CN185203

Overview
NameCN185203
Unique NameCN185203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_ACAM1 (50S ribosomal protein L27 OS=Acaryochloris marina (strain MBIC 11017) GN=rpmA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.002e-25
Identity = 53/82 (64.63%), Postives = 64/82 (78.05%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GST+NGRDS  QRLGVK +G +V + G II+RQRGTK HPG NVG G D T+F+ IDG+V FE+ G  RK++SVYP
Sbjct:    2 AHKKGTGSTRNGRDSNAQRLGVKRYGGEVVRAGNIIIRQRGTKVHPGNNVGRGSDDTLFATIDGIVTFERKGKSRKKVSVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CYAA5 (50S ribosomal protein L27 OS=Cyanothece sp. (strain ATCC 51142) GN=rpmA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.614e-25
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GST+NGRDSR QRLGVK +G QV K G I++RQRGTK HPG NVG G D T+F+LIDG+V FE     R+++SVYP
Sbjct:    2 AHKKGTGSTRNGRDSRSQRLGVKRYGGQVVKAGNILIRQRGTKVHPGNNVGRGNDDTLFALIDGIVTFEYKTKSRRKVSVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CARHZ (50S ribosomal protein L27 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rpmA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.614e-25
Identity = 53/85 (62.35%), Postives = 67/85 (78.82%), Query Frame = -3
Query:  255 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREV 509
            AHKKG GS+KNGRDS+ +RLGVK +  Q    G+I+VRQRGTKFHPG NVG+G D T+F+ IDG V FE+ G ++KQ+SVYP+ V
Sbjct:    2 AHKKGVGSSKNGRDSKAKRLGVKRYAGQFVTAGSILVRQRGTKFHPGNNVGIGGDDTLFAKIDGYVVFERKGKNKKQVSVYPQNV 86          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CAMC5 (50S ribosomal protein L27 OS=Campylobacter curvus (strain 525.92) GN=rpmA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.614e-25
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GST+N RDS G+RLGVK FG +  + G II+RQRGT  H G NVGLGKDHTIF+LIDG VKFE+   +RK++SVYP
Sbjct:    2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHAGSNVGLGKDHTIFALIDGFVKFERKDKNRKKVSVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_SYNAS (50S ribosomal protein L27 OS=Syntrophus aciditrophicus (strain SB) GN=rpmA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.414e-25
Identity = 52/81 (64.20%), Postives = 65/81 (80.25%), Query Frame = -3
Query:  267 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVY 509
            AHKKG GS++NGRDS  QR GVK++G Q    G+II+RQ GTK HPG NVG+GKD+T+FSLIDG+VKFE+    RK++SVY
Sbjct:    2 AHKKGQGSSRNGRDSNAQRRGVKVYGGQSIHAGSIIIRQLGTKIHPGNNVGMGKDYTLFSLIDGVVKFERLDKKRKKVSVY 82          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_FUSNN (50S ribosomal protein L27 OS=Fusobacterium nucleatum subsp. nucleatum GN=rpmA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.414e-25
Identity = 53/81 (65.43%), Postives = 65/81 (80.25%), Query Frame = -3
Query:  267 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVY 509
            AHKKG GS KNGRDS  + LGVK +  +V K G IIVRQRGTK+H G N+G+GKDHT+F+LIDG VKFE+ G ++KQIS+Y
Sbjct:   11 AHKKGQGSVKNGRDSNPKYLGVKKYDGEVVKAGNIIVRQRGTKYHAGNNMGIGKDHTLFALIDGYVKFERLGKNKKQISIY 91          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_THERP (50S ribosomal protein L27 OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=rpmA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.459e-25
Identity = 51/85 (60.00%), Postives = 67/85 (78.82%), Query Frame = -3
Query:  255 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREV 509
            AHKKG GST+NGRDSR +RLGVK +  Q    G+++VRQRGT F PG+NVG+G+D+T+F+LIDG VKFE    D++++SVYP  V
Sbjct:    2 AHKKGGGSTRNGRDSRAKRLGVKRYDGQFVPAGSVLVRQRGTVFRPGRNVGMGRDYTLFALIDGYVKFEPISRDKRRVSVYPEPV 86          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_LEPBP (50S ribosomal protein L27 OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=rpmA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.459e-25
Identity = 53/83 (63.86%), Postives = 68/83 (81.93%), Query Frame = -3
Query:  261 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPR 509
            A KKG GSTKNGRDS  +RLGVK++G Q A  G IIVRQRGT++ PGKNVG+G+DHT+++L+DG+V FE    +R+QISVYP+
Sbjct:    2 ATKKGGGSTKNGRDSVSKRLGVKVYGGQQAIAGNIIVRQRGTEYKPGKNVGIGRDHTLYALVDGIVTFEHVTKERQQISVYPK 84          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_LEPBA (50S ribosomal protein L27 OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=rpmA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.459e-25
Identity = 53/83 (63.86%), Postives = 68/83 (81.93%), Query Frame = -3
Query:  261 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPR 509
            A KKG GSTKNGRDS  +RLGVK++G Q A  G IIVRQRGT++ PGKNVG+G+DHT+++L+DG+V FE    +R+QISVYP+
Sbjct:    2 ATKKGGGSTKNGRDSVSKRLGVKVYGGQQAIAGNIIVRQRGTEYKPGKNVGIGRDHTLYALVDGIVTFEHVTKERQQISVYPK 84          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CAMLR (50S ribosomal protein L27 OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=rpmA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.459e-25
Identity = 54/82 (65.85%), Postives = 65/82 (79.27%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GST+N RDS G+RLGVK FG +  + G II+RQRGT  H G NVG+GKDHTIF+LIDG VKFE+   +RK++SVYP
Sbjct:    2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHAGNNVGMGKDHTIFALIDGFVKFERKDKNRKKVSVYP 83          
The following BLAST results are available for this feature:
BLAST of CN185203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_ACAM12.002e-2564.6350S ribosomal protein L27 OS=Acaryochloris marina ... [more]
RL27_CYAA52.614e-2565.8550S ribosomal protein L27 OS=Cyanothece sp. (strai... [more]
RL27_CARHZ2.614e-2562.3550S ribosomal protein L27 OS=Carboxydothermus hydr... [more]
RL27_CAMC52.614e-2567.0750S ribosomal protein L27 OS=Campylobacter curvus ... [more]
RL27_SYNAS3.414e-2564.2050S ribosomal protein L27 OS=Syntrophus aciditroph... [more]
RL27_FUSNN3.414e-2565.4350S ribosomal protein L27 OS=Fusobacterium nucleat... [more]
RL27_THERP4.459e-2560.0050S ribosomal protein L27 OS=Thermomicrobium roseu... [more]
RL27_LEPBP4.459e-2563.8650S ribosomal protein L27 OS=Leptospira biflexa se... [more]
RL27_LEPBA4.459e-2563.8650S ribosomal protein L27 OS=Leptospira biflexa se... [more]
RL27_CAMLR4.459e-2565.8550S ribosomal protein L27 OS=Campylobacter lari (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185203 ID=CN185203; Name=CN185203; organism=Citrus sinensis; type=EST; length=691bp
GAGGCCTATTTCCATTGTGTGACGATAATGGGAAAAAAAAATTCAATAAG
ATACAAGAACTAACAAGTCGAAAAATAATGGGCAGCACTTCAGACTTAGC
AATTGGGAAGGCCATCAGCAGCATAATCGAGAGCAGAAGCAAGCACCAGC
TGAGGTTGAGCCAAATAAGCTTCCTTTCTAGCCTTCTTTTTCTCCCGCTG
CAACCTGAAGTACTCTCGCTTCCTTGCTCTGTAACTGTTGGGATTCTCAG
GCTGCACTTCTCTTGGGTAAACACTTATCTGCTTCCTGTCAGGCCCAAAC
TTCTCAAATTTGACTAGTCCATCAATCAAAGAGAATATTGTATGGTCCTT
GCCAAGCCCCACATTTTTCCCTGGATGGAACTTGGTGCCACGCTGGCGGA
CGATAATTGCGCCGGGCTTGGCGACCTGGTCACCGAAAATCTTGACGCCG
AGCCGCTGTCCCCGCGAATCACGGCCGTTCTTTGTGCTACCGGCTCCCTT
CTTGTGGGCAGATTCGATAGTTAAGGGTAGCGGCGACGTTGGTGGGAGGG
AAACGGTGACGGATTTGGGACACACGGTGAAATCGCCTTTGAGGAAGGAG
GAGGAAGAGCTTGAAGATAAAGAGAGACCCTTAAACGAGCCGATTAGGCT
CGCACTCATTGAAGCTGTTGCCATTTTTCTTCTCTCGGTTT
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