CN185203

Overview
NameCN185203
Unique NameCN185203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_HELPG (50S ribosomal protein L27 OS=Helicobacter pylori (strain G27) GN=rpmA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.607e-25
Identity = 53/80 (66.25%), Postives = 65/80 (81.25%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISV 509
            AHKKG GST+N RDS G+RLGVK FG +  + G IIVRQRGTK HPG NVG+GKDHT+++LIDG+VKFE    +RK++SV
Sbjct:    2 AHKKGQGSTQNNRDSAGRRLGVKKFGSEFVRAGNIIVRQRGTKMHPGNNVGMGKDHTLYALIDGVVKFEHKDRNRKKVSV 81          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_HELP2 (50S ribosomal protein L27 OS=Helicobacter pylori (strain P12) GN=rpmA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.607e-25
Identity = 53/80 (66.25%), Postives = 65/80 (81.25%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISV 509
            AHKKG GST+N RDS G+RLGVK FG +  + G IIVRQRGTK HPG NVG+GKDHT+++LIDG+VKFE    +RK++SV
Sbjct:    2 AHKKGQGSTQNNRDSAGRRLGVKKFGSEFVRAGNIIVRQRGTKMHPGNNVGMGKDHTLYALIDGVVKFEHKDRNRKKVSV 81          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_DESHY (50S ribosomal protein L27 OS=Desulfitobacterium hafniense (strain Y51) GN=rpmA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.607e-25
Identity = 55/82 (67.07%), Postives = 62/82 (75.61%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GS++NGRDS  QRLGVK    Q    G IIVRQRGTKFHPGKN GLGKD T+F+ IDG VKFE+    RKQ+S+YP
Sbjct:   10 AHKKGVGSSRNGRDSNAQRLGVKRGDGQFVTAGNIIVRQRGTKFHPGKNCGLGKDDTLFATIDGYVKFERKDRSRKQVSIYP 91          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_DESHD (50S ribosomal protein L27 OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=rpmA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.607e-25
Identity = 55/82 (67.07%), Postives = 62/82 (75.61%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GS++NGRDS  QRLGVK    Q    G IIVRQRGTKFHPGKN GLGKD T+F+ IDG VKFE+    RKQ+S+YP
Sbjct:   10 AHKKGVGSSRNGRDSNAQRLGVKRGDGQFVTAGNIIVRQRGTKFHPGKNCGLGKDDTLFATIDGYVKFERKDRSRKQVSIYP 91          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_ROSCS (50S ribosomal protein L27 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=rpmA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.935e-25
Identity = 54/84 (64.29%), Postives = 67/84 (79.76%), Query Frame = -3
Query:  258 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPRE 509
            AHKKG GS++NGRDS  + LGVK FG +  KPG IIVRQRGTKF PG NVGLG+D+TI+SLIDG+V FE+   ++K++SVY  E
Sbjct:    2 AHKKGVGSSRNGRDSNPKMLGVKRFGGERVKPGMIIVRQRGTKFKPGANVGLGRDYTIYSLIDGVVTFEQHSRNQKRVSVYAAE 85          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_HELPJ (50S ribosomal protein L27 OS=Helicobacter pylori J99 GN=rpmA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.935e-25
Identity = 53/80 (66.25%), Postives = 64/80 (80.00%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISV 509
            AHKKG GST+N RDS G+RLGVK FG +  + G IIVRQRGTK HPG NVG+GKDHT+++LIDG+VKFE     RK++SV
Sbjct:    2 AHKKGQGSTQNNRDSAGRRLGVKKFGSEFVRAGNIIVRQRGTKIHPGNNVGMGKDHTLYALIDGVVKFEHKDRSRKKVSV 81          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_PELCD (50S ribosomal protein L27 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.298e-24
Identity = 51/81 (62.96%), Postives = 65/81 (80.25%), Query Frame = -3
Query:  267 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVY 509
            AHKK  GS+KNGRDS G+RLGVK FG Q    G+I+VRQRGT  HPG NVG GKD+T+++L+DG+V FE+ G D+K++SVY
Sbjct:    2 AHKKAGGSSKNGRDSAGKRLGVKRFGGQQVTAGSILVRQRGTTIHPGANVGCGKDYTLYALVDGVVSFERKGKDKKKVSVY 82          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CLOB8 (50S ribosomal protein L27 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rpmA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.298e-24
Identity = 53/86 (61.63%), Postives = 66/86 (76.74%), Query Frame = -3
Query:  252 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREVQ 509
            AHKKG GS+KNGRDS  +RLGVK    Q    G I+VRQRGTK HPG+NVG GKD T+F+ +DG+VKFE+ G D+K+ SVYP +V+
Sbjct:   10 AHKKGVGSSKNGRDSESKRLGVKSADGQFVLAGNILVRQRGTKIHPGENVGKGKDDTLFAKVDGVVKFERLGRDKKRASVYPVDVE 95          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_SYNFM (50S ribosomal protein L27 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.695e-24
Identity = 53/86 (61.63%), Postives = 66/86 (76.74%), Query Frame = -3
Query:  252 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREVQ 509
            AHKK  GS++NGRDS GQR GVK +G +  + G I+VRQ GTKFHPGKNVGLG+D+T+F++IDG+V FE     R+QISVYP   Q
Sbjct:    2 AHKKAGGSSRNGRDSAGQRRGVKRYGGEFVRAGNILVRQLGTKFHPGKNVGLGRDYTLFAMIDGIVAFEYKDKTRQQISVYPIPAQ 87          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CYAP8 (50S ribosomal protein L27 OS=Cyanothece sp. (strain PCC 8801) GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.695e-24
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GST+NGRDSR QRLGVK +G QV K G I+VRQRGTK +PG NVG G D T+F+LIDG+V FE     +K++SVYP
Sbjct:    2 AHKKGTGSTRNGRDSRAQRLGVKRYGGQVVKAGNILVRQRGTKVYPGNNVGRGSDDTLFALIDGIVTFEYKTRSQKKVSVYP 83          
The following BLAST results are available for this feature:
BLAST of CN185203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_HELPG7.607e-2566.2550S ribosomal protein L27 OS=Helicobacter pylori (... [more]
RL27_HELP27.607e-2566.2550S ribosomal protein L27 OS=Helicobacter pylori (... [more]
RL27_DESHY7.607e-2567.0750S ribosomal protein L27 OS=Desulfitobacterium ha... [more]
RL27_DESHD7.607e-2567.0750S ribosomal protein L27 OS=Desulfitobacterium ha... [more]
RL27_ROSCS9.935e-2564.2950S ribosomal protein L27 OS=Roseiflexus castenhol... [more]
RL27_HELPJ9.935e-2566.2550S ribosomal protein L27 OS=Helicobacter pylori J... [more]
RL27_PELCD1.298e-2462.9650S ribosomal protein L27 OS=Pelobacter carbinolic... [more]
RL27_CLOB81.298e-2461.6350S ribosomal protein L27 OS=Clostridium beijerinc... [more]
RL27_SYNFM1.695e-2461.6350S ribosomal protein L27 OS=Syntrophobacter fumar... [more]
RL27_CYAP81.695e-2465.8550S ribosomal protein L27 OS=Cyanothece sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185203 ID=CN185203; Name=CN185203; organism=Citrus sinensis; type=EST; length=691bp
GAGGCCTATTTCCATTGTGTGACGATAATGGGAAAAAAAAATTCAATAAG
ATACAAGAACTAACAAGTCGAAAAATAATGGGCAGCACTTCAGACTTAGC
AATTGGGAAGGCCATCAGCAGCATAATCGAGAGCAGAAGCAAGCACCAGC
TGAGGTTGAGCCAAATAAGCTTCCTTTCTAGCCTTCTTTTTCTCCCGCTG
CAACCTGAAGTACTCTCGCTTCCTTGCTCTGTAACTGTTGGGATTCTCAG
GCTGCACTTCTCTTGGGTAAACACTTATCTGCTTCCTGTCAGGCCCAAAC
TTCTCAAATTTGACTAGTCCATCAATCAAAGAGAATATTGTATGGTCCTT
GCCAAGCCCCACATTTTTCCCTGGATGGAACTTGGTGCCACGCTGGCGGA
CGATAATTGCGCCGGGCTTGGCGACCTGGTCACCGAAAATCTTGACGCCG
AGCCGCTGTCCCCGCGAATCACGGCCGTTCTTTGTGCTACCGGCTCCCTT
CTTGTGGGCAGATTCGATAGTTAAGGGTAGCGGCGACGTTGGTGGGAGGG
AAACGGTGACGGATTTGGGACACACGGTGAAATCGCCTTTGAGGAAGGAG
GAGGAAGAGCTTGAAGATAAAGAGAGACCCTTAAACGAGCCGATTAGGCT
CGCACTCATTGAAGCTGTTGCCATTTTTCTTCTCTCGGTTT
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