CN185203

Overview
NameCN185203
Unique NameCN185203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CLOB6 (50S ribosomal protein L27 OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.098e-23
Identity = 53/86 (61.63%), Postives = 64/86 (74.42%), Query Frame = -3
Query:  252 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREVQ 509
            AHKKG GS+KNGRDS  +RLGVK    Q    G I+VRQRGTK HPG NVG G D T+F+ IDG+VK+E+ G D+K+ SVYP EV+
Sbjct:   10 AHKKGVGSSKNGRDSEAKRLGVKCSDGQFVLAGNILVRQRGTKIHPGLNVGRGGDDTLFAKIDGVVKYERLGRDKKKASVYPVEVE 95          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CLOB1 (50S ribosomal protein L27 OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.098e-23
Identity = 53/86 (61.63%), Postives = 64/86 (74.42%), Query Frame = -3
Query:  252 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREVQ 509
            AHKKG GS+KNGRDS  +RLGVK    Q    G I+VRQRGTK HPG NVG G D T+F+ IDG+VK+E+ G D+K+ SVYP EV+
Sbjct:   10 AHKKGVGSSKNGRDSEAKRLGVKCSDGQFVLAGNILVRQRGTKIHPGLNVGRGGDDTLFAKIDGVVKYERLGRDKKKASVYPVEVE 95          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_AZOPC (50S ribosomal protein L27 OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=rpmA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.435e-23
Identity = 50/80 (62.50%), Postives = 63/80 (78.75%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISV 509
            AHKKG GS+KNGR+S  +RLGVK+FG ++ K G I+VRQRGTK HPG NVG+GKDHT++SLI+G V F K   +R  +SV
Sbjct:    2 AHKKGVGSSKNGRESHSKRLGVKVFGGEICKAGDILVRQRGTKHHPGNNVGIGKDHTLYSLIEGRVIFRKKQENRSYVSV 81          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_DESAA (50S ribosomal protein L27 OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rpmA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.874e-23
Identity = 47/82 (57.32%), Postives = 66/82 (80.49%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKK  GS++NGRDS GQR GVK +G ++ + G I+VRQ GT+ HPG+NVG+G+D+T+F+ IDG V +E+ G D+K++SVYP
Sbjct:    2 AHKKAGGSSRNGRDSNGQRRGVKRYGGEIVRAGNILVRQVGTRIHPGENVGMGRDYTLFATIDGKVAYERKGRDKKKVSVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_BUCAT (50S ribosomal protein L27 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=rpmA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.874e-23
Identity = 50/72 (69.44%), Postives = 59/72 (81.94%), Query Frame = -3
Query:  294 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFG 509
            AHKK  GST+NGRDS  QRLGVK FG Q+   G+IIV+QRGTKFHPGKNVG GKDHTIF+++ G V+F+K G
Sbjct:    2 AHKKAGGSTRNGRDSNAQRLGVKCFGGQLISAGSIIVKQRGTKFHPGKNVGCGKDHTIFAIVKGKVEFKKKG 73          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_BUCAI (50S ribosomal protein L27 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rpmA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.874e-23
Identity = 50/72 (69.44%), Postives = 59/72 (81.94%), Query Frame = -3
Query:  294 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFG 509
            AHKK  GST+NGRDS  QRLGVK FG Q+   G+IIV+QRGTKFHPGKNVG GKDHTIF+++ G V+F+K G
Sbjct:    2 AHKKAGGSTRNGRDSNAQRLGVKCFGGQLISAGSIIVKQRGTKFHPGKNVGCGKDHTIFAIVKGKVEFKKKG 73          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_BUCA5 (50S ribosomal protein L27 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=rpmA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.874e-23
Identity = 50/72 (69.44%), Postives = 59/72 (81.94%), Query Frame = -3
Query:  294 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFG 509
            AHKK  GST+NGRDS  QRLGVK FG Q+   G+IIV+QRGTKFHPGKNVG GKDHTIF+++ G V+F+K G
Sbjct:    2 AHKKAGGSTRNGRDSNAQRLGVKCFGGQLISAGSIIVKQRGTKFHPGKNVGCGKDHTIFAIVKGKVEFKKKG 73          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_ROSS1 (50S ribosomal protein L27 OS=Roseiflexus sp. (strain RS-1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.447e-23
Identity = 51/84 (60.71%), Postives = 66/84 (78.57%), Query Frame = -3
Query:  258 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPRE 509
            AHKKG GS++NGRDS  + LGVK FG +  +PG IIVRQRGTK  PG NVGLG+D+TI+SLI+G+V FE+   ++K++SVY  E
Sbjct:    2 AHKKGVGSSRNGRDSNPKMLGVKRFGGERVQPGTIIVRQRGTKIKPGNNVGLGRDYTIYSLIEGVVTFEQHSRNQKRVSVYATE 85          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_PSEHT (50S ribosomal protein L27 OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.447e-23
Identity = 52/81 (64.20%), Postives = 65/81 (80.25%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP-DRKQISV 509
            AHKK AGST+NGRDS  +RLGVK FG +    G+IIVRQRGT+FHPG NVG+GKDHTIF+  DG V+FE+ GP +RK +++
Sbjct:    2 AHKKAAGSTRNGRDSESKRLGVKRFGGESVLAGSIIVRQRGTRFHPGTNVGIGKDHTIFAKADGKVQFEQKGPLNRKYVTI 82          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_METFK (50S ribosomal protein L27 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.447e-23
Identity = 52/83 (62.65%), Postives = 62/83 (74.70%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP-DRKQISVYP 509
            AHKK  GS++NGRDS  QRLGVK FGDQ    G+IIVRQRGTK HPG+NVG+GKDHT+F+ +DG V F   G   RK +S+ P
Sbjct:    2 AHKKAGGSSRNGRDSNAQRLGVKAFGDQFVSAGSIIVRQRGTKMHPGENVGIGKDHTLFAKVDGKVAFSVKGALGRKLVSIIP 84          
The following BLAST results are available for this feature:
BLAST of CN185203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_CLOB61.098e-2361.6350S ribosomal protein L27 OS=Clostridium botulinum... [more]
RL27_CLOB11.098e-2361.6350S ribosomal protein L27 OS=Clostridium botulinum... [more]
RL27_AZOPC1.435e-2362.5050S ribosomal protein L27 OS=Azobacteroides pseudo... [more]
RL27_DESAA1.874e-2357.3250S ribosomal protein L27 OS=Desulfatibacillum alk... [more]
RL27_BUCAT1.874e-2369.4450S ribosomal protein L27 OS=Buchnera aphidicola s... [more]
RL27_BUCAI1.874e-2369.4450S ribosomal protein L27 OS=Buchnera aphidicola s... [more]
RL27_BUCA51.874e-2369.4450S ribosomal protein L27 OS=Buchnera aphidicola s... [more]
RL27_ROSS12.447e-2360.7150S ribosomal protein L27 OS=Roseiflexus sp. (stra... [more]
RL27_PSEHT2.447e-2364.2050S ribosomal protein L27 OS=Pseudoalteromonas hal... [more]
RL27_METFK2.447e-2362.6550S ribosomal protein L27 OS=Methylobacillus flage... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006P10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185203 ID=CN185203; Name=CN185203; organism=Citrus sinensis; type=EST; length=691bp
GAGGCCTATTTCCATTGTGTGACGATAATGGGAAAAAAAAATTCAATAAG
ATACAAGAACTAACAAGTCGAAAAATAATGGGCAGCACTTCAGACTTAGC
AATTGGGAAGGCCATCAGCAGCATAATCGAGAGCAGAAGCAAGCACCAGC
TGAGGTTGAGCCAAATAAGCTTCCTTTCTAGCCTTCTTTTTCTCCCGCTG
CAACCTGAAGTACTCTCGCTTCCTTGCTCTGTAACTGTTGGGATTCTCAG
GCTGCACTTCTCTTGGGTAAACACTTATCTGCTTCCTGTCAGGCCCAAAC
TTCTCAAATTTGACTAGTCCATCAATCAAAGAGAATATTGTATGGTCCTT
GCCAAGCCCCACATTTTTCCCTGGATGGAACTTGGTGCCACGCTGGCGGA
CGATAATTGCGCCGGGCTTGGCGACCTGGTCACCGAAAATCTTGACGCCG
AGCCGCTGTCCCCGCGAATCACGGCCGTTCTTTGTGCTACCGGCTCCCTT
CTTGTGGGCAGATTCGATAGTTAAGGGTAGCGGCGACGTTGGTGGGAGGG
AAACGGTGACGGATTTGGGACACACGGTGAAATCGCCTTTGAGGAAGGAG
GAGGAAGAGCTTGAAGATAAAGAGAGACCCTTAAACGAGCCGATTAGGCT
CGCACTCATTGAAGCTGTTGCCATTTTTCTTCTCTCGGTTT
back to top