G D T+F+LIDG+V FE+ G  RK++SVY
Sbjct:    2 AHKKGTGSTRNGRDSNAQRLGVKRYGGQVVRAGNILVRQRGTKFHPGNNVGIGSDDTLFALIDGVVMFERKGKTRKKVSVY 82          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_NAUPA (50S ribosomal protein L27 OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=rpmA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.365e-26
Identity = 57/84 (67.86%), Postives = 66/84 (78.57%), Query Frame = -3
Query:  258 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPRE 509
            AHKKG GST+N RDS G+RLGVK FG +  + G II+RQRGTK HPG NVGLGKDHTI++LIDG VKFE     RK++SVYP E
Sbjct:    2 AHKKGQGSTQNNRDSAGRRLGVKKFGGEFVRAGNIIIRQRGTKVHPGNNVGLGKDHTIYALIDGYVKFEIKDKQRKKVSVYPIE 85          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_BACTN (50S ribosomal protein L27 OS=Bacteroides thetaiotaomicron GN=rpmA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.365e-26
Identity = 52/84 (61.90%), Postives = 68/84 (80.95%), Query Frame = -3
Query:  258 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPRE 509
            AHKKG GS+KNGR+S  +RLGVKIFG +  K G II+RQRGT+FHPG+N+G+GKDHT+F+L+DG VKF+    DR+ +S+ P E
Sbjct:    2 AHKKGVGSSKNGRESHSKRLGVKIFGGEACKAGNIIIRQRGTEFHPGENIGMGKDHTLFALVDGTVKFKVGREDRRYVSIIPAE 85          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_ANAVT (50S ribosomal protein L27 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpmA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.365e-26
Identity = 56/88 (63.64%), Postives = 66/88 (75.00%), Query Frame = -3
Query:  246 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREVQPE 509
            AHKKG GST+NGRDS  QRLGVK FG Q    G I+VRQRGTKFH G NVG+GKD T+F+L+DG+V FE+ G  RK++SVYP     E
Sbjct:    2 AHKKGTGSTRNGRDSNAQRLGVKRFGGQAVIAGNILVRQRGTKFHAGNNVGIGKDDTLFALVDGVVTFERKGKSRKKVSVYPAAAAAE 89          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_ANASP (50S ribosomal protein L27 OS=Anabaena sp. (strain PCC 7120) GN=rpmA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.088e-26
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GST+NGRDS  QRLGVK FG Q    G I+VRQRGTKFH G NVG+GKD T+F+L+DG+V FE+ G  RK++SVYP
Sbjct:    2 AHKKGTGSTRNGRDSNAQRLGVKRFGGQAVIAGNILVRQRGTKFHAGNNVGIGKDDTLFALVDGVVTFERKGKSRKKVSVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RK27_SPIOL (50S ribosomal protein L27, chloroplastic (Fragment) OS=Spinacia oleracea GN=RPL27 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.088e-26
Identity = 54/58 (93.10%), Postives = 58/58 (100.00%), Query Frame = -3
Query:  336 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTI 509
            AHKKGAGSTKNGRDS+GQRLGVKI+GDQVAKPGAII+RQRGTKFHPGKNVG+GKDHTI
Sbjct:    1 AHKKGAGSTKNGRDSKGQRLGVKIYGDQVAKPGAIIIRQRGTKFHPGKNVGIGKDHTI 58          
The following BLAST results are available for this feature:
BLAST of CN185203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_GEOLS4.765e-2767.0750S ribosomal protein L27 OS=Geobacter lovleyi (st... [more]
RL27_GEOSL8.127e-2767.0750S ribosomal protein L27 OS=Geobacter sulfurreduc... [more]
RL27_TRIEI1.061e-2665.8550S ribosomal protein L27 OS=Trichodesmium erythra... [more]
RL27_WOLSU1.386e-2665.8550S ribosomal protein L27 OS=Wolinella succinogene... [more]
RL27_NOSP71.811e-2667.9050S ribosomal protein L27 OS=Nostoc punctiforme (s... [more]
RL27_NAUPA2.365e-2667.8650S ribosomal protein L27 OS=Nautilia profundicola... [more]
RL27_BACTN2.365e-2661.9050S ribosomal protein L27 OS=Bacteroides thetaiota... [more]
RL27_ANAVT2.365e-2663.6450S ribosomal protein L27 OS=Anabaena variabilis (... [more]
RL27_ANASP3.088e-2667.0750S ribosomal protein L27 OS=Anabaena sp. (strain ... [more]
RK27_SPIOL3.088e-2693.1050S ribosomal protein L27, chloroplastic (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185203 ID=CN185203; Name=CN185203; organism=Citrus sinensis; type=EST; length=691bp
GAGGCCTATTTCCATTGTGTGACGATAATGGGAAAAAAAAATTCAATAAG
ATACAAGAACTAACAAGTCGAAAAATAATGGGCAGCACTTCAGACTTAGC
AATTGGGAAGGCCATCAGCAGCATAATCGAGAGCAGAAGCAAGCACCAGC
TGAGGTTGAGCCAAATAAGCTTCCTTTCTAGCCTTCTTTTTCTCCCGCTG
CAACCTGAAGTACTCTCGCTTCCTTGCTCTGTAACTGTTGGGATTCTCAG
GCTGCACTTCTCTTGGGTAAACACTTATCTGCTTCCTGTCAGGCCCAAAC
TTCTCAAATTTGACTAGTCCATCAATCAAAGAGAATATTGTATGGTCCTT
GCCAAGCCCCACATTTTTCCCTGGATGGAACTTGGTGCCACGCTGGCGGA
CGATAATTGCGCCGGGCTTGGCGACCTGGTCACCGAAAATCTTGACGCCG
AGCCGCTGTCCCCGCGAATCACGGCCGTTCTTTGTGCTACCGGCTCCCTT
CTTGTGGGCAGATTCGATAGTTAAGGGTAGCGGCGACGTTGGTGGGAGGG
AAACGGTGACGGATTTGGGACACACGGTGAAATCGCCTTTGAGGAAGGAG
GAGGAAGAGCTTGAAGATAAAGAGAGACCCTTAAACGAGCCGATTAGGCT
CGCACTCATTGAAGCTGTTGCCATTTTTCTTCTCTCGGTTT
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