CN185203

Overview
NameCN185203
Unique NameCN185203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_YERPB (50S ribosomal protein L27 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.299e-23
Identity = 54/81 (66.67%), Postives = 62/81 (76.54%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP-DRKQISV 509
            AHKK  GST+NGRDS  +RLGVK FG +    G+IIVRQRGTKFH G NVG GKDHT+F+L DG VKFE  GP +RK IS+
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGINVGCGKDHTLFALADGKVKFEVKGPKNRKFISI 82          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_YERPA (50S ribosomal protein L27 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.299e-23
Identity = 54/81 (66.67%), Postives = 62/81 (76.54%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP-DRKQISV 509
            AHKK  GST+NGRDS  +RLGVK FG +    G+IIVRQRGTKFH G NVG GKDHT+F+L DG VKFE  GP +RK IS+
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGINVGCGKDHTLFALADGKVKFEVKGPKNRKFISI 82          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_YERP3 (50S ribosomal protein L27 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.299e-23
Identity = 54/81 (66.67%), Postives = 62/81 (76.54%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP-DRKQISV 509
            AHKK  GST+NGRDS  +RLGVK FG +    G+IIVRQRGTKFH G NVG GKDHT+F+L DG VKFE  GP +RK IS+
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGINVGCGKDHTLFALADGKVKFEVKGPKNRKFISI 82          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_SERP5 (50S ribosomal protein L27 OS=Serratia proteamaculans (strain 568) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.299e-23
Identity = 54/81 (66.67%), Postives = 62/81 (76.54%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP-DRKQISV 509
            AHKK  GST+NGRDS  +RLGVK FG +    G+IIVRQRGTKFH G NVG GKDHT+F+L DG VKFE  GP +RK IS+
Sbjct:    2 AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGKDHTLFALKDGKVKFEVKGPSNRKFISI 82          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_MARAV (50S ribosomal protein L27 OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.299e-23
Identity = 51/83 (61.45%), Postives = 64/83 (77.11%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP-DRKQISVYP 509
            AHKK AGST+NGRDS  +RLGVK +G +    G+IIVRQRGT+FH G NVG+GKDHT+F+  +G VKFE  GP +RK +S+ P
Sbjct:    2 AHKKAAGSTRNGRDSESKRLGVKRYGGESVSAGSIIVRQRGTRFHAGSNVGIGKDHTLFAKAEGQVKFETKGPQNRKFVSIVP 84          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_LACAC (50S ribosomal protein L27 OS=Lactobacillus acidophilus GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.299e-23
Identity = 51/84 (60.71%), Postives = 62/84 (73.81%), Query Frame = -3
Query:  258 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPRE 509
            AH KG GST NGR+S G+RLG K    Q    G+II RQRGTK HPGKNVG G D T+F+L++G+VKFE+ G  +KQ+SVYP E
Sbjct:   10 AHHKGGGSTANGRNSAGRRLGAKAGDGQEIHAGSIIYRQRGTKIHPGKNVGQGGDDTLFALVNGVVKFERLGKYKKQVSVYPAE 93          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_VIBCM (50S ribosomal protein L27 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rpmA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.214e-22
Identity = 54/85 (63.53%), Postives = 63/85 (74.12%), Query Frame = -3
Query:  258 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP-DRKQISVYPRE 509
            AHKK  GST+NGRDS  +RLGVK FG +    G IIVRQRGTKFH G NVG+GKDHT+F+L DG VKFE  GP +RK +S+   E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGIGKDHTLFALSDGKVKFEVKGPNNRKFVSIETAE 86          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_VIBCH (50S ribosomal protein L27 OS=Vibrio cholerae GN=rpmA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.214e-22
Identity = 54/85 (63.53%), Postives = 63/85 (74.12%), Query Frame = -3
Query:  258 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP-DRKQISVYPRE 509
            AHKK  GST+NGRDS  +RLGVK FG +    G IIVRQRGTKFH G NVG+GKDHT+F+L DG VKFE  GP +RK +S+   E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGIGKDHTLFALSDGKVKFEVKGPNNRKFVSIETAE 86          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_VIBC3 (50S ribosomal protein L27 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=rpmA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.214e-22
Identity = 54/85 (63.53%), Postives = 63/85 (74.12%), Query Frame = -3
Query:  258 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP-DRKQISVYPRE 509
            AHKK  GST+NGRDS  +RLGVK FG +    G IIVRQRGTKFH G NVG+GKDHT+F+L DG VKFE  GP +RK +S+   E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGIGKDHTLFALSDGKVKFEVKGPNNRKFVSIETAE 86          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_PSEMY (50S ribosomal protein L27 OS=Pseudomonas mendocina (strain ymp) GN=rpmA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.214e-22
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP-DRKQISV 509
            AHKK  GST+NGRDS  +RLGVK++G QV K G IIVRQRGT+FHPG  VG+GKDHT+F+ I+G+VKFE  G   R+ +SV
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKMYGGQVIKAGNIIVRQRGTEFHPGFGVGMGKDHTLFAKIEGVVKFEVKGAFGRRYVSV 82          
The following BLAST results are available for this feature:
BLAST of CN185203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_YERPB9.299e-2366.6750S ribosomal protein L27 OS=Yersinia pseudotuberc... [more]
RL27_YERPA9.299e-2366.6750S ribosomal protein L27 OS=Yersinia pestis bv. A... [more]
RL27_YERP39.299e-2366.6750S ribosomal protein L27 OS=Yersinia pseudotuberc... [more]
RL27_SERP59.299e-2366.6750S ribosomal protein L27 OS=Serratia proteamacula... [more]
RL27_MARAV9.299e-2361.4550S ribosomal protein L27 OS=Marinobacter aquaeole... [more]
RL27_LACAC9.299e-2360.7150S ribosomal protein L27 OS=Lactobacillus acidoph... [more]
RL27_VIBCM1.214e-2263.5350S ribosomal protein L27 OS=Vibrio cholerae serot... [more]
RL27_VIBCH1.214e-2263.5350S ribosomal protein L27 OS=Vibrio cholerae GN=rp... [more]
RL27_VIBC31.214e-2263.5350S ribosomal protein L27 OS=Vibrio cholerae serot... [more]
RL27_PSEMY1.214e-2264.2050S ribosomal protein L27 OS=Pseudomonas mendocina... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185203 ID=CN185203; Name=CN185203; organism=Citrus sinensis; type=EST; length=691bp
GAGGCCTATTTCCATTGTGTGACGATAATGGGAAAAAAAAATTCAATAAG
ATACAAGAACTAACAAGTCGAAAAATAATGGGCAGCACTTCAGACTTAGC
AATTGGGAAGGCCATCAGCAGCATAATCGAGAGCAGAAGCAAGCACCAGC
TGAGGTTGAGCCAAATAAGCTTCCTTTCTAGCCTTCTTTTTCTCCCGCTG
CAACCTGAAGTACTCTCGCTTCCTTGCTCTGTAACTGTTGGGATTCTCAG
GCTGCACTTCTCTTGGGTAAACACTTATCTGCTTCCTGTCAGGCCCAAAC
TTCTCAAATTTGACTAGTCCATCAATCAAAGAGAATATTGTATGGTCCTT
GCCAAGCCCCACATTTTTCCCTGGATGGAACTTGGTGCCACGCTGGCGGA
CGATAATTGCGCCGGGCTTGGCGACCTGGTCACCGAAAATCTTGACGCCG
AGCCGCTGTCCCCGCGAATCACGGCCGTTCTTTGTGCTACCGGCTCCCTT
CTTGTGGGCAGATTCGATAGTTAAGGGTAGCGGCGACGTTGGTGGGAGGG
AAACGGTGACGGATTTGGGACACACGGTGAAATCGCCTTTGAGGAAGGAG
GAGGAAGAGCTTGAAGATAAAGAGAGACCCTTAAACGAGCCGATTAGGCT
CGCACTCATTGAAGCTGTTGCCATTTTTCTTCTCTCGGTTT
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