CN185202

Overview
NameCN185202
Unique NameCN185202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185202 vs. ExPASy Swiss-Prot
Match: SUFB_SHIFL (FeS cluster assembly protein sufB OS=Shigella flexneri GN=sufB PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.609e-40
Identity = 76/131 (58.02%), Postives = 104/131 (79.39%), Query Frame = -2
Query:  261 GKNTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG 653
            GKNT+S IISKGIS G+S+N YRGLV++   A NARN +QCDSML+G    A+T+PY++ +N +A++EHEA+TS+IGEDQLFY  QRGI  E A++ +++GFC+DVF+ELP EF  E  +L+++ LE SVG
Sbjct:  365 GKNTKSTIISKGISAGHSQNSYRGLVKIMPTATNARNFTQCDSMLIGANCGAHTFPYVECRNNSAQLEHEATTSRIGEDQLFYCLQRGISEEDAISMIVNGFCKDVFSELPLEFAVEAQKLLAISLEHSVG 495          
BLAST of CN185202 vs. ExPASy Swiss-Prot
Match: SUFB_ECOLI (FeS cluster assembly protein sufB OS=Escherichia coli (strain K12) GN=sufB PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 7.609e-40
Identity = 76/131 (58.02%), Postives = 104/131 (79.39%), Query Frame = -2
Query:  261 GKNTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG 653
            GKNT+S IISKGIS G+S+N YRGLV++   A NARN +QCDSML+G    A+T+PY++ +N +A++EHEA+TS+IGEDQLFY  QRGI  E A++ +++GFC+DVF+ELP EF  E  +L+++ LE SVG
Sbjct:  365 GKNTKSTIISKGISAGHSQNSYRGLVKIMPTATNARNFTQCDSMLIGANCGAHTFPYVECRNNSAQLEHEATTSRIGEDQLFYCLQRGISEEDAISMIVNGFCKDVFSELPLEFAVEAQKLLAISLEHSVG 495          
BLAST of CN185202 vs. ExPASy Swiss-Prot
Match: YCF24_CYACA (UPF0051 protein ycf24 OS=Cyanidium caldarium GN=ycf24 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.028e-36
Identity = 71/131 (54.20%), Postives = 101/131 (77.10%), Query Frame = -2
Query:  261 GKNTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG 653
            G+ ++S +ISKGIS G S+N YRGLV++   A  + N SQCDS+L+G  + +NTYP + V N  ++VEHEA  S+IGE+Q+FYFQQRGI+ E+A+  ++SGFC+DV N+LP EF  E N+L+++KLEGS+G
Sbjct:  353 GRQSKSLVISKGISGGVSKNTYRGLVKISGSAIYSDNRSQCDSLLIGKGSESNTYPNLHVHNSLSKVEHEAFVSRIGEEQIFYFQQRGINIEEALNMIVSGFCQDVCNKLPMEFALEANKLLNIKLEGSIG 483          
BLAST of CN185202 vs. ExPASy Swiss-Prot
Match: Y1496_MYCBO (UPF0051 protein Mb1496 OS=Mycobacterium bovis GN=Mb1496 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.539e-27
Identity = 54/129 (41.86%), Postives = 86/129 (66.67%), Query Frame = -2
Query:  261 NTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG 647
            NT S I+SK ++ G  R  YRGLVQV   A  +R+S +CD++L+   + ++TYPY+ ++     + HEA+ SK+ E+QLFY   RG+  ++AMA ++ GF   +  ELP E+  E+N+L+ L++EG+VG
Sbjct:  718 NTSSNIVSKSVARGGGRTSYRGLVQVNKGAHGSRSSVKCDALLVDTVSRSDTYPYVDIREDDVTMGHEATVSKVSENQLFYLMSRGLTEDEAMAMVVRGFVEPIAKELPMEYALELNRLIELQMEGAVG 846          
BLAST of CN185202 vs. ExPASy Swiss-Prot
Match: Y1461_MYCTU (UPF0051 protein Rv1461/MT1508 OS=Mycobacterium tuberculosis GN=Rv1461 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.539e-27
Identity = 54/129 (41.86%), Postives = 86/129 (66.67%), Query Frame = -2
Query:  261 NTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG 647
            NT S I+SK ++ G  R  YRGLVQV   A  +R+S +CD++L+   + ++TYPY+ ++     + HEA+ SK+ E+QLFY   RG+  ++AMA ++ GF   +  ELP E+  E+N+L+ L++EG+VG
Sbjct:  718 NTSSNIVSKSVARGGGRTSYRGLVQVNKGAHGSRSSVKCDALLVDTVSRSDTYPYVDIREDDVTMGHEATVSKVSENQLFYLMSRGLTEDEAMAMVVRGFVEPIAKELPMEYALELNRLIELQMEGAVG 846          
BLAST of CN185202 vs. ExPASy Swiss-Prot
Match: Y593_MYCLE (UPF0051 protein ML0593 OS=Mycobacterium leprae GN=ML0593 PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.331e-27
Identity = 54/129 (41.86%), Postives = 86/129 (66.67%), Query Frame = -2
Query:  261 NTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG 647
            NT S I+SK ++ G  R  YRGLVQV   A  +R+S +CD++L+   + ++TYPY+ ++     + HEA+ SK+ E+QLFY   RG+  ++AMA ++ GF   +  ELP E+  E+N+L+ L++EG+VG
Sbjct:  741 NTSSNIVSKSVARGGGRTSYRGLVQVNKGAHGSRSSVKCDALLVDTISRSDTYPYVDIREDDVTMGHEATVSKVSENQLFYLMSRGLAEDEAMAMVVRGFVEPIAKELPMEYALELNRLIELQMEGAVG 869          
BLAST of CN185202 vs. ExPASy Swiss-Prot
Match: Y610_STAES (UPF0051 protein SE_0610 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_0610 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.540e-24
Identity = 53/129 (41.09%), Postives = 81/129 (62.79%), Query Frame = -2
Query:  261 NTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG 647
            NT S I+SK IS    +  YRG+V    KA+ AR++ +CD+++L + + ++T PY +V N    +EHEA  SK+ E+QLFY   RGI  E+A   ++ GF      ELP E+  E+N+L+  ++EGS+G
Sbjct:  337 NTSSTIVSKSISKNGGKVIYRGIVHFGRKAKGARSNIECDTLILDNESTSDTIPYNEVFNDNISLEHEAKVSKVSEEQLFYLMSRGISEEEATEMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG 465          
BLAST of CN185202 vs. ExPASy Swiss-Prot
Match: Y500_STAEQ (UPF0051 protein SERP0500 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP0500 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.540e-24
Identity = 53/129 (41.09%), Postives = 81/129 (62.79%), Query Frame = -2
Query:  261 NTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG 647
            NT S I+SK IS    +  YRG+V    KA+ AR++ +CD+++L + + ++T PY +V N    +EHEA  SK+ E+QLFY   RGI  E+A   ++ GF      ELP E+  E+N+L+  ++EGS+G
Sbjct:  337 NTSSTIVSKSISKNGGKVIYRGIVHFGRKAKGARSNIECDTLILDNESTSDTIPYNEVFNDNISLEHEAKVSKVSEEQLFYLMSRGISEEEATEMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG 465          
BLAST of CN185202 vs. ExPASy Swiss-Prot
Match: Y2035_STAHJ (UPF0051 protein SH2035 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH2035 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.540e-24
Identity = 53/129 (41.09%), Postives = 81/129 (62.79%), Query Frame = -2
Query:  261 NTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG 647
            NT S I+SK IS    +  YRG+V    KA+ AR++ +CD+++L + + ++T PY +V N    +EHEA  SK+ E+QLFY   RGI  E+A   ++ GF      ELP E+  E+N+L+  ++EGS+G
Sbjct:  337 NTSSTIVSKSISKNGGKVIYRGIVHFGRKAKGARSNIECDTLILDNESTSDTIPYNEVFNDNISLEHEAKVSKVSEEQLFYLMSRGISEEEATEMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG 465          
BLAST of CN185202 vs. ExPASy Swiss-Prot
Match: SUFB_BACSU (FeS cluster assembly protein sufB OS=Bacillus subtilis GN=sufB PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.540e-24
Identity = 52/129 (40.31%), Postives = 81/129 (62.79%), Query Frame = -2
Query:  261 NTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG 647
            NT S I+SK IS    +  YRG+V    KAE AR++ +CD++++ + + ++T PY ++ N    +EHEA  SK+ E+QLFY   RGI  E+A   ++ GF      ELP E+  E+N+L+  ++EGS+G
Sbjct:  337 NTSSTIVSKSISKQGGKVTYRGIVHFGRKAEGARSNIECDTLIMDNKSTSDTIPYNEILNDNISLEHEAKVSKVSEEQLFYLMSRGISEEEATEMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG 465          
The following BLAST results are available for this feature:
BLAST of CN185202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
SUFB_SHIFL7.609e-4058.02FeS cluster assembly protein sufB OS=Shigella flex... [more]
SUFB_ECOLI7.609e-4058.02FeS cluster assembly protein sufB OS=Escherichia c... [more]
YCF24_CYACA1.028e-3654.20UPF0051 protein ycf24 OS=Cyanidium caldarium GN=yc... [more]
Y1496_MYCBO2.539e-2741.86UPF0051 protein Mb1496 OS=Mycobacterium bovis GN=M... [more]
Y1461_MYCTU2.539e-2741.86UPF0051 protein Rv1461/MT1508 OS=Mycobacterium tub... [more]
Y593_MYCLE4.331e-2741.86UPF0051 protein ML0593 OS=Mycobacterium leprae GN=... [more]
Y610_STAES1.540e-2441.09UPF0051 protein SE_0610 OS=Staphylococcus epidermi... [more]
Y500_STAEQ1.540e-2441.09UPF0051 protein SERP0500 OS=Staphylococcus epiderm... [more]
Y2035_STAHJ1.540e-2441.09UPF0051 protein SH2035 OS=Staphylococcus haemolyti... [more]
SUFB_BACSU1.540e-2440.31FeS cluster assembly protein sufB OS=Bacillus subt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185202 ID=CN185202; Name=CN185202; organism=Citrus sinensis; type=EST; length=654bp
GAGGGCCAAAAGGCGATCCCATTGCCACAAAACTTCCCGAATAAATTCCA
TTAAAATTACATGTTGTTCTTGAAATAAACAAGTATGTACAAAGCTGCAA
ACATGTAGTGTGATACTACTTTTAGAACATGTTTATTTAAGTTTACAAGA
TAAACAGTACACGTCCCAACATTATGCATTTACAGCCTTTCATAATCTGG
AACTCACAGATGTATCTAAACTTTTGTAGATAAACTTGATACCAAAATTC
CTTCCCTCTAACCTACTGATCCCTCGAGTTTCAAACTCATGAGTTGGTTC
ACCTCAGCACCAAACTCATCAGGCAGCTCATTGAACACATCTCGGCAGAA
TCCAGAAATCATGGCAGCCATAGCCTTCTCATAGTCAATTCCCCTCTGCT
GAAAGTAGAAAAGCTGGTCTTCACCAATTTTTGAGGTGCTGGCTTCGTGT
TCAACACGAGCGGTAGGATTCTTCACCTGGATGTAAGGATAGGTGTTGGC
GGCAGCAGTGTCACCGAGAAGCATTGAGTCACACTGCGAGGAGTTTCGAG
CATTCTCAGCCTTTGACTGTACCTGAACAAGCCCTCTATAACAATTTCTT
GAGTTCCCAACTGAAATACCCTTAGAAATAATCCGACTCCTCGTATTCTT
CCCC
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