CN185203

Overview
NameCN185203
Unique NameCN185203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CLOK1 (50S ribosomal protein L27 OS=Clostridium kluyveri (strain NBRC 12016) GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.891e-24
Identity = 53/86 (61.63%), Postives = 64/86 (74.42%), Query Frame = -3
Query:  252 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREVQ 509
            AHKKG GS+KNGRDS  +RLG K    Q    G I+VRQRGTK HPGKNVG G D T+FS IDG+V++E+FG  +K+ SVYP EV+
Sbjct:   10 AHKKGMGSSKNGRDSESKRLGTKSADGQFVLAGNILVRQRGTKIHPGKNVGRGSDDTLFSKIDGIVRYERFGKTKKKASVYPLEVE 95          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CLOBB (50S ribosomal protein L27 OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.891e-24
Identity = 54/86 (62.79%), Postives = 64/86 (74.42%), Query Frame = -3
Query:  252 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREVQ 509
            AHKKG GS+KNGRDS  +RLGVK    +    G IIVRQRGTK HPG NVG GKD T+F+ IDG+VKFE+ G D+K+ SVYP  V+
Sbjct:   10 AHKKGVGSSKNGRDSESKRLGVKSTDGEFVLAGNIIVRQRGTKIHPGNNVGRGKDDTLFAKIDGVVKFERVGKDKKKASVYPVNVE 95          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_BAUCH (50S ribosomal protein L27 OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.891e-24
Identity = 53/80 (66.25%), Postives = 63/80 (78.75%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISV 509
            AHKK  GST+NGRDS  +RLGVKIFG Q+AK G+II+RQRGTKFHPG NVG GKDHT+F+L  G V F+    +RK IS+
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKIFGHQIAKAGSIIIRQRGTKFHPGTNVGCGKDHTLFALTKGKVHFQTKKGNRKFISI 81          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_THETN (50S ribosomal protein L27 OS=Thermoanaerobacter tengcongensis GN=rpmA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.775e-24
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GS++NGRDS  +RLGVK    Q    G I+VRQRGTK HPG NVG+GKD T+F+LIDG V FE+ G D+KQ+SVYP
Sbjct:    7 AHKKGVGSSRNGRDSESKRLGVKRSDGQFVLAGNILVRQRGTKIHPGANVGIGKDDTLFALIDGYVVFERKGRDKKQVSVYP 88          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_SULNB (50S ribosomal protein L27 OS=Sulfurovum sp. (strain NBC37-1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.775e-24
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GST+N RDS G+RLGVK FG +   PG II+RQRGTK HPG  VG+GKDHTIF++++G+VKFE     +K++SV P
Sbjct:    2 AHKKGQGSTQNNRDSAGRRLGVKKFGGEKVIPGNIIIRQRGTKVHPGNGVGMGKDHTIFAMVEGVVKFENRSRSQKRVSVVP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_HELAH (50S ribosomal protein L27 OS=Helicobacter acinonychis (strain Sheeba) GN=rpmA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.775e-24
Identity = 52/80 (65.00%), Postives = 63/80 (78.75%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISV 509
            AHKKG GST+N RDS G+RLGVK FG +  + G IIVRQRGTK HPG NVG+GKDHT+++L DG+VKFE     RK++SV
Sbjct:    2 AHKKGQGSTQNNRDSAGRRLGVKKFGSEFVRAGNIIVRQRGTKMHPGNNVGMGKDHTLYALTDGVVKFEYKDKSRKKVSV 81          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_THEPX (50S ribosomal protein L27 OS=Thermoanaerobacter sp. (strain X514) GN=rpmA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.931e-24
Identity = 54/89 (60.67%), Postives = 64/89 (71.91%), Query Frame = -3
Query:  243 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREVQPEN 509
            AHKKG GS++NGRDS  +RLGVK    Q    G I+VRQRGTK HPG NVG GKD T+F+LIDG V FE+ G D+KQ+SVYP     +N
Sbjct:    7 AHKKGVGSSRNGRDSESKRLGVKRADGQFVLAGNILVRQRGTKIHPGVNVGKGKDDTLFALIDGYVTFERKGRDKKQVSVYPERKVAQN 95          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_THEP3 (50S ribosomal protein L27 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rpmA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.931e-24
Identity = 54/89 (60.67%), Postives = 64/89 (71.91%), Query Frame = -3
Query:  243 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREVQPEN 509
            AHKKG GS++NGRDS  +RLGVK    Q    G I+VRQRGTK HPG NVG GKD T+F+LIDG V FE+ G D+KQ+SVYP     +N
Sbjct:    7 AHKKGVGSSRNGRDSESKRLGVKRADGQFVLAGNILVRQRGTKIHPGVNVGKGKDDTLFALIDGYVTFERKGRDKKQVSVYPERKVAQN 95          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CYTH3 (50S ribosomal protein L27 OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=rpmA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.931e-24
Identity = 52/82 (63.41%), Postives = 64/82 (78.05%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GS++NGR+S  +RLGVK+FG Q A  G IIVRQRGT+ HPG+NVG+GKDHT+F+L DG+V F K   DR  +SV P
Sbjct:    2 AHKKGVGSSRNGRESHSKRLGVKLFGGQAAIAGNIIVRQRGTQHHPGENVGIGKDHTLFALTDGVVTFRKGRQDRSFVSVLP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CHRSD (50S ribosomal protein L27 OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=rpmA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.931e-24
Identity = 54/81 (66.67%), Postives = 65/81 (80.25%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP-DRKQISV 509
            AHKK AGS++NGRDS  +RLGVK+FG Q A  G IIVRQRGTKFH G  VG+GKDHT+F+L DG++KFE  GP +RK +SV
Sbjct:    2 AHKKAAGSSRNGRDSESKRLGVKLFGGQAATAGNIIVRQRGTKFHAGSGVGIGKDHTLFALNDGVIKFETKGPKNRKFVSV 82          
The following BLAST results are available for this feature:
BLAST of CN185203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_CLOK12.891e-2461.6350S ribosomal protein L27 OS=Clostridium kluyveri ... [more]
RL27_CLOBB2.891e-2462.7950S ribosomal protein L27 OS=Clostridium botulinum... [more]
RL27_BAUCH2.891e-2466.2550S ribosomal protein L27 OS=Baumannia cicadellini... [more]
RL27_THETN3.775e-2464.6350S ribosomal protein L27 OS=Thermoanaerobacter te... [more]
RL27_SULNB3.775e-2462.2050S ribosomal protein L27 OS=Sulfurovum sp. (strai... [more]
RL27_HELAH3.775e-2465.0050S ribosomal protein L27 OS=Helicobacter acinonyc... [more]
RL27_THEPX4.931e-2460.6750S ribosomal protein L27 OS=Thermoanaerobacter sp... [more]
RL27_THEP34.931e-2460.6750S ribosomal protein L27 OS=Thermoanaerobacter ps... [more]
RL27_CYTH34.931e-2463.4150S ribosomal protein L27 OS=Cytophaga hutchinsoni... [more]
RL27_CHRSD4.931e-2466.6750S ribosomal protein L27 OS=Chromohalobacter sale... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185203 ID=CN185203; Name=CN185203; organism=Citrus sinensis; type=EST; length=691bp
GAGGCCTATTTCCATTGTGTGACGATAATGGGAAAAAAAAATTCAATAAG
ATACAAGAACTAACAAGTCGAAAAATAATGGGCAGCACTTCAGACTTAGC
AATTGGGAAGGCCATCAGCAGCATAATCGAGAGCAGAAGCAAGCACCAGC
TGAGGTTGAGCCAAATAAGCTTCCTTTCTAGCCTTCTTTTTCTCCCGCTG
CAACCTGAAGTACTCTCGCTTCCTTGCTCTGTAACTGTTGGGATTCTCAG
GCTGCACTTCTCTTGGGTAAACACTTATCTGCTTCCTGTCAGGCCCAAAC
TTCTCAAATTTGACTAGTCCATCAATCAAAGAGAATATTGTATGGTCCTT
GCCAAGCCCCACATTTTTCCCTGGATGGAACTTGGTGCCACGCTGGCGGA
CGATAATTGCGCCGGGCTTGGCGACCTGGTCACCGAAAATCTTGACGCCG
AGCCGCTGTCCCCGCGAATCACGGCCGTTCTTTGTGCTACCGGCTCCCTT
CTTGTGGGCAGATTCGATAGTTAAGGGTAGCGGCGACGTTGGTGGGAGGG
AAACGGTGACGGATTTGGGACACACGGTGAAATCGCCTTTGAGGAAGGAG
GAGGAAGAGCTTGAAGATAAAGAGAGACCCTTAAACGAGCCGATTAGGCT
CGCACTCATTGAAGCTGTTGCCATTTTTCTTCTCTCGGTTT
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