CN185203

Overview
NameCN185203
Unique NameCN185203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_BACV8 (50S ribosomal protein L27 OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=rpmA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.459e-25
Identity = 52/82 (63.41%), Postives = 66/82 (80.49%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GS+KNGR+S  +RLGVKIFG Q  K G IIVRQRGT+FHPG+N+G+G+DHT+F+L+DG V F+    DR+ +SV P
Sbjct:    2 AHKKGVGSSKNGRESASKRLGVKIFGGQACKAGNIIVRQRGTEFHPGENIGMGRDHTLFALVDGTVCFKVGRNDRRSVSVVP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_ARCB4 (50S ribosomal protein L27 OS=Arcobacter butzleri (strain RM4018) GN=rpmA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.459e-25
Identity = 53/81 (65.43%), Postives = 68/81 (83.95%), Query Frame = -3
Query:  267 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVY 509
            AHKKG GST+N RDS G+RLGVK +G +V + G II+RQRGT+ H G+NVG+GKDHTI+SLIDG+VKFE+   +RK++SVY
Sbjct:    2 AHKKGQGSTQNNRDSAGRRLGVKKYGGEVVRAGNIIIRQRGTRVHLGQNVGMGKDHTIYSLIDGVVKFEQKDKNRKKVSVY 82          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_SYNY3 (50S ribosomal protein L27 OS=Synechocystis sp. (strain PCC 6803) GN=rpmA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.824e-25
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GST+NGRDS  QRLGVK +G Q    G+IIVRQRGT+ HPG NVG GKD T+F+LIDG+VKFE     R+++SVYP
Sbjct:    2 AHKKGTGSTRNGRDSNAQRLGVKRYGGQTVTAGSIIVRQRGTQVHPGNNVGRGKDDTLFALIDGVVKFEHKTRSRRKVSVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_SYNWW (50S ribosomal protein L27 OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=rpmA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.824e-25
Identity = 53/84 (63.10%), Postives = 67/84 (79.76%), Query Frame = -3
Query:  258 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPRE 509
            AHKKG GS+KNGRDS+ +RLGVK +  Q+   G I+VRQRGTK HPG+NV +G D T+F++IDG VKFE+ G D+KQ+SVYP E
Sbjct:   10 AHKKGVGSSKNGRDSQSKRLGVKRYDGQIVTAGNILVRQRGTKIHPGQNVMIGGDDTLFAIIDGRVKFERKGRDKKQVSVYPLE 93          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_SYNJB (50S ribosomal protein L27 OS=Synechococcus sp. GN=rpmA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.824e-25
Identity = 51/85 (60.00%), Postives = 68/85 (80.00%), Query Frame = -3
Query:  255 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREV 509
            AHKKG GST+NGRDS  +RLGVK +G ++  PG I+VRQRGTKFHPG NV +G D T++S++ G+V FE++G  R+++SVYP EV
Sbjct:    2 AHKKGTGSTRNGRDSNAKRLGVKRYGGELVHPGHILVRQRGTKFHPGVNVRIGGDDTLYSVVTGIVTFERYGKWRQKVSVYPAEV 86          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_BDEBA (50S ribosomal protein L27 OS=Bdellovibrio bacteriovorus GN=rpmA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.824e-25
Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = -3
Query:  255 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREV 509
            A KK  GSTKNGRDS+ +RLGVK FG +   PG IIVRQRGTKFH G NV +G+D+TI+S+++GLVKFE+F  +R ++SVYP+ V
Sbjct:    2 ASKKAGGSTKNGRDSQSKRLGVKRFGGEKVLPGTIIVRQRGTKFHLGNNVKMGRDYTIYSVVEGLVKFERFSKERFKVSVYPKAV 86          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_SULDN (50S ribosomal protein L27 OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=rpmA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.607e-25
Identity = 52/82 (63.41%), Postives = 65/82 (79.27%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GST+N RDS G+RLGVK +G +V  PG II+RQRGTK HPGKNVG+GKDHTIF+L+ G+V F +    R+Q+S+ P
Sbjct:    2 AHKKGQGSTQNNRDSAGRRLGVKKYGGEVVIPGNIIIRQRGTKIHPGKNVGMGKDHTIFALVAGVVTFHRKDKKRQQVSIVP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_HELPY (50S ribosomal protein L27 OS=Helicobacter pylori GN=rpmA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.607e-25
Identity = 53/80 (66.25%), Postives = 65/80 (81.25%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISV 509
            AHKKG GST+N RDS G+RLGVK FG +  + G IIVRQRGTK HPG NVG+GKDHT+++LIDG+VKFE    +RK++SV
Sbjct:    2 AHKKGQGSTQNNRDSAGRRLGVKKFGSEFVRAGNIIVRQRGTKMHPGNNVGMGKDHTLYALIDGVVKFEHKDRNRKKVSV 81          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_HELPS (50S ribosomal protein L27 OS=Helicobacter pylori (strain Shi470) GN=rpmA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.607e-25
Identity = 53/80 (66.25%), Postives = 65/80 (81.25%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISV 509
            AHKKG GST+N RDS G+RLGVK FG +  + G IIVRQRGTK HPG NVG+GKDHT+++LIDG+VKFE    +RK++SV
Sbjct:    2 AHKKGQGSTQNNRDSAGRRLGVKKFGSEFVRAGNIIVRQRGTKMHPGNNVGMGKDHTLYALIDGVVKFEHKDRNRKKVSV 81          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_HELPH (50S ribosomal protein L27 OS=Helicobacter pylori (strain HPAG1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.607e-25
Identity = 53/80 (66.25%), Postives = 65/80 (81.25%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISV 509
            AHKKG GST+N RDS G+RLGVK FG +  + G IIVRQRGTK HPG NVG+GKDHT+++LIDG+VKFE    +RK++SV
Sbjct:    2 AHKKGQGSTQNNRDSAGRRLGVKKFGSEFVRAGNIIVRQRGTKMHPGNNVGMGKDHTLYALIDGVVKFEHKDRNRKKVSV 81          
The following BLAST results are available for this feature:
BLAST of CN185203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_BACV84.459e-2563.4150S ribosomal protein L27 OS=Bacteroides vulgatus ... [more]
RL27_ARCB44.459e-2565.4350S ribosomal protein L27 OS=Arcobacter butzleri (... [more]
RL27_SYNY35.824e-2565.8550S ribosomal protein L27 OS=Synechocystis sp. (st... [more]
RL27_SYNWW5.824e-2563.1050S ribosomal protein L27 OS=Syntrophomonas wolfei... [more]
RL27_SYNJB5.824e-2560.0050S ribosomal protein L27 OS=Synechococcus sp. GN=... [more]
RL27_BDEBA5.824e-2562.3550S ribosomal protein L27 OS=Bdellovibrio bacterio... [more]
RL27_SULDN7.607e-2563.4150S ribosomal protein L27 OS=Sulfurimonas denitrif... [more]
RL27_HELPY7.607e-2566.2550S ribosomal protein L27 OS=Helicobacter pylori G... [more]
RL27_HELPS7.607e-2566.2550S ribosomal protein L27 OS=Helicobacter pylori (... [more]
RL27_HELPH7.607e-2566.2550S ribosomal protein L27 OS=Helicobacter pylori (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006P10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185203 ID=CN185203; Name=CN185203; organism=Citrus sinensis; type=EST; length=691bp
GAGGCCTATTTCCATTGTGTGACGATAATGGGAAAAAAAAATTCAATAAG
ATACAAGAACTAACAAGTCGAAAAATAATGGGCAGCACTTCAGACTTAGC
AATTGGGAAGGCCATCAGCAGCATAATCGAGAGCAGAAGCAAGCACCAGC
TGAGGTTGAGCCAAATAAGCTTCCTTTCTAGCCTTCTTTTTCTCCCGCTG
CAACCTGAAGTACTCTCGCTTCCTTGCTCTGTAACTGTTGGGATTCTCAG
GCTGCACTTCTCTTGGGTAAACACTTATCTGCTTCCTGTCAGGCCCAAAC
TTCTCAAATTTGACTAGTCCATCAATCAAAGAGAATATTGTATGGTCCTT
GCCAAGCCCCACATTTTTCCCTGGATGGAACTTGGTGCCACGCTGGCGGA
CGATAATTGCGCCGGGCTTGGCGACCTGGTCACCGAAAATCTTGACGCCG
AGCCGCTGTCCCCGCGAATCACGGCCGTTCTTTGTGCTACCGGCTCCCTT
CTTGTGGGCAGATTCGATAGTTAAGGGTAGCGGCGACGTTGGTGGGAGGG
AAACGGTGACGGATTTGGGACACACGGTGAAATCGCCTTTGAGGAAGGAG
GAGGAAGAGCTTGAAGATAAAGAGAGACCCTTAAACGAGCCGATTAGGCT
CGCACTCATTGAAGCTGTTGCCATTTTTCTTCTCTCGGTTT
back to top