CN185203

Overview
NameCN185203
Unique NameCN185203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_BARQU (50S ribosomal protein L27 OS=Bartonella quintana GN=rpmA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.703e-21
Identity = 45/80 (56.25%), Postives = 61/80 (76.25%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISV 509
            AHKK  GS++NGRDS  +RLGVK FG +    G II+RQRGT++HPG NVG+GKDHT+F+L +G+V F++   +R  +SV
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKKFGGETVIAGNIIIRQRGTRWHPGDNVGIGKDHTLFALSNGVVSFQRKANNRSYVSV 81          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_BACST (50S ribosomal protein L27 OS=Bacillus stearothermophilus GN=rpmA PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 8.703e-21
Identity = 48/82 (58.54%), Postives = 60/82 (73.17%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            A KKG GSTK+GRDS  +RLG K    Q    G+I+ RQRGTK HPG NVG G D T+++ IDG+V+FE+ G DRK++SVYP
Sbjct:    2 ASKKGVGSTKDGRDSIAKRLGAKRADGQFVTGGSILYRQRGTKVHPGLNVGRGGDDTLYAKIDGIVRFERLGRDRKRVSVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_VARPS (50S ribosomal protein L27 OS=Variovorax paradoxus (strain S110) GN=rpmA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP-DRKQISVYP 509
            A KKG GST+NGRDS+ + LGVK FG ++   G+IIVRQRGT+FHPG NVG+GKDHT+F+L+DG V F   G  ++  ++V P
Sbjct:    2 AQKKGGGSTRNGRDSKPKMLGVKAFGGELISAGSIIVRQRGTQFHPGVNVGVGKDHTLFALVDGHVSFGVKGALNKHMVNVTP 84          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_TOLAT (50S ribosomal protein L27 OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=rpmA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 49/81 (60.49%), Postives = 60/81 (74.07%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP-DRKQISV 509
            AHKK  GS++NGRDS  +RLGVK FG +    G+IIVRQRGTKFH G NVG GKDHT+F+   G +KFE  GP +RK +S+
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKRFGGESVLAGSIIVRQRGTKFHAGVNVGCGKDHTLFATATGTIKFEVKGPNNRKFVSI 82          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_RHOPT (50S ribosomal protein L27 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = -3
Query:  252 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREVQ 509
            AHKK  GS++NGRDS G+RLGVK FG +   PG II RQRGT++HPG NVG+G DHT+F+ ++G V+F      R  +SV P  +Q
Sbjct:    2 AHKKAGGSSRNGRDSAGKRLGVKAFGGEHVIPGNIIARQRGTQWHPGLNVGMGTDHTLFAKVEGRVEFRAKANGRTYVSVLPIAMQ 87          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_RHOPA (50S ribosomal protein L27 OS=Rhodopseudomonas palustris GN=rpmA PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = -3
Query:  252 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREVQ 509
            AHKK  GS++NGRDS G+RLGVK FG +   PG II RQRGT++HPG NVG+G DHT+F+ ++G V+F      R  +SV P  +Q
Sbjct:    2 AHKKAGGSSRNGRDSAGKRLGVKAFGGEHVIPGNIIARQRGTQWHPGLNVGMGTDHTLFAKVEGRVEFRAKANGRTYVSVLPIAMQ 87          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_METSB (50S ribosomal protein L27 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rpmA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 49/80 (61.25%), Postives = 58/80 (72.50%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISV 509
            AHKK  GS++NGRDS G+RLGVK FG +    G IIVRQRGTK+HPG NVG+G DHT+F+L DG VKF      R  +SV
Sbjct:    2 AHKKAGGSSRNGRDSAGRRLGVKKFGGERVVSGNIIVRQRGTKWHPGANVGIGVDHTLFALADGAVKFLTKDKGRSYVSV 81          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_HAES2 (50S ribosomal protein L27 OS=Haemophilus somnus (strain 2336) GN=rpmA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 51/81 (62.96%), Postives = 59/81 (72.84%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFG-PDRKQISV 509
            A KK  GST+NGRDS  +RLGVK FG +    G+IIVRQRGTKFH G NVG+GKDHT+F+  DG VKFE  G   RK +SV
Sbjct:    2 ATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGSNVGMGKDHTLFATADGKVKFEVKGEKSRKYVSV 82          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_HAES1 (50S ribosomal protein L27 OS=Haemophilus somnus (strain 129Pt) GN=rpmA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 51/81 (62.96%), Postives = 59/81 (72.84%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFG-PDRKQISV 509
            A KK  GST+NGRDS  +RLGVK FG +    G+IIVRQRGTKFH G NVG+GKDHT+F+  DG VKFE  G   RK +SV
Sbjct:    2 ATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGSNVGMGKDHTLFATADGKVKFEVKGEKSRKYVSV 82          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_HAEPS (50S ribosomal protein L27 OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=rpmA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 50/81 (61.73%), Postives = 60/81 (74.07%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFG-PDRKQISV 509
            A KK  GST+NGRDS  +RLGVK FG +    G+IIVRQRGTKFH G NVG+GKDHT+F+  DG VKFE  G  +RK +S+
Sbjct:    2 ATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGSNVGMGKDHTLFATADGKVKFEVKGEKNRKYVSI 82          
The following BLAST results are available for this feature:
BLAST of CN185203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_BARQU8.703e-2156.2550S ribosomal protein L27 OS=Bartonella quintana G... [more]
RL27_BACST8.703e-2158.5450S ribosomal protein L27 OS=Bacillus stearothermo... [more]
RL27_VARPS1.137e-2057.8350S ribosomal protein L27 OS=Variovorax paradoxus ... [more]
RL27_TOLAT1.137e-2060.4950S ribosomal protein L27 OS=Tolumonas auensis (st... [more]
RL27_RHOPT1.137e-2054.6550S ribosomal protein L27 OS=Rhodopseudomonas palu... [more]
RL27_RHOPA1.137e-2054.6550S ribosomal protein L27 OS=Rhodopseudomonas palu... [more]
RL27_METSB1.137e-2061.2550S ribosomal protein L27 OS=Methylocella silvestr... [more]
RL27_HAES21.137e-2062.9650S ribosomal protein L27 OS=Haemophilus somnus (s... [more]
RL27_HAES11.137e-2062.9650S ribosomal protein L27 OS=Haemophilus somnus (s... [more]
RL27_HAEPS1.137e-2061.7350S ribosomal protein L27 OS=Haemophilus parasuis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185203 ID=CN185203; Name=CN185203; organism=Citrus sinensis; type=EST; length=691bp
GAGGCCTATTTCCATTGTGTGACGATAATGGGAAAAAAAAATTCAATAAG
ATACAAGAACTAACAAGTCGAAAAATAATGGGCAGCACTTCAGACTTAGC
AATTGGGAAGGCCATCAGCAGCATAATCGAGAGCAGAAGCAAGCACCAGC
TGAGGTTGAGCCAAATAAGCTTCCTTTCTAGCCTTCTTTTTCTCCCGCTG
CAACCTGAAGTACTCTCGCTTCCTTGCTCTGTAACTGTTGGGATTCTCAG
GCTGCACTTCTCTTGGGTAAACACTTATCTGCTTCCTGTCAGGCCCAAAC
TTCTCAAATTTGACTAGTCCATCAATCAAAGAGAATATTGTATGGTCCTT
GCCAAGCCCCACATTTTTCCCTGGATGGAACTTGGTGCCACGCTGGCGGA
CGATAATTGCGCCGGGCTTGGCGACCTGGTCACCGAAAATCTTGACGCCG
AGCCGCTGTCCCCGCGAATCACGGCCGTTCTTTGTGCTACCGGCTCCCTT
CTTGTGGGCAGATTCGATAGTTAAGGGTAGCGGCGACGTTGGTGGGAGGG
AAACGGTGACGGATTTGGGACACACGGTGAAATCGCCTTTGAGGAAGGAG
GAGGAAGAGCTTGAAGATAAAGAGAGACCCTTAAACGAGCCGATTAGGCT
CGCACTCATTGAAGCTGTTGCCATTTTTCTTCTCTCGGTTT
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