CN185203

Overview
NameCN185203
Unique NameCN185203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CLOTH (50S ribosomal protein L27 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.695e-24
Identity = 53/82 (64.63%), Postives = 62/82 (75.61%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GST+NGRDS  +RLGVK    Q  K G I+VRQRGTK HPG NVG GKD T+F+L+DG VKF + G DRKQ+S+ P
Sbjct:   10 AHKKGVGSTRNGRDSESKRLGVKRGDGQFVKAGNILVRQRGTKIHPGLNVGKGKDDTLFALVDGRVKFSRLGKDRKQVSIIP 91          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CLOBA (50S ribosomal protein L27 OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.695e-24
Identity = 54/86 (62.79%), Postives = 65/86 (75.58%), Query Frame = -3
Query:  252 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREVQ 509
            AHKKG GS+KNGRDS  +RLGVK    +    G IIVRQRGTK HPG NVG GKD T+F+ IDG+VKFE+ G D+K+ SVYP +V+
Sbjct:   10 AHKKGVGSSKNGRDSESKRLGVKSTDGEFVLAGNIIVRQRGTKIHPGNNVGRGKDDTLFAKIDGVVKFERVGKDKKKASVYPVDVE 95          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_SYNJA (50S ribosomal protein L27 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.213e-24
Identity = 52/84 (61.90%), Postives = 65/84 (77.38%), Query Frame = -3
Query:  258 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPRE 509
            AHKKG GST+NGRDS  +RLGVK FG ++  PG I+VRQRGTKFHPG NV  G D T+F++  G+V FE++G  RK++SVYP E
Sbjct:    2 AHKKGTGSTRNGRDSNAKRLGVKCFGGELVHPGYILVRQRGTKFHPGVNVRRGGDDTLFAVATGIVTFERYGKWRKKVSVYPVE 85          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_LEPIN (50S ribosomal protein L27 OS=Leptospira interrogans GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.213e-24
Identity = 54/82 (65.85%), Postives = 62/82 (75.61%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GS+KNGRDS  QRLGVK FG +    G I+VRQRGTKF PG NVGLGKDHT+F+L+ G VKFE     + Q+SVYP
Sbjct:    2 AHKKGGGSSKNGRDSNSQRLGVKRFGGESVLAGNILVRQRGTKFRPGNNVGLGKDHTLFALVTGKVKFEMVTKLKMQVSVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_LEPIC (50S ribosomal protein L27 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.213e-24
Identity = 54/82 (65.85%), Postives = 62/82 (75.61%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GS+KNGRDS  QRLGVK FG +    G I+VRQRGTKF PG NVGLGKDHT+F+L+ G VKFE     + Q+SVYP
Sbjct:    2 AHKKGGGSSKNGRDSNSQRLGVKRFGGESVLAGNILVRQRGTKFRPGNNVGLGKDHTLFALVTGKVKFEMVTKLKMQVSVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_LEPBL (50S ribosomal protein L27 OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.213e-24
Identity = 54/82 (65.85%), Postives = 62/82 (75.61%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GS+KNGRDS  QRLGVK FG +    G I+VRQRGTKF PG NVGLGKDHT+F+L+ G VKFE     + Q+SVYP
Sbjct:    2 AHKKGGGSSKNGRDSNSQRLGVKRFGGESVLAGNILVRQRGTKFRPGNNVGLGKDHTLFALVTGKVKFEMVTKLKMQVSVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_LEPBJ (50S ribosomal protein L27 OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.213e-24
Identity = 54/82 (65.85%), Postives = 62/82 (75.61%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GS+KNGRDS  QRLGVK FG +    G I+VRQRGTKF PG NVGLGKDHT+F+L+ G VKFE     + Q+SVYP
Sbjct:    2 AHKKGGGSSKNGRDSNSQRLGVKRFGGESVLAGNILVRQRGTKFRPGNNVGLGKDHTLFALVTGKVKFEMVTKLKMQVSVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_HELMI (50S ribosomal protein L27 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.891e-24
Identity = 53/81 (65.43%), Postives = 63/81 (77.78%), Query Frame = -3
Query:  267 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVY 509
            AHKKG GS++NGRDS  +RLGVK    Q    G I+VRQRGTK HPG NVGLG D T+F+LIDG+VKFE+ G D+KQ+SVY
Sbjct:   10 AHKKGVGSSRNGRDSEAKRLGVKRSDGQAVLSGNILVRQRGTKIHPGNNVGLGSDDTLFALIDGVVKFERKGRDKKQVSVY 90          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_DESPS (50S ribosomal protein L27 OS=Desulfotalea psychrophila GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.891e-24
Identity = 50/82 (60.98%), Postives = 65/82 (79.27%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKK  GS++NGRDS GQR GVK FG +  + G I++RQ GTK HPG NVG G+D+T+F+ IDG+VKFE FG ++K++SVYP
Sbjct:    2 AHKKAGGSSRNGRDSAGQRRGVKKFGGEPVRSGNILIRQLGTKVHPGTNVGCGRDYTLFAKIDGVVKFEDFGKNKKRVSVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CLOK5 (50S ribosomal protein L27 OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.891e-24
Identity = 53/86 (61.63%), Postives = 64/86 (74.42%), Query Frame = -3
Query:  252 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREVQ 509
            AHKKG GS+KNGRDS  +RLG K    Q    G I+VRQRGTK HPGKNVG G D T+FS IDG+V++E+FG  +K+ SVYP EV+
Sbjct:   10 AHKKGMGSSKNGRDSESKRLGTKSADGQFVLAGNILVRQRGTKIHPGKNVGRGSDDTLFSKIDGIVRYERFGKTKKKASVYPLEVE 95          
The following BLAST results are available for this feature:
BLAST of CN185203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_CLOTH1.695e-2464.6350S ribosomal protein L27 OS=Clostridium thermocel... [more]
RL27_CLOBA1.695e-2462.7950S ribosomal protein L27 OS=Clostridium botulinum... [more]
RL27_SYNJA2.213e-2461.9050S ribosomal protein L27 OS=Synechococcus sp. (st... [more]
RL27_LEPIN2.213e-2465.8550S ribosomal protein L27 OS=Leptospira interrogan... [more]
RL27_LEPIC2.213e-2465.8550S ribosomal protein L27 OS=Leptospira interrogan... [more]
RL27_LEPBL2.213e-2465.8550S ribosomal protein L27 OS=Leptospira borgpeters... [more]
RL27_LEPBJ2.213e-2465.8550S ribosomal protein L27 OS=Leptospira borgpeters... [more]
RL27_HELMI2.891e-2465.4350S ribosomal protein L27 OS=Heliobacterium modest... [more]
RL27_DESPS2.891e-2460.9850S ribosomal protein L27 OS=Desulfotalea psychrop... [more]
RL27_CLOK52.891e-2461.6350S ribosomal protein L27 OS=Clostridium kluyveri ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185203 ID=CN185203; Name=CN185203; organism=Citrus sinensis; type=EST; length=691bp
GAGGCCTATTTCCATTGTGTGACGATAATGGGAAAAAAAAATTCAATAAG
ATACAAGAACTAACAAGTCGAAAAATAATGGGCAGCACTTCAGACTTAGC
AATTGGGAAGGCCATCAGCAGCATAATCGAGAGCAGAAGCAAGCACCAGC
TGAGGTTGAGCCAAATAAGCTTCCTTTCTAGCCTTCTTTTTCTCCCGCTG
CAACCTGAAGTACTCTCGCTTCCTTGCTCTGTAACTGTTGGGATTCTCAG
GCTGCACTTCTCTTGGGTAAACACTTATCTGCTTCCTGTCAGGCCCAAAC
TTCTCAAATTTGACTAGTCCATCAATCAAAGAGAATATTGTATGGTCCTT
GCCAAGCCCCACATTTTTCCCTGGATGGAACTTGGTGCCACGCTGGCGGA
CGATAATTGCGCCGGGCTTGGCGACCTGGTCACCGAAAATCTTGACGCCG
AGCCGCTGTCCCCGCGAATCACGGCCGTTCTTTGTGCTACCGGCTCCCTT
CTTGTGGGCAGATTCGATAGTTAAGGGTAGCGGCGACGTTGGTGGGAGGG
AAACGGTGACGGATTTGGGACACACGGTGAAATCGCCTTTGAGGAAGGAG
GAGGAAGAGCTTGAAGATAAAGAGAGACCCTTAAACGAGCCGATTAGGCT
CGCACTCATTGAAGCTGTTGCCATTTTTCTTCTCTCGGTTT
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