CN185203

Overview
NameCN185203
Unique NameCN185203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_PROMH (50S ribosomal protein L27 OS=Proteus mirabilis (strain HI4320) GN=rpmA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.214e-22
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP-DRKQISV 509
            AHKK  GST+NGRDS  +RLGVK FG +    G+IIVRQRGTKFH G NVG G+DHT+F+L DG VKFE  GP +RK IS+
Sbjct:    2 AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFALADGKVKFEVKGPNNRKFISI 82          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_PECCP (50S ribosomal protein L27 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.214e-22
Identity = 54/81 (66.67%), Postives = 61/81 (75.31%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP-DRKQISV 509
            AHKK  GST+NGRDS  QRLGVK FG +    G IIVRQRGTKFH G NVG GKDHT+F+L DG V+FE  GP +RK IS+
Sbjct:    2 AHKKAGGSTRNGRDSNAQRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGCGKDHTLFALTDGKVQFEVKGPKNRKYISI 82          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_KLEP7 (50S ribosomal protein L27 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rpmA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.214e-22
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP-DRKQISV 509
            AHKK  GST+NGRDS  +RLGVK FG +    G+IIVRQRGTKFH G NVG G+DHT+F+L DG VKFE  GP +RK IS+
Sbjct:    2 AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFALTDGKVKFEVKGPKNRKFISI 82          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_KLEP3 (50S ribosomal protein L27 OS=Klebsiella pneumoniae (strain 342) GN=rpmA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.214e-22
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP-DRKQISV 509
            AHKK  GST+NGRDS  +RLGVK FG +    G+IIVRQRGTKFH G NVG G+DHT+F+L DG VKFE  GP +RK IS+
Sbjct:    2 AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFALTDGKVKFEVKGPKNRKFISI 82          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_BURVG (50S ribosomal protein L27 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=rpmA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.214e-22
Identity = 47/80 (58.75%), Postives = 61/80 (76.25%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISV 509
            AHKK  GS++NGRDS  +RLGVK++G Q    G IIVRQRGT+ H G+NVG+GKDHT+F+L+DG VKF   G D+K + +
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKVYGGQAINAGGIIVRQRGTRMHAGENVGMGKDHTLFALVDGHVKFATKGADKKHLVI 81          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_BURS3 (50S ribosomal protein L27 OS=Burkholderia sp. (strain 383) GN=rpmA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.214e-22
Identity = 47/80 (58.75%), Postives = 61/80 (76.25%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISV 509
            AHKK  GS++NGRDS  +RLGVK++G Q    G IIVRQRGT+ H G+NVG+GKDHT+F+L+DG VKF   G D+K + +
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKVYGGQAINAGGIIVRQRGTRMHAGENVGMGKDHTLFALVDGHVKFATKGADKKHLVI 81          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_BURCM (50S ribosomal protein L27 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=rpmA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.214e-22
Identity = 47/80 (58.75%), Postives = 61/80 (76.25%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISV 509
            AHKK  GS++NGRDS  +RLGVK++G Q    G IIVRQRGT+ H G+NVG+GKDHT+F+L+DG VKF   G D+K + +
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKVYGGQAINAGGIIVRQRGTRMHAGENVGMGKDHTLFALVDGHVKFATKGADKKHLVI 81          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_BURCJ (50S ribosomal protein L27 OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=rpmA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.214e-22
Identity = 47/80 (58.75%), Postives = 61/80 (76.25%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISV 509
            AHKK  GS++NGRDS  +RLGVK++G Q    G IIVRQRGT+ H G+NVG+GKDHT+F+L+DG VKF   G D+K + +
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKVYGGQAINAGGIIVRQRGTRMHAGENVGMGKDHTLFALVDGHVKFATKGADKKHLVI 81          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_BURCH (50S ribosomal protein L27 OS=Burkholderia cenocepacia (strain HI2424) GN=rpmA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.214e-22
Identity = 47/80 (58.75%), Postives = 61/80 (76.25%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISV 509
            AHKK  GS++NGRDS  +RLGVK++G Q    G IIVRQRGT+ H G+NVG+GKDHT+F+L+DG VKF   G D+K + +
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKVYGGQAINAGGIIVRQRGTRMHAGENVGMGKDHTLFALVDGHVKFATKGADKKHLVI 81          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_BURCC (50S ribosomal protein L27 OS=Burkholderia cenocepacia (strain MC0-3) GN=rpmA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.214e-22
Identity = 47/80 (58.75%), Postives = 61/80 (76.25%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISV 509
            AHKK  GS++NGRDS  +RLGVK++G Q    G IIVRQRGT+ H G+NVG+GKDHT+F+L+DG VKF   G D+K + +
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKVYGGQAINAGGIIVRQRGTRMHAGENVGMGKDHTLFALVDGHVKFATKGADKKHLVI 81          
The following BLAST results are available for this feature:
BLAST of CN185203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_PROMH1.214e-2265.4350S ribosomal protein L27 OS=Proteus mirabilis (st... [more]
RL27_PECCP1.214e-2266.6750S ribosomal protein L27 OS=Pectobacterium caroto... [more]
RL27_KLEP71.214e-2265.4350S ribosomal protein L27 OS=Klebsiella pneumoniae... [more]
RL27_KLEP31.214e-2265.4350S ribosomal protein L27 OS=Klebsiella pneumoniae... [more]
RL27_BURVG1.214e-2258.7550S ribosomal protein L27 OS=Burkholderia vietnami... [more]
RL27_BURS31.214e-2258.7550S ribosomal protein L27 OS=Burkholderia sp. (str... [more]
RL27_BURCM1.214e-2258.7550S ribosomal protein L27 OS=Burkholderia ambifari... [more]
RL27_BURCJ1.214e-2258.7550S ribosomal protein L27 OS=Burkholderia cepacia ... [more]
RL27_BURCH1.214e-2258.7550S ribosomal protein L27 OS=Burkholderia cenocepa... [more]
RL27_BURCC1.214e-2258.7550S ribosomal protein L27 OS=Burkholderia cenocepa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185203 ID=CN185203; Name=CN185203; organism=Citrus sinensis; type=EST; length=691bp
GAGGCCTATTTCCATTGTGTGACGATAATGGGAAAAAAAAATTCAATAAG
ATACAAGAACTAACAAGTCGAAAAATAATGGGCAGCACTTCAGACTTAGC
AATTGGGAAGGCCATCAGCAGCATAATCGAGAGCAGAAGCAAGCACCAGC
TGAGGTTGAGCCAAATAAGCTTCCTTTCTAGCCTTCTTTTTCTCCCGCTG
CAACCTGAAGTACTCTCGCTTCCTTGCTCTGTAACTGTTGGGATTCTCAG
GCTGCACTTCTCTTGGGTAAACACTTATCTGCTTCCTGTCAGGCCCAAAC
TTCTCAAATTTGACTAGTCCATCAATCAAAGAGAATATTGTATGGTCCTT
GCCAAGCCCCACATTTTTCCCTGGATGGAACTTGGTGCCACGCTGGCGGA
CGATAATTGCGCCGGGCTTGGCGACCTGGTCACCGAAAATCTTGACGCCG
AGCCGCTGTCCCCGCGAATCACGGCCGTTCTTTGTGCTACCGGCTCCCTT
CTTGTGGGCAGATTCGATAGTTAAGGGTAGCGGCGACGTTGGTGGGAGGG
AAACGGTGACGGATTTGGGACACACGGTGAAATCGCCTTTGAGGAAGGAG
GAGGAAGAGCTTGAAGATAAAGAGAGACCCTTAAACGAGCCGATTAGGCT
CGCACTCATTGAAGCTGTTGCCATTTTTCTTCTCTCGGTTT
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