CN185203

Overview
NameCN185203
Unique NameCN185203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1262 contig Csv1_Contig1262:164..854. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CLOAB (50S ribosomal protein L27 OS=Clostridium acetobutylicum GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.439e-24
Identity = 55/86 (63.95%), Postives = 63/86 (73.26%), Query Frame = -3
Query:  252 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREVQ 509
            AHKKG GS+KNGRDS  +RLGVK    +    G IIVRQRGTK HPG NVG GKD T+F+  DGLVKFEK G D+K  SVYP E++
Sbjct:   10 AHKKGMGSSKNGRDSESKRLGVKASDGEFVLAGNIIVRQRGTKIHPGVNVGRGKDDTLFAKADGLVKFEKRGKDKKFASVYPVEIE 95          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_XANP2 (50S ribosomal protein L27 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.098e-23
Identity = 52/82 (63.41%), Postives = 63/82 (76.83%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKK  GS++NGRDS G+RLGVK FG Q   PG IIVRQRGTK+HPG NVG+GKDHT+F+L++G V F+    DR  +SV P
Sbjct:    2 AHKKAGGSSRNGRDSDGRRLGVKRFGGQDVIPGNIIVRQRGTKWHPGTNVGMGKDHTLFALVEGKVTFQTKANDRTYVSVLP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_SULMW (50S ribosomal protein L27 OS=Sulcia muelleri (strain GWSS) GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.098e-23
Identity = 53/82 (64.63%), Postives = 64/82 (78.05%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GS++NGRDS  +RLGVK+FG Q+AKPG+II+RQRGTK HP KNV +GKDHTI SLI G + F+K    +  ISV P
Sbjct:    2 AHKKGVGSSRNGRDSFSKRLGVKLFGGQIAKPGSIIIRQRGTKHHPKKNVYMGKDHTIHSLIYGKILFKKTNKKKSFISVIP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_PARD8 (50S ribosomal protein L27 OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.098e-23
Identity = 50/80 (62.50%), Postives = 66/80 (82.50%), Query Frame = -3
Query:  270 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISV 509
            AHKKG GS+KNGR+S+ +RLGVK+FG +VAK G IIVRQRGT  HPG+NVG+GKDHT+++L+DG+V F +   +R  +SV
Sbjct:    2 AHKKGVGSSKNGRESQSKRLGVKLFGGEVAKAGNIIVRQRGTVHHPGENVGIGKDHTLYALVDGVVTFRRGKENRSFVSV 81          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_LACJO (50S ribosomal protein L27 OS=Lactobacillus johnsonii GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.098e-23
Identity = 53/84 (63.10%), Postives = 62/84 (73.81%), Query Frame = -3
Query:  258 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPRE 509
            AH KG GST NGR+S G+RLG K    Q    G+II RQRGTK HPGKNVG+G D T+F+L  G+VKFE+ G DRKQ+SVYP E
Sbjct:   13 AHHKGGGSTANGRNSAGRRLGAKRADGQKINAGSIIFRQRGTKIHPGKNVGIGGDDTLFALTSGVVKFERLGRDRKQVSVYPVE 96          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CLOBM (50S ribosomal protein L27 OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.098e-23
Identity = 53/86 (61.63%), Postives = 64/86 (74.42%), Query Frame = -3
Query:  252 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREVQ 509
            AHKKG GS+KNGRDS  +RLGVK    Q    G I+VRQRGTK HPG NVG G D T+F+ IDG+VK+E+ G D+K+ SVYP EV+
Sbjct:   10 AHKKGVGSSKNGRDSEAKRLGVKCSDGQFVLAGNILVRQRGTKIHPGLNVGRGGDDTLFAKIDGVVKYERLGRDKKKASVYPVEVE 95          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CLOBL (50S ribosomal protein L27 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.098e-23
Identity = 53/86 (61.63%), Postives = 64/86 (74.42%), Query Frame = -3
Query:  252 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREVQ 509
            AHKKG GS+KNGRDS  +RLGVK    Q    G I+VRQRGTK HPG NVG G D T+F+ IDG+VK+E+ G D+K+ SVYP EV+
Sbjct:   10 AHKKGVGSSKNGRDSEAKRLGVKCSDGQFVLAGNILVRQRGTKIHPGLNVGRGGDDTLFAKIDGVVKYERLGRDKKKASVYPVEVE 95          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CLOBK (50S ribosomal protein L27 OS=Clostridium botulinum (strain Okra / Type B1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.098e-23
Identity = 53/86 (61.63%), Postives = 64/86 (74.42%), Query Frame = -3
Query:  252 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREVQ 509
            AHKKG GS+KNGRDS  +RLGVK    Q    G I+VRQRGTK HPG NVG G D T+F+ IDG+VK+E+ G D+K+ SVYP EV+
Sbjct:   10 AHKKGVGSSKNGRDSEAKRLGVKCSDGQFVLAGNILVRQRGTKIHPGLNVGRGGDDTLFAKIDGVVKYERLGRDKKKASVYPVEVE 95          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CLOBJ (50S ribosomal protein L27 OS=Clostridium botulinum (strain Kyoto / Type A2) GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.098e-23
Identity = 53/86 (61.63%), Postives = 64/86 (74.42%), Query Frame = -3
Query:  252 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREVQ 509
            AHKKG GS+KNGRDS  +RLGVK    Q    G I+VRQRGTK HPG NVG G D T+F+ IDG+VK+E+ G D+K+ SVYP EV+
Sbjct:   10 AHKKGVGSSKNGRDSEAKRLGVKCSDGQFVLAGNILVRQRGTKIHPGLNVGRGGDDTLFAKIDGVVKYERLGRDKKKASVYPVEVE 95          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CLOBH (50S ribosomal protein L27 OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.098e-23
Identity = 53/86 (61.63%), Postives = 64/86 (74.42%), Query Frame = -3
Query:  252 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREVQ 509
            AHKKG GS+KNGRDS  +RLGVK    Q    G I+VRQRGTK HPG NVG G D T+F+ IDG+VK+E+ G D+K+ SVYP EV+
Sbjct:   10 AHKKGVGSSKNGRDSEAKRLGVKCSDGQFVLAGNILVRQRGTKIHPGLNVGRGGDDTLFAKIDGVVKYERLGRDKKKASVYPVEVE 95          
The following BLAST results are available for this feature:
BLAST of CN185203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_CLOAB6.439e-2463.9550S ribosomal protein L27 OS=Clostridium acetobuty... [more]
RL27_XANP21.098e-2363.4150S ribosomal protein L27 OS=Xanthobacter autotrop... [more]
RL27_SULMW1.098e-2364.6350S ribosomal protein L27 OS=Sulcia muelleri (stra... [more]
RL27_PARD81.098e-2362.5050S ribosomal protein L27 OS=Parabacteroides dista... [more]
RL27_LACJO1.098e-2363.1050S ribosomal protein L27 OS=Lactobacillus johnson... [more]
RL27_CLOBM1.098e-2361.6350S ribosomal protein L27 OS=Clostridium botulinum... [more]
RL27_CLOBL1.098e-2361.6350S ribosomal protein L27 OS=Clostridium botulinum... [more]
RL27_CLOBK1.098e-2361.6350S ribosomal protein L27 OS=Clostridium botulinum... [more]
RL27_CLOBJ1.098e-2361.6350S ribosomal protein L27 OS=Clostridium botulinum... [more]
RL27_CLOBH1.098e-2361.6350S ribosomal protein L27 OS=Clostridium botulinum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185203 ID=CN185203; Name=CN185203; organism=Citrus sinensis; type=EST; length=691bp
GAGGCCTATTTCCATTGTGTGACGATAATGGGAAAAAAAAATTCAATAAG
ATACAAGAACTAACAAGTCGAAAAATAATGGGCAGCACTTCAGACTTAGC
AATTGGGAAGGCCATCAGCAGCATAATCGAGAGCAGAAGCAAGCACCAGC
TGAGGTTGAGCCAAATAAGCTTCCTTTCTAGCCTTCTTTTTCTCCCGCTG
CAACCTGAAGTACTCTCGCTTCCTTGCTCTGTAACTGTTGGGATTCTCAG
GCTGCACTTCTCTTGGGTAAACACTTATCTGCTTCCTGTCAGGCCCAAAC
TTCTCAAATTTGACTAGTCCATCAATCAAAGAGAATATTGTATGGTCCTT
GCCAAGCCCCACATTTTTCCCTGGATGGAACTTGGTGCCACGCTGGCGGA
CGATAATTGCGCCGGGCTTGGCGACCTGGTCACCGAAAATCTTGACGCCG
AGCCGCTGTCCCCGCGAATCACGGCCGTTCTTTGTGCTACCGGCTCCCTT
CTTGTGGGCAGATTCGATAGTTAAGGGTAGCGGCGACGTTGGTGGGAGGG
AAACGGTGACGGATTTGGGACACACGGTGAAATCGCCTTTGAGGAAGGAG
GAGGAAGAGCTTGAAGATAAAGAGAGACCCTTAAACGAGCCGATTAGGCT
CGCACTCATTGAAGCTGTTGCCATTTTTCTTCTCTCGGTTT
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