CN185203

Overview
NameCN185203
Unique NameCN185203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_SYNP6 (50S ribosomal protein L27 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.033e-26
Identity = 56/82 (68.29%), Postives = 66/82 (80.49%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GST+NGRDS  QRLGVK FG +V + G+IIVRQRGTKFHPG NVG G D T+F+LIDG+V FE+ G   K++SVYP
Sbjct:    2 AHKKGTGSTRNGRDSNAQRLGVKKFGGEVVRSGSIIVRQRGTKFHPGVNVGRGGDDTLFALIDGVVTFERKGKGGKKVSVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_SYNE7 (50S ribosomal protein L27 OS=Synechococcus elongatus (strain PCC 7942) GN=rpmA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.033e-26
Identity = 56/82 (68.29%), Postives = 66/82 (80.49%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GST+NGRDS  QRLGVK FG +V + G+IIVRQRGTKFHPG NVG G D T+F+LIDG+V FE+ G   K++SVYP
Sbjct:    2 AHKKGTGSTRNGRDSNAQRLGVKKFGGEVVRSGSIIVRQRGTKFHPGVNVGRGGDDTLFALIDGVVTFERKGKGGKKVSVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_PELPD (50S ribosomal protein L27 OS=Pelobacter propionicus (strain DSM 2379) GN=rpmA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.033e-26
Identity = 53/82 (64.63%), Postives = 66/82 (80.49%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKK  GS++NGRDS+GQRLG K FG +  K G II RQRGT+ HPG NVG GKD+T+F+LI+G+V FE+ G DRK++SVYP
Sbjct:    2 AHKKAGGSSRNGRDSKGQRLGCKKFGGETVKAGNIIYRQRGTQIHPGNNVGCGKDYTLFALIEGIVTFERMGRDRKKVSVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_HELHP (50S ribosomal protein L27 OS=Helicobacter hepaticus GN=rpmA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.033e-26
Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GST+N RDS G+RLGVK FG Q  + G IIVRQRGTK HPG NVGLGKDHTI++LIDG+VKF++   +RK++SV P
Sbjct:    2 AHKKGQGSTQNNRDSAGRRLGVKRFGSQFVRAGNIIVRQRGTKVHPGDNVGLGKDHTIYALIDGVVKFQQKDKNRKKVSVIP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_GEOMG (50S ribosomal protein L27 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rpmA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.033e-26
Identity = 54/82 (65.85%), Postives = 66/82 (80.49%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GST+NGRDS  +RLG K +G +  K G II RQRGT+ HPG NVG GKD+T+F+LIDG+VKFE+ G DRK++SVYP
Sbjct:    2 AHKKGVGSTRNGRDSESKRLGCKKYGGENVKAGNIIYRQRGTQIHPGTNVGCGKDYTLFALIDGVVKFERLGRDRKKVSVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CAMFF (50S ribosomal protein L27 OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=rpmA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.033e-26
Identity = 54/82 (65.85%), Postives = 66/82 (80.49%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GST+N RDS G+RLGVK FG +  + G II+RQRGT  HPG NVG+G+DHTIF+L+DG VKFE+   DRK++SVYP
Sbjct:    2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHPGNNVGIGRDHTIFALVDGFVKFERKDKDRKKVSVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_THEYD (50S ribosomal protein L27 OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=rpmA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.268e-26
Identity = 54/82 (65.85%), Postives = 67/82 (81.71%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GS++NGRDS+ +RLGVK FG Q  K G I+VRQRGTKFHPG NVG+G D+T+F+LIDG+VKFE+    R ++SVYP
Sbjct:    2 AHKKGVGSSRNGRDSQAKRLGVKRFGGQFVKAGNILVRQRGTKFHPGANVGVGSDYTLFALIDGIVKFERKDKQRLKVSVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_BACFR (50S ribosomal protein L27 OS=Bacteroides fragilis GN=rpmA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.268e-26
Identity = 52/84 (61.90%), Postives = 68/84 (80.95%), Query Frame = -3
Query:  258 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPRE 509
            AHKKG GS+KNGR+S+ +RLGVKIFG +  K G IIVRQRGT+FHPG+N+G+GKDHT+F+L+DG V F+    DR+ +S+ P E
Sbjct:    2 AHKKGVGSSKNGRESQSKRLGVKIFGGEACKAGNIIVRQRGTEFHPGENIGMGKDHTLFALVDGTVNFKVGREDRRYVSIIPAE 85          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_BACFN (50S ribosomal protein L27 OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=rpmA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.268e-26
Identity = 52/84 (61.90%), Postives = 68/84 (80.95%), Query Frame = -3
Query:  258 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPRE 509
            AHKKG GS+KNGR+S+ +RLGVKIFG +  K G IIVRQRGT+FHPG+N+G+GKDHT+F+L+DG V F+    DR+ +S+ P E
Sbjct:    2 AHKKGVGSSKNGRESQSKRLGVKIFGGEACKAGNIIVRQRGTEFHPGENIGMGKDHTLFALVDGTVNFKVGREDRRYVSIIPAE 85          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_THEEB (50S ribosomal protein L27 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.986e-26
Identity = 55/84 (65.48%), Postives = 66/84 (78.57%), Query Frame = -3
Query:  258 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPRE 509
            AHKKG GST+NGRDS  QRLGVK FG +V K G I+VRQRGTKFHPG NV  G D T+F+ I G+V FE++G +RK++SVYP E
Sbjct:    2 AHKKGTGSTRNGRDSNAQRLGVKRFGGEVVKAGYILVRQRGTKFHPGVNVARGGDDTLFATIAGVVTFERYGKNRKRVSVYPLE 85          
The following BLAST results are available for this feature:
BLAST of CN185203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_SYNP64.033e-2668.2950S ribosomal protein L27 OS=Synechococcus sp. (st... [more]
RL27_SYNE74.033e-2668.2950S ribosomal protein L27 OS=Synechococcus elongat... [more]
RL27_PELPD4.033e-2664.6350S ribosomal protein L27 OS=Pelobacter propionicu... [more]
RL27_HELHP4.033e-2668.2950S ribosomal protein L27 OS=Helicobacter hepaticu... [more]
RL27_GEOMG4.033e-2665.8550S ribosomal protein L27 OS=Geobacter metalliredu... [more]
RL27_CAMFF4.033e-2665.8550S ribosomal protein L27 OS=Campylobacter fetus s... [more]
RL27_THEYD5.268e-2665.8550S ribosomal protein L27 OS=Thermodesulfovibrio y... [more]
RL27_BACFR5.268e-2661.9050S ribosomal protein L27 OS=Bacteroides fragilis ... [more]
RL27_BACFN5.268e-2661.9050S ribosomal protein L27 OS=Bacteroides fragilis ... [more]
RL27_THEEB8.986e-2665.4850S ribosomal protein L27 OS=Thermosynechococcus e... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185203 ID=CN185203; Name=CN185203; organism=Citrus sinensis; type=EST; length=691bp
GAGGCCTATTTCCATTGTGTGACGATAATGGGAAAAAAAAATTCAATAAG
ATACAAGAACTAACAAGTCGAAAAATAATGGGCAGCACTTCAGACTTAGC
AATTGGGAAGGCCATCAGCAGCATAATCGAGAGCAGAAGCAAGCACCAGC
TGAGGTTGAGCCAAATAAGCTTCCTTTCTAGCCTTCTTTTTCTCCCGCTG
CAACCTGAAGTACTCTCGCTTCCTTGCTCTGTAACTGTTGGGATTCTCAG
GCTGCACTTCTCTTGGGTAAACACTTATCTGCTTCCTGTCAGGCCCAAAC
TTCTCAAATTTGACTAGTCCATCAATCAAAGAGAATATTGTATGGTCCTT
GCCAAGCCCCACATTTTTCCCTGGATGGAACTTGGTGCCACGCTGGCGGA
CGATAATTGCGCCGGGCTTGGCGACCTGGTCACCGAAAATCTTGACGCCG
AGCCGCTGTCCCCGCGAATCACGGCCGTTCTTTGTGCTACCGGCTCCCTT
CTTGTGGGCAGATTCGATAGTTAAGGGTAGCGGCGACGTTGGTGGGAGGG
AAACGGTGACGGATTTGGGACACACGGTGAAATCGCCTTTGAGGAAGGAG
GAGGAAGAGCTTGAAGATAAAGAGAGACCCTTAAACGAGCCGATTAGGCT
CGCACTCATTGAAGCTGTTGCCATTTTTCTTCTCTCGGTTT
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