CN185203

Overview
NameCN185203
Unique NameCN185203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_PSEP1 (50S ribosomal protein L27 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.174e-23
Identity = 49/72 (68.06%), Postives = 60/72 (83.33%), Query Frame = -3
Query:  294 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFG 509
            AHKK  GST+NGRDS  +RLGVK++G QV KPG IIVRQRGT+FH G  VG+GKDHT+F+ I+G++KFEK G
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKMYGGQVIKPGNIIVRQRGTEFHAGYGVGMGKDHTLFAKIEGVIKFEKKG 73          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_PSEE4 (50S ribosomal protein L27 OS=Pseudomonas entomophila (strain L48) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.174e-23
Identity = 49/72 (68.06%), Postives = 60/72 (83.33%), Query Frame = -3
Query:  294 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFG 509
            AHKK  GST+NGRDS  +RLGVK++G QV KPG IIVRQRGT+FH G  VG+GKDHT+F+ I+G++KFEK G
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKMYGGQVIKPGNIIVRQRGTEFHAGYGVGMGKDHTLFAKIEGVIKFEKKG 73          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_PSEAE (50S ribosomal protein L27 OS=Pseudomonas aeruginosa GN=rpmA PE=1 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 4.174e-23
Identity = 52/81 (64.20%), Postives = 62/81 (76.54%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP-DRKQISV 509
            AHKK  GST+NGRDS  +RLGVK+FG Q  K G I+VRQRGTKFH G  VGLGKDHT+F+ +DG+VKFE  G   RK +S+
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKLFGGQAVKAGNILVRQRGTKFHAGYGVGLGKDHTLFAKVDGVVKFETKGAFGRKYVSI 82          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_PSEAB (50S ribosomal protein L27 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.174e-23
Identity = 52/81 (64.20%), Postives = 62/81 (76.54%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP-DRKQISV 509
            AHKK  GST+NGRDS  +RLGVK+FG Q  K G I+VRQRGTKFH G  VGLGKDHT+F+ +DG+VKFE  G   RK +S+
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKLFGGQAVKAGNILVRQRGTKFHAGYGVGLGKDHTLFAKVDGVVKFETKGAFGRKYVSI 82          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_PSEA8 (50S ribosomal protein L27 OS=Pseudomonas aeruginosa (strain LESB58) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.174e-23
Identity = 52/81 (64.20%), Postives = 62/81 (76.54%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP-DRKQISV 509
            AHKK  GST+NGRDS  +RLGVK+FG Q  K G I+VRQRGTKFH G  VGLGKDHT+F+ +DG+VKFE  G   RK +S+
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKLFGGQAVKAGNILVRQRGTKFHAGYGVGLGKDHTLFAKVDGVVKFETKGAFGRKYVSI 82          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_PSEA7 (50S ribosomal protein L27 OS=Pseudomonas aeruginosa (strain PA7) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.174e-23
Identity = 52/81 (64.20%), Postives = 62/81 (76.54%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP-DRKQISV 509
            AHKK  GST+NGRDS  +RLGVK+FG Q  K G I+VRQRGTKFH G  VGLGKDHT+F+ +DG+VKFE  G   RK +S+
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKLFGGQAVKAGNILVRQRGTKFHAGYGVGLGKDHTLFAKVDGVVKFETKGAFGRKYVSI 82          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_POLNS (50S ribosomal protein L27 OS=Polynucleobacter necessarius (strain STIR1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.174e-23
Identity = 52/84 (61.90%), Postives = 65/84 (77.38%), Query Frame = -3
Query:  261 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRK-QISVYPR 509
            A KKG GST+NGRDS  +RLGVK+FG +    G+II+RQRGT+ HPG NVG+GKDHT+F+LIDG V+F   G  +K Q+SV PR
Sbjct:    2 AQKKGGGSTRNGRDSESKRLGVKVFGGEYINAGSIIIRQRGTRVHPGANVGIGKDHTLFALIDGQVEFGVKGALKKAQVSVLPR 85          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CUPTR (50S ribosomal protein L27 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.174e-23
Identity = 53/83 (63.86%), Postives = 63/83 (75.90%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRK-QISVYP 509
            A KKG GST+NGRDS  +RLGVK+FG Q    G IIVRQRGT+ H G NVG+GKDHT+F+LIDG V+F   GP +K Q+SV P
Sbjct:    2 AQKKGGGSTRNGRDSESKRLGVKVFGGQAINAGGIIVRQRGTRVHAGDNVGVGKDHTLFALIDGHVQFAVKGPAKKQQVSVVP 84          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_AZOVD (50S ribosomal protein L27 OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.174e-23
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP-DRKQISVYP 509
            AHKK  GST+NGRDS  +RLGVKIFG Q  + G IIVRQRGT+FHPG  VG+GKDHT+F+ ++G+VKFE  G   R+ +SV P
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKIFGGQAIRAGNIIVRQRGTQFHPGFGVGIGKDHTLFAKVEGVVKFEVKGAFGRRYVSVVP 84          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CLOPH (50S ribosomal protein L27 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.451e-23
Identity = 52/86 (60.47%), Postives = 62/86 (72.09%), Query Frame = -3
Query:  252 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREVQ 509
            AHKKG GSTKNGRDS  +RLG K    Q    G I+ RQRGTK HPG NVG G D T+F+L+DG++KFE+ G D+KQ SVYP E +
Sbjct:   10 AHKKGVGSTKNGRDSESKRLGAKRADGQFVLAGNILYRQRGTKIHPGVNVGRGGDDTLFALVDGVLKFERKGRDKKQASVYPVEAK 95          
The following BLAST results are available for this feature:
BLAST of CN185203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_PSEP14.174e-2368.0650S ribosomal protein L27 OS=Pseudomonas putida (s... [more]
RL27_PSEE44.174e-2368.0650S ribosomal protein L27 OS=Pseudomonas entomophi... [more]
RL27_PSEAE4.174e-2364.2050S ribosomal protein L27 OS=Pseudomonas aeruginos... [more]
RL27_PSEAB4.174e-2364.2050S ribosomal protein L27 OS=Pseudomonas aeruginos... [more]
RL27_PSEA84.174e-2364.2050S ribosomal protein L27 OS=Pseudomonas aeruginos... [more]
RL27_PSEA74.174e-2364.2050S ribosomal protein L27 OS=Pseudomonas aeruginos... [more]
RL27_POLNS4.174e-2361.9050S ribosomal protein L27 OS=Polynucleobacter nece... [more]
RL27_CUPTR4.174e-2363.8650S ribosomal protein L27 OS=Cupriavidus taiwanens... [more]
RL27_AZOVD4.174e-2362.6550S ribosomal protein L27 OS=Azotobacter vinelandi... [more]
RL27_CLOPH5.451e-2360.4750S ribosomal protein L27 OS=Clostridium phytoferm... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185203 ID=CN185203; Name=CN185203; organism=Citrus sinensis; type=EST; length=691bp
GAGGCCTATTTCCATTGTGTGACGATAATGGGAAAAAAAAATTCAATAAG
ATACAAGAACTAACAAGTCGAAAAATAATGGGCAGCACTTCAGACTTAGC
AATTGGGAAGGCCATCAGCAGCATAATCGAGAGCAGAAGCAAGCACCAGC
TGAGGTTGAGCCAAATAAGCTTCCTTTCTAGCCTTCTTTTTCTCCCGCTG
CAACCTGAAGTACTCTCGCTTCCTTGCTCTGTAACTGTTGGGATTCTCAG
GCTGCACTTCTCTTGGGTAAACACTTATCTGCTTCCTGTCAGGCCCAAAC
TTCTCAAATTTGACTAGTCCATCAATCAAAGAGAATATTGTATGGTCCTT
GCCAAGCCCCACATTTTTCCCTGGATGGAACTTGGTGCCACGCTGGCGGA
CGATAATTGCGCCGGGCTTGGCGACCTGGTCACCGAAAATCTTGACGCCG
AGCCGCTGTCCCCGCGAATCACGGCCGTTCTTTGTGCTACCGGCTCCCTT
CTTGTGGGCAGATTCGATAGTTAAGGGTAGCGGCGACGTTGGTGGGAGGG
AAACGGTGACGGATTTGGGACACACGGTGAAATCGCCTTTGAGGAAGGAG
GAGGAAGAGCTTGAAGATAAAGAGAGACCCTTAAACGAGCCGATTAGGCT
CGCACTCATTGAAGCTGTTGCCATTTTTCTTCTCTCGGTTT
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