CN185203

Overview
NameCN185203
Unique NameCN185203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_HAEDU (50S ribosomal protein L27 OS=Haemophilus ducreyi GN=rpmA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 50/81 (61.73%), Postives = 60/81 (74.07%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFG-PDRKQISV 509
            A KK  GST+NGRDS  +RLGVK FG +    G+IIVRQRGTKFH G NVG+GKDHT+F+  DG VKFE  G  +RK +S+
Sbjct:    2 ATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGSNVGMGKDHTLFATADGKVKFEVKGEKNRKYVSI 82          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_DELAS (50S ribosomal protein L27 OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 45/68 (66.18%), Postives = 56/68 (82.35%), Query Frame = -3
Query:  306 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 509
            A KKG GST+NGRDS+ + LGVK FG ++   G+IIVRQRGTKFHPG NVG+GKDHT+++L+DG V F
Sbjct:    2 AQKKGGGSTRNGRDSKPKMLGVKAFGGELITAGSIIVRQRGTKFHPGDNVGVGKDHTLYALVDGHVSF 69          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CHLPB (50S ribosomal protein L27 OS=Chlorobium phaeobacteroides (strain BS1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 48/82 (58.54%), Postives = 56/82 (68.29%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GSTKNGRDS  + LG+K  G      G+IIVRQRGT F PG N G+GKDHTIF+L+DG V F     D+K I + P
Sbjct:    2 AHKKGGGSTKNGRDSNPKYLGIKASGGSSVSAGSIIVRQRGTVFKPGNNAGIGKDHTIFALVDGNVHFRNTRNDKKLIDILP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CAUSK (50S ribosomal protein L27 OS=Caulobacter sp. (strain K31) GN=rpmA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 48/80 (60.00%), Postives = 59/80 (73.75%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISV 509
            AHKK  GS+ NGRDS G+RLGVK FG Q    G II+RQRGTKF+PG NVG+GKDHT+F+LI+G V F     +R  ++V
Sbjct:    2 AHKKSGGSSSNGRDSAGRRLGVKKFGGQKVAAGNIIIRQRGTKFYPGANVGMGKDHTLFALIEGAVAFVTKRNNRTYVNV 81          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_BIFLO (50S ribosomal protein L27 OS=Bifidobacterium longum GN=rpmA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 51/80 (63.75%), Postives = 58/80 (72.50%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISV 509
            AHKKGA S++NGRDS  Q LGVK FG +    G IIVRQRGT FHPG NVG+GKDHT+F+L DG VKF     DRK + V
Sbjct:    2 AHKKGASSSRNGRDSNPQYLGVKKFGGEAVVAGNIIVRQRGTNFHPGHNVGMGKDHTLFALTDGSVKF-GVRRDRKVVDV 80          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_BIFLI (50S ribosomal protein L27 OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=rpmA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 51/80 (63.75%), Postives = 58/80 (72.50%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISV 509
            AHKKGA S++NGRDS  Q LGVK FG +    G IIVRQRGT FHPG NVG+GKDHT+F+L DG VKF     DRK + V
Sbjct:    2 AHKKGASSSRNGRDSNPQYLGVKKFGGEAVVAGNIIVRQRGTNFHPGHNVGMGKDHTLFALTDGSVKF-GVRRDRKVVDV 80          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_BIFLD (50S ribosomal protein L27 OS=Bifidobacterium longum (strain DJO10A) GN=rpmA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 51/80 (63.75%), Postives = 58/80 (72.50%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISV 509
            AHKKGA S++NGRDS  Q LGVK FG +    G IIVRQRGT FHPG NVG+GKDHT+F+L DG VKF     DRK + V
Sbjct:    2 AHKKGASSSRNGRDSNPQYLGVKKFGGEAVVAGNIIVRQRGTNFHPGHNVGMGKDHTLFALTDGSVKF-GVRRDRKVVDV 80          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_AZOSE (50S ribosomal protein L27 OS=Azoarcus sp. (strain EbN1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISV 509
            AHKK  GS++NGRDS  +RLGVK +G Q    G IIVRQRGT++HPG+NVG+GKDHT+F+L DG V+F   G  R++  V
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKRYGGQFVLAGNIIVRQRGTEYHPGENVGIGKDHTLFALKDGTVQFTIKGAQRRRTVV 81          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_ANOFW (50S ribosomal protein L27 OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 47/82 (57.32%), Postives = 60/82 (73.17%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            A KKG GSTKNGRDS  +RLG K    Q    G+I+ RQRGTK +PG NVG G D T+++ +DG+V+FE+ G DRK++SVYP
Sbjct:   10 ASKKGVGSTKNGRDSIAKRLGAKRADGQFVTGGSILYRQRGTKIYPGLNVGRGGDDTLYAKVDGIVRFERMGRDRKKVSVYP 91          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_ACTPJ (50S ribosomal protein L27 OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=rpmA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 50/81 (61.73%), Postives = 60/81 (74.07%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFG-PDRKQISV 509
            A KK  GST+NGRDS  +RLGVK FG +    G+IIVRQRGTKFH G NVG+GKDHT+F+  DG VKFE  G  +RK +S+
Sbjct:    2 ATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGNNVGMGKDHTLFATADGKVKFEVKGEKNRKYVSI 82          
The following BLAST results are available for this feature:
BLAST of CN185203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_HAEDU1.137e-2061.7350S ribosomal protein L27 OS=Haemophilus ducreyi G... [more]
RL27_DELAS1.137e-2066.1850S ribosomal protein L27 OS=Delftia acidovorans (... [more]
RL27_CHLPB1.137e-2058.5450S ribosomal protein L27 OS=Chlorobium phaeobacte... [more]
RL27_CAUSK1.137e-2060.0050S ribosomal protein L27 OS=Caulobacter sp. (stra... [more]
RL27_BIFLO1.137e-2063.7550S ribosomal protein L27 OS=Bifidobacterium longu... [more]
RL27_BIFLI1.137e-2063.7550S ribosomal protein L27 OS=Bifidobacterium longu... [more]
RL27_BIFLD1.137e-2063.7550S ribosomal protein L27 OS=Bifidobacterium longu... [more]
RL27_AZOSE1.137e-2058.7550S ribosomal protein L27 OS=Azoarcus sp. (strain ... [more]
RL27_ANOFW1.137e-2057.3250S ribosomal protein L27 OS=Anoxybacillus flavith... [more]
RL27_ACTPJ1.137e-2061.7350S ribosomal protein L27 OS=Actinobacillus pleuro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185203 ID=CN185203; Name=CN185203; organism=Citrus sinensis; type=EST; length=691bp
GAGGCCTATTTCCATTGTGTGACGATAATGGGAAAAAAAAATTCAATAAG
ATACAAGAACTAACAAGTCGAAAAATAATGGGCAGCACTTCAGACTTAGC
AATTGGGAAGGCCATCAGCAGCATAATCGAGAGCAGAAGCAAGCACCAGC
TGAGGTTGAGCCAAATAAGCTTCCTTTCTAGCCTTCTTTTTCTCCCGCTG
CAACCTGAAGTACTCTCGCTTCCTTGCTCTGTAACTGTTGGGATTCTCAG
GCTGCACTTCTCTTGGGTAAACACTTATCTGCTTCCTGTCAGGCCCAAAC
TTCTCAAATTTGACTAGTCCATCAATCAAAGAGAATATTGTATGGTCCTT
GCCAAGCCCCACATTTTTCCCTGGATGGAACTTGGTGCCACGCTGGCGGA
CGATAATTGCGCCGGGCTTGGCGACCTGGTCACCGAAAATCTTGACGCCG
AGCCGCTGTCCCCGCGAATCACGGCCGTTCTTTGTGCTACCGGCTCCCTT
CTTGTGGGCAGATTCGATAGTTAAGGGTAGCGGCGACGTTGGTGGGAGGG
AAACGGTGACGGATTTGGGACACACGGTGAAATCGCCTTTGAGGAAGGAG
GAGGAAGAGCTTGAAGATAAAGAGAGACCCTTAAACGAGCCGATTAGGCT
CGCACTCATTGAAGCTGTTGCCATTTTTCTTCTCTCGGTTT
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