CN185203

Overview
NameCN185203
Unique NameCN185203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_GLOVI (50S ribosomal protein L27 OS=Gloeobacter violaceus GN=rpmA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.986e-26
Identity = 53/82 (64.63%), Postives = 65/82 (79.27%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GST+NGRDS  QRLGVK +G +  K G I++RQRGTK HPG NVG G D T+F+LI+G+V FE+ G DRK++SVYP
Sbjct:    2 AHKKGTGSTRNGRDSNAQRLGVKRYGGERVKAGNILIRQRGTKIHPGANVGRGSDDTLFALIEGIVTFERLGRDRKKVSVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CAMHC (50S ribosomal protein L27 OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=rpmA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.986e-26
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GST+N RDS G+RLGVK FG +  + G II+RQRGT  H G NVG+G DHTIF+LIDG+VKFE+F   RKQ+SVYP
Sbjct:    2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHAGNNVGIGTDHTIFALIDGVVKFERFDKTRKQVSVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_SYNP2 (50S ribosomal protein L27 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rpmA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.174e-25
Identity = 53/84 (63.10%), Postives = 66/84 (78.57%), Query Frame = -3
Query:  258 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPRE 509
            AHKKG GST+NGRDSR QRLGVK +G Q    G+I+VRQRGTK HPG NVG G D T+F+L+DG+VKFE +   R+++SVYP +
Sbjct:    2 AHKKGTGSTRNGRDSRAQRLGVKRYGGQTVTTGSILVRQRGTKVHPGNNVGRGGDDTLFALVDGIVKFEHYKRGRRKVSVYPAD 85          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CAMJR (50S ribosomal protein L27 OS=Campylobacter jejuni (strain RM1221) GN=rpmA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.174e-25
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GST+N RDS G+RLGVK FG +  + G II+RQRGT  H G NVG+GKDHTIF+LIDG VKFE+   DRK++SVYP
Sbjct:    2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHAGNNVGMGKDHTIFALIDGFVKFERKDKDRKKVSVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CAMJJ (50S ribosomal protein L27 OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=rpmA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.174e-25
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GST+N RDS G+RLGVK FG +  + G II+RQRGT  H G NVG+GKDHTIF+LIDG VKFE+   DRK++SVYP
Sbjct:    2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHAGNNVGMGKDHTIFALIDGFVKFERKDKDRKKVSVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CAMJE (50S ribosomal protein L27 OS=Campylobacter jejuni GN=rpmA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.174e-25
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GST+N RDS G+RLGVK FG +  + G II+RQRGT  H G NVG+GKDHTIF+LIDG VKFE+   DRK++SVYP
Sbjct:    2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHAGNNVGMGKDHTIFALIDGFVKFERKDKDRKKVSVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CAMJD (50S ribosomal protein L27 OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=rpmA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.174e-25
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GST+N RDS G+RLGVK FG +  + G II+RQRGT  H G NVG+GKDHTIF+LIDG VKFE+   DRK++SVYP
Sbjct:    2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHAGNNVGMGKDHTIFALIDGFVKFERKDKDRKKVSVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CAMJ8 (50S ribosomal protein L27 OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=rpmA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.174e-25
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GST+N RDS G+RLGVK FG +  + G II+RQRGT  H G NVG+GKDHTIF+LIDG VKFE+   DRK++SVYP
Sbjct:    2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHAGNNVGMGKDHTIFALIDGFVKFERKDKDRKKVSVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CYAP7 (50S ribosomal protein L27 OS=Cyanothece sp. (strain PCC 7424) GN=rpmA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.533e-25
Identity = 58/90 (64.44%), Postives = 69/90 (76.67%), Query Frame = -3
Query:  240 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREVQPENP 509
            AHKKG GST+NGRDS+ +RLGVK +G QV + G I+VRQRGTKFHPG NVG G D T+F+LIDG+VKFE     R++ISVYP  V  E P
Sbjct:    2 AHKKGTGSTRNGRDSQSKRLGVKRYGGQVVRAGNILVRQRGTKFHPGNNVGRGSDDTLFALIDGVVKFEYKTRSRQKISVYP--VPQEEP 89          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CAMC1 (50S ribosomal protein L27 OS=Campylobacter concisus (strain 13826) GN=rpmA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.533e-25
Identity = 54/82 (65.85%), Postives = 65/82 (79.27%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GST+N RDS G+RLGVK FG +  + G II+RQRGT  H G NVGLGKDHTIF+L+DG VKFE+   +RK++SVYP
Sbjct:    2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHAGNNVGLGKDHTIFALVDGFVKFERLDKNRKKVSVYP 83          
The following BLAST results are available for this feature:
BLAST of CN185203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_GLOVI8.986e-2664.6350S ribosomal protein L27 OS=Gloeobacter violaceus... [more]
RL27_CAMHC8.986e-2667.0750S ribosomal protein L27 OS=Campylobacter hominis... [more]
RL27_SYNP21.174e-2563.1050S ribosomal protein L27 OS=Synechococcus sp. (st... [more]
RL27_CAMJR1.174e-2567.0750S ribosomal protein L27 OS=Campylobacter jejuni ... [more]
RL27_CAMJJ1.174e-2567.0750S ribosomal protein L27 OS=Campylobacter jejuni ... [more]
RL27_CAMJE1.174e-2567.0750S ribosomal protein L27 OS=Campylobacter jejuni ... [more]
RL27_CAMJD1.174e-2567.0750S ribosomal protein L27 OS=Campylobacter jejuni ... [more]
RL27_CAMJ81.174e-2567.0750S ribosomal protein L27 OS=Campylobacter jejuni ... [more]
RL27_CYAP71.533e-2564.4450S ribosomal protein L27 OS=Cyanothece sp. (strai... [more]
RL27_CAMC11.533e-2565.8550S ribosomal protein L27 OS=Campylobacter concisu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006P10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185203 ID=CN185203; Name=CN185203; organism=Citrus sinensis; type=EST; length=691bp
GAGGCCTATTTCCATTGTGTGACGATAATGGGAAAAAAAAATTCAATAAG
ATACAAGAACTAACAAGTCGAAAAATAATGGGCAGCACTTCAGACTTAGC
AATTGGGAAGGCCATCAGCAGCATAATCGAGAGCAGAAGCAAGCACCAGC
TGAGGTTGAGCCAAATAAGCTTCCTTTCTAGCCTTCTTTTTCTCCCGCTG
CAACCTGAAGTACTCTCGCTTCCTTGCTCTGTAACTGTTGGGATTCTCAG
GCTGCACTTCTCTTGGGTAAACACTTATCTGCTTCCTGTCAGGCCCAAAC
TTCTCAAATTTGACTAGTCCATCAATCAAAGAGAATATTGTATGGTCCTT
GCCAAGCCCCACATTTTTCCCTGGATGGAACTTGGTGCCACGCTGGCGGA
CGATAATTGCGCCGGGCTTGGCGACCTGGTCACCGAAAATCTTGACGCCG
AGCCGCTGTCCCCGCGAATCACGGCCGTTCTTTGTGCTACCGGCTCCCTT
CTTGTGGGCAGATTCGATAGTTAAGGGTAGCGGCGACGTTGGTGGGAGGG
AAACGGTGACGGATTTGGGACACACGGTGAAATCGCCTTTGAGGAAGGAG
GAGGAAGAGCTTGAAGATAAAGAGAGACCCTTAAACGAGCCGATTAGGCT
CGCACTCATTGAAGCTGTTGCCATTTTTCTTCTCTCGGTTT
back to top