CN185203

Overview
NameCN185203
Unique NameCN185203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_BORPD (50S ribosomal protein L27 OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.451e-23
Identity = 51/78 (65.38%), Postives = 61/78 (78.21%), Query Frame = -3
Query:  276 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQI 509
            A KKG GST+NGRDS  +RLGVK+FG Q    G+IIVRQRGT+FHPG NVG+GKDHT+F+LIDG V+F   G   KQ+
Sbjct:    2 AQKKGGGSTRNGRDSESKRLGVKVFGGQQIPAGSIIVRQRGTRFHPGTNVGIGKDHTLFALIDGKVQFGFKGALNKQV 79          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RK27_EMIHU (50S ribosomal protein L27, chloroplastic OS=Emiliania huxleyi GN=rpl27 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.451e-23
Identity = 49/70 (70.00%), Postives = 59/70 (84.29%), Query Frame = -3
Query:  300 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEK 509
            AHKKGAGSTKNGRDS  +RLGVK++G+Q  K G II+RQRG  F PG NVG+GKD+T+F+L +GLVKFEK
Sbjct:    2 AHKKGAGSTKNGRDSNSKRLGVKVYGNQAVKAGGIIIRQRGLTFKPGSNVGVGKDYTLFALKEGLVKFEK 71          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_WIGBR (50S ribosomal protein L27 OS=Wigglesworthia glossinidia brevipalpis GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.120e-23
Identity = 52/83 (62.65%), Postives = 67/83 (80.72%), Query Frame = -3
Query:  261 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPR 509
            AHKK  GST+NGRDS G+RLGVK+FG Q A PG IIVRQRGTKFHPGKNVG GKD+++++L  G+V F+K   ++K I++ P+
Sbjct:    2 AHKKAGGSTRNGRDSIGKRLGVKLFGGQKAYPGNIIVRQRGTKFHPGKNVGCGKDYSLYALKSGIVFFKK-KKNKKFINIIPK 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_TERTT (50S ribosomal protein L27 OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.120e-23
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP-DRKQISV 509
            AHKK  GST+NGRDS  +RLGVK+FG Q  K G I+VRQRGTKFH G+NVG+GKDHT+F+   G VKFE  GP +RK +S+
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKLFGGQEVKAGNILVRQRGTKFHGGENVGMGKDHTLFAKTAGKVKFEVKGPKNRKYVSI 82          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_RALEJ (50S ribosomal protein L27 OS=Ralstonia eutropha (strain JMP134) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.120e-23
Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQ-ISVYP 509
            A KKG GST+NGRDS  +RLGVK+FG Q    G II+RQRGT+ H G NVG+GKDHT+F+L+DG V+F   GP +KQ +SV P
Sbjct:    2 AQKKGGGSTRNGRDSESKRLGVKVFGGQAINAGGIIIRQRGTRVHAGDNVGVGKDHTLFALVDGHVQFAVKGPAKKQHVSVVP 84          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_RALEH (50S ribosomal protein L27 OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.120e-23
Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRK-QISVYP 509
            A KKG GST+NGRDS  +RLGVK+FG Q    G II+RQRGT+ H G NVG+GKDHT+F+L+DG V+F   GP +K Q+SV P
Sbjct:    2 AQKKGGGSTRNGRDSESKRLGVKVFGGQAINAGGIIIRQRGTRVHAGDNVGVGKDHTLFALVDGHVQFAVKGPAKKQQVSVVP 84          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_PSEPW (50S ribosomal protein L27 OS=Pseudomonas putida (strain W619) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.120e-23
Identity = 50/81 (61.73%), Postives = 65/81 (80.25%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP-DRKQISV 509
            AHKK  GST+NGRDS  +RLGVK++G QV K G IIVRQRGT+FH G  VG+GKDHT+F+ I+G++KFEK G  +R+ +S+
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKMYGSQVVKAGNIIVRQRGTQFHAGYGVGMGKDHTLFAKIEGVIKFEKKGEFNRRYVSI 82          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_POLSQ (50S ribosomal protein L27 OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.120e-23
Identity = 52/84 (61.90%), Postives = 65/84 (77.38%), Query Frame = -3
Query:  261 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRK-QISVYPR 509
            A KKG GST+NGRDS  +RLGVK+FG +    G+II+RQRGT+ HPG NVG+GKDHT+F+LIDG V+F   G  +K Q+SV PR
Sbjct:    2 AQKKGGGSTRNGRDSESKRLGVKVFGGEHINAGSIIIRQRGTRVHPGANVGIGKDHTLFALIDGQVEFGVKGALKKAQVSVLPR 85          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_EUBR3 (50S ribosomal protein L27 OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.120e-23
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GSTKNGRDS  +RLG K    Q  K G I+ RQRGTK HPG NVG+G D T+++ +DG+++FE+ G D+KQ SVYP
Sbjct:   10 AHKKGVGSTKNGRDSESKRLGAKRADGQFVKAGNILYRQRGTKIHPGTNVGIGGDDTLYAKVDGVLRFERVGRDKKQASVYP 91          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_DESOH (50S ribosomal protein L27 OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.120e-23
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = -3
Query:  267 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVY 509
            AHKK  GS+KNGRDSRGQR GVK FG +  + G I+VRQ GT FHPG NVGLG+D+T+F+ IDG+V +E  G  RKQ+SVY
Sbjct:    2 AHKKAGGSSKNGRDSRGQRRGVKRFGGEKVRAGNILVRQLGTHFHPGNNVGLGRDYTLFAKIDGVVTYESSGA-RKQVSVY 81          
The following BLAST results are available for this feature:
BLAST of CN185203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_BORPD5.451e-2365.3850S ribosomal protein L27 OS=Bordetella petrii (st... [more]
RK27_EMIHU5.451e-2370.0050S ribosomal protein L27, chloroplastic OS=Emilia... [more]
RL27_WIGBR7.120e-2362.6550S ribosomal protein L27 OS=Wigglesworthia glossi... [more]
RL27_TERTT7.120e-2364.2050S ribosomal protein L27 OS=Teredinibacter turner... [more]
RL27_RALEJ7.120e-2361.4550S ribosomal protein L27 OS=Ralstonia eutropha (s... [more]
RL27_RALEH7.120e-2361.4550S ribosomal protein L27 OS=Ralstonia eutropha (s... [more]
RL27_PSEPW7.120e-2361.7350S ribosomal protein L27 OS=Pseudomonas putida (s... [more]
RL27_POLSQ7.120e-2361.9050S ribosomal protein L27 OS=Polynucleobacter sp. ... [more]
RL27_EUBR37.120e-2359.7650S ribosomal protein L27 OS=Eubacterium rectale (... [more]
RL27_DESOH7.120e-2364.2050S ribosomal protein L27 OS=Desulfococcus oleovor... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185203 ID=CN185203; Name=CN185203; organism=Citrus sinensis; type=EST; length=691bp
GAGGCCTATTTCCATTGTGTGACGATAATGGGAAAAAAAAATTCAATAAG
ATACAAGAACTAACAAGTCGAAAAATAATGGGCAGCACTTCAGACTTAGC
AATTGGGAAGGCCATCAGCAGCATAATCGAGAGCAGAAGCAAGCACCAGC
TGAGGTTGAGCCAAATAAGCTTCCTTTCTAGCCTTCTTTTTCTCCCGCTG
CAACCTGAAGTACTCTCGCTTCCTTGCTCTGTAACTGTTGGGATTCTCAG
GCTGCACTTCTCTTGGGTAAACACTTATCTGCTTCCTGTCAGGCCCAAAC
TTCTCAAATTTGACTAGTCCATCAATCAAAGAGAATATTGTATGGTCCTT
GCCAAGCCCCACATTTTTCCCTGGATGGAACTTGGTGCCACGCTGGCGGA
CGATAATTGCGCCGGGCTTGGCGACCTGGTCACCGAAAATCTTGACGCCG
AGCCGCTGTCCCCGCGAATCACGGCCGTTCTTTGTGCTACCGGCTCCCTT
CTTGTGGGCAGATTCGATAGTTAAGGGTAGCGGCGACGTTGGTGGGAGGG
AAACGGTGACGGATTTGGGACACACGGTGAAATCGCCTTTGAGGAAGGAG
GAGGAAGAGCTTGAAGATAAAGAGAGACCCTTAAACGAGCCGATTAGGCT
CGCACTCATTGAAGCTGTTGCCATTTTTCTTCTCTCGGTTT
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