CN185203

Overview
NameCN185203
Unique NameCN185203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CLOD6 (50S ribosomal protein L27 OS=Clostridium difficile (strain 630) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.120e-23
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            A KKG GS+KNGRDS  +RLGVK F  Q+   G+IIVRQRGTK HPG NVG G D T+F+L+DG VKFE+    RK++S+YP
Sbjct:   10 ASKKGVGSSKNGRDSISKRLGVKRFDGQLVTAGSIIVRQRGTKIHPGTNVGKGSDDTLFALVDGTVKFERKDKKRKKVSIYP 91          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CELJU (50S ribosomal protein L27 OS=Cellvibrio japonicus (strain Ueda107) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.120e-23
Identity = 51/83 (61.45%), Postives = 64/83 (77.11%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP-DRKQISVYP 509
            AHKKG GS++NGRDS  +RLGVK FG ++   G+IIVRQRGTKFH G+N GLGKDHTI++ +DG VKFE  G   R+ +S+ P
Sbjct:    2 AHKKGVGSSRNGRDSEAKRLGVKAFGGELVSGGSIIVRQRGTKFHAGENTGLGKDHTIYAKVDGRVKFEVKGAFGRQYVSIIP 84          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_BUCAP (50S ribosomal protein L27 OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.120e-23
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = -3
Query:  294 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFG 509
            AHKK  GST+NGRDS  QRLG+K FG ++   G+IIVRQRGTKFHPGKNVG GKDHTIF+ + G V+F+K G
Sbjct:    2 AHKKAGGSTRNGRDSNAQRLGIKCFGGELIPAGSIIVRQRGTKFHPGKNVGCGKDHTIFATVKGKVEFKKKG 73          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RK27_GUITH (50S ribosomal protein L27, chloroplastic OS=Guillardia theta GN=rpl27 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.120e-23
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG+GST+NGRDS  QRLGVK +G +    G I++RQRGT    G NVG+GKD+T++SLI+G VKFE+F   RK+ISVYP
Sbjct:    2 AHKKGSGSTRNGRDSNAQRLGVKKYGGEYVIAGNILIRQRGTNVKAGFNVGIGKDNTLYSLINGEVKFERFDKKRKKISVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_YERPY (50S ribosomal protein L27 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.299e-23
Identity = 54/81 (66.67%), Postives = 62/81 (76.54%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP-DRKQISV 509
            AHKK  GST+NGRDS  +RLGVK FG +    G+IIVRQRGTKFH G NVG GKDHT+F+L DG VKFE  GP +RK IS+
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGINVGCGKDHTLFALADGKVKFEVKGPKNRKFISI 82          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_YERPS (50S ribosomal protein L27 OS=Yersinia pseudotuberculosis GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.299e-23
Identity = 54/81 (66.67%), Postives = 62/81 (76.54%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP-DRKQISV 509
            AHKK  GST+NGRDS  +RLGVK FG +    G+IIVRQRGTKFH G NVG GKDHT+F+L DG VKFE  GP +RK IS+
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGINVGCGKDHTLFALADGKVKFEVKGPKNRKFISI 82          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_YERPP (50S ribosomal protein L27 OS=Yersinia pestis (strain Pestoides F) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.299e-23
Identity = 54/81 (66.67%), Postives = 62/81 (76.54%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP-DRKQISV 509
            AHKK  GST+NGRDS  +RLGVK FG +    G+IIVRQRGTKFH G NVG GKDHT+F+L DG VKFE  GP +RK IS+
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGINVGCGKDHTLFALADGKVKFEVKGPKNRKFISI 82          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_YERPN (50S ribosomal protein L27 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.299e-23
Identity = 54/81 (66.67%), Postives = 62/81 (76.54%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP-DRKQISV 509
            AHKK  GST+NGRDS  +RLGVK FG +    G+IIVRQRGTKFH G NVG GKDHT+F+L DG VKFE  GP +RK IS+
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGINVGCGKDHTLFALADGKVKFEVKGPKNRKFISI 82          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_YERPG (50S ribosomal protein L27 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.299e-23
Identity = 54/81 (66.67%), Postives = 62/81 (76.54%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP-DRKQISV 509
            AHKK  GST+NGRDS  +RLGVK FG +    G+IIVRQRGTKFH G NVG GKDHT+F+L DG VKFE  GP +RK IS+
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGINVGCGKDHTLFALADGKVKFEVKGPKNRKFISI 82          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_YERPE (50S ribosomal protein L27 OS=Yersinia pestis GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.299e-23
Identity = 54/81 (66.67%), Postives = 62/81 (76.54%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP-DRKQISV 509
            AHKK  GST+NGRDS  +RLGVK FG +    G+IIVRQRGTKFH G NVG GKDHT+F+L DG VKFE  GP +RK IS+
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGINVGCGKDHTLFALADGKVKFEVKGPKNRKFISI 82          
The following BLAST results are available for this feature:
BLAST of CN185203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_CLOD67.120e-2362.2050S ribosomal protein L27 OS=Clostridium difficile... [more]
RL27_CELJU7.120e-2361.4550S ribosomal protein L27 OS=Cellvibrio japonicus ... [more]
RL27_BUCAP7.120e-2368.0650S ribosomal protein L27 OS=Buchnera aphidicola s... [more]
RK27_GUITH7.120e-2362.2050S ribosomal protein L27, chloroplastic OS=Guilla... [more]
RL27_YERPY9.299e-2366.6750S ribosomal protein L27 OS=Yersinia pseudotuberc... [more]
RL27_YERPS9.299e-2366.6750S ribosomal protein L27 OS=Yersinia pseudotuberc... [more]
RL27_YERPP9.299e-2366.6750S ribosomal protein L27 OS=Yersinia pestis (stra... [more]
RL27_YERPN9.299e-2366.6750S ribosomal protein L27 OS=Yersinia pestis bv. A... [more]
RL27_YERPG9.299e-2366.6750S ribosomal protein L27 OS=Yersinia pestis bv. A... [more]
RL27_YERPE9.299e-2366.6750S ribosomal protein L27 OS=Yersinia pestis GN=rp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006P10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185203 ID=CN185203; Name=CN185203; organism=Citrus sinensis; type=EST; length=691bp
GAGGCCTATTTCCATTGTGTGACGATAATGGGAAAAAAAAATTCAATAAG
ATACAAGAACTAACAAGTCGAAAAATAATGGGCAGCACTTCAGACTTAGC
AATTGGGAAGGCCATCAGCAGCATAATCGAGAGCAGAAGCAAGCACCAGC
TGAGGTTGAGCCAAATAAGCTTCCTTTCTAGCCTTCTTTTTCTCCCGCTG
CAACCTGAAGTACTCTCGCTTCCTTGCTCTGTAACTGTTGGGATTCTCAG
GCTGCACTTCTCTTGGGTAAACACTTATCTGCTTCCTGTCAGGCCCAAAC
TTCTCAAATTTGACTAGTCCATCAATCAAAGAGAATATTGTATGGTCCTT
GCCAAGCCCCACATTTTTCCCTGGATGGAACTTGGTGCCACGCTGGCGGA
CGATAATTGCGCCGGGCTTGGCGACCTGGTCACCGAAAATCTTGACGCCG
AGCCGCTGTCCCCGCGAATCACGGCCGTTCTTTGTGCTACCGGCTCCCTT
CTTGTGGGCAGATTCGATAGTTAAGGGTAGCGGCGACGTTGGTGGGAGGG
AAACGGTGACGGATTTGGGACACACGGTGAAATCGCCTTTGAGGAAGGAG
GAGGAAGAGCTTGAAGATAAAGAGAGACCCTTAAACGAGCCGATTAGGCT
CGCACTCATTGAAGCTGTTGCCATTTTTCTTCTCTCGGTTT
back to top